Rroxscaffold_4G00276560

GPCR-type G protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
125362 .. 131201
5840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00276560.1

Sequence Viewer

Length: 1386 bp
ATGGGAGGGCGTGGTAGCGGGGGATCTCTGGGACTGCTGGGTTGGGCCGGGTTGTGGTTCTTGAACCGAAGGCTGTACAAAGAGTACGAAGAGAAGAGGGTGTTAGTTCAGATCATTTTCAGCGTCGTCTTCGCCTTCTCTTGTAATCTGTTGCAGCTCGTCCTCTTCGAGATCATCCCCCTTCTCTCCCAGAGGGCACGATGGCTCAACTGGAAGCTCGATTTGTTTTGCCTCATACTCTTACTCGTTTTCATGCTGCCTTACTACCATTGTTTTCTCATGCTTTGCAACAATGGATTCCGTAAAGAGCGCGCGGCTTTTGGATCCGCCTTGTTCCTCCTCGCTTTCCTTTATGCTTTCTGGCGCATGGGAATTCACTTCCCCATGCCTTCCCCTGATAAAGGCTTCTTCACAATGCCTCAACTGGTCAGTCGGATTGGGGTCATTGGCGTTACCGTCATGGCTGTCTTGTCTGGCTTTGGAGCTGTCAATTTGCCCTACAGTTATTTATCTCTCTTTATCAGAGAGATTGAGGAAGCCGAGATCAAGTCCTTGGAAAGACAGCTAATGCAATCCATCGAGAGTTGTATTACTAAGAAAAAGAAAATCATTCTTTCTCAGATGGAGATGGAAAGGATTCAAGGATCAGAAGAGAAATTAAAGGCTAGATCTTTCTTTAAAAGAATTGTTGGCACTGTTGTGCGATCTGTGCAAGAGGATCAAAAGGAGCAAGATATCAAAAACATGGAAGCAGAAGTGCAATCATTAGAAGAGCTTTCAAAGCAGCTATTCCTGGAAATATATGAGCTTCGTCAAGCAAAGGAGGCTGCTGCTTATTCTCGTACCTGGAGAGGTCATATGCAGAATCTACTTGGCTATGCATGTTCAATCTACTGTGTATATAAAATGATTAAGTCTTTACAGAGTGTTGTTTTCAAGGAGGCTGGCTCTGTGGATCCTGTGACGATGACAATTAGCATATTTCTGCAGTTTTTTGACATTGGCATCAATGCAGCATTGTTATCACAGTATATTTCACTCTTGTTCATTGGAATGTTGATTGTTATATCAGTACGGGGATTCTTGACAAATTTGATGAAGTTCTTTTTTGCAGTTTCCAGAGTTGGAAGTGGATCTTCTAGCAATGTCGTATTGTTTCTGTCGGAAATTATGGGAATGTACTTTGTGTCATCTATTCTTTTGATCAGAAAAAGCCTGGCAACTGAGTACAGGATGATCATAACAGATGTTTTGGGTGGAGATATTCAATTTGACTTCTATCACCGGTGGTTTGATGCTATCTTTGTGGCCAGTGCTTTCCTTTCTCTGCTCTTGCTTTCTGCACATTATACTTCTCGGCAGGCTGACAAACACCCGATCGACTAA

Protein Analysis

461

Amino Acids

52.79

Weight (kDa)

9.07

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GPHR_N PF12537 136 - 203 1.5e-23 The Golgi pH Regulator (GPHR) Family N-terminal
ABA_GPCR PF12430 279 - 449 1e-43 Abscisic acid G-protein coupled receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 312, 314
AciI CCGC 3 cut(s) 18, 314, 327
AclWI GGATC 8 cut(s) 31, 318, 331, 652, 726, 950, 963, 1141
AcoI YGGCCR 1 cut(s) 1308
AcsI RAATTY 2 cut(s) 372, 1090
AfaI GTAC 6 cut(s) 77, 86, 844, 1074, 1181, 1229
AfiI CCNNNNNNNGG 2 cut(s) 54, 401
AgeI ACCGGT 1 cut(s) 1284
AgsI TTSAA 6 cut(s) 64, 641, 780, 888, 937, 1268
AjnI CCWGG 3 cut(s) 792, 845, 1215
AleI CACNNNNGTG 1 cut(s) 698
AluBI AGCT 7 cut(s) 157, 217, 485, 565, 775, 787, 808
AluI AGCT 7 cut(s) 157, 217, 485, 565, 775, 787, 808
AlwI GGATC 8 cut(s) 31, 318, 331, 652, 726, 950, 963, 1141
AoxI GGCC 2 cut(s) 45, 1308
ApeKI GCWGC 6 cut(s) 154, 256, 784, 827, 830, 1013
ApoI RAATTY 2 cut(s) 372, 1090
AsiGI ACCGGT 1 cut(s) 1284
Asp700I GAANNNNTTC 1 cut(s) 636
AspLEI GCGC 3 cut(s) 312, 314, 366
AspS9I GGNCC 1 cut(s) 45
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 1274
BaeGI GKGCMC 1 cut(s) 199
BalI TGGCCA 1 cut(s) 1310
BamHI GGATCC 2 cut(s) 323, 955
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 6 cut(s) 166, 243, 796, 814, 817, 1025
BccI CCATC 4 cut(s) 195, 584, 616, 622
BciT130I CCWGG 3 cut(s) 794, 847, 1217
BclI TGATCA 2 cut(s) 1203, 1236
BcnI CCSGG 1 cut(s) 49
BfaI CTAG 2 cut(s) 666, 1140
BfmI CTRYAG 2 cut(s) 499, 986
BglII AGATCT 1 cut(s) 668
BisI GCNGC 7 cut(s) 155, 257, 315, 785, 828, 831, 1014
BlsI GCNGC 7 cut(s) 156, 258, 316, 786, 829, 832, 1015
Bme1390I CCNGG 4 cut(s) 49, 794, 847, 1217
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 2 cut(s) 325, 957
BmrFI CCNGG 4 cut(s) 49, 794, 847, 1217
BmsI GCATC 2 cut(s) 1014, 1285
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 932, 964
BpmI CTGGAG 1 cut(s) 868
BpuMI CCSGG 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 552
BsaWI WCCGGW 1 cut(s) 1284
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 401
Bse118I RCCGGY 1 cut(s) 1284
Bse1I ACTGG 3 cut(s) 215, 429, 1311
Bse3DI GCAATG 1 cut(s) 1150
BseBI CCWGG 3 cut(s) 794, 847, 1217
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 2 cut(s) 174, 1239
BseLI CCNNNNNNNGG 2 cut(s) 54, 401
BseMI GCAATG 1 cut(s) 1150
BseMII CTCAG 2 cut(s) 632, 1215
BseNI ACTGG 3 cut(s) 215, 429, 1311
BsePI GCGCGC 1 cut(s) 310
BseRI GAGGAG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 6 cut(s) 166, 243, 796, 814, 817, 1025
BseYI CCCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 1326
Bsh1236I CGCG 2 cut(s) 312, 314
Bsh1285I CGRYCG 1 cut(s) 1380
BshFI GGCC 2 cut(s) 47, 1310
BshTI ACCGGT 1 cut(s) 1284
BsiEI CGRYCG 1 cut(s) 1380
BsiSI CCGG 2 cut(s) 48, 1285
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 54, 401
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 2 cut(s) 47, 1310
Bsp1286I GDGCHC 1 cut(s) 199
Bsp1407I TGTACA 1 cut(s) 75
BspACI CCGC 3 cut(s) 18, 314, 327
BspANI GGCC 2 cut(s) 47, 1310
BspCNI CTCAG 2 cut(s) 631, 1216
BspFNI CGCG 2 cut(s) 312, 314
BspLI GGNNCC 2 cut(s) 325, 957
BspMAI CTGCAG 1 cut(s) 990
BspPI GGATC 8 cut(s) 31, 318, 331, 652, 726, 950, 963, 1141
BspQI GCTCTTC 1 cut(s) 765
BsrDI GCAATG 1 cut(s) 1150
BsrFI RCCGGY 1 cut(s) 1284
BsrGI TGTACA 1 cut(s) 75
BsrI ACTGG 3 cut(s) 215, 429, 1311
BssAI RCCGGY 1 cut(s) 1284
BssECI CCNNGG 1 cut(s) 552
BssHII GCGCGC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 3 cut(s) 794, 847, 1217
Bst4CI ACNGT 5 cut(s) 457, 503, 697, 896, 1029
Bst6I CTCTTC 5 cut(s) 84, 89, 170, 645, 765
BstAUI TGTACA 1 cut(s) 75
BstC8I GCNNGC 3 cut(s) 312, 946, 1362
BstDEI CTNAG 3 cut(s) 594, 618, 1224
BstENI CCTNNNNNAGG 1 cut(s) 399
BstF5I GGATG 2 cut(s) 174, 1239
BstFNI CGCG 2 cut(s) 312, 314
BstHHI GCGC 3 cut(s) 312, 314, 366
BstMCI CGRYCG 1 cut(s) 1380
BstMWI GCNNNNNNNGC 3 cut(s) 709, 781, 824
BstNI CCWGG 3 cut(s) 794, 847, 1217
BstNSI RCATGY 1 cut(s) 885
BstSCI CCNGG 4 cut(s) 47, 792, 845, 1215
BstSFI CTRYAG 2 cut(s) 499, 986
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 2 cut(s) 312, 314
BstV1I GCAGC 6 cut(s) 166, 243, 796, 814, 817, 1025
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 5 cut(s) 23, 323, 668, 955, 1133
BstYI RGATCY 5 cut(s) 23, 323, 668, 955, 1133
BsuRI GGCC 2 cut(s) 47, 1310
BtsCI GGATG 2 cut(s) 174, 1239
BtsIMutI CAGTG 2 cut(s) 693, 1318
Cac8I GCNNGC 3 cut(s) 312, 946, 1362
CfoI GCGC 3 cut(s) 312, 314, 366
Cfr10I RCCGGY 1 cut(s) 1284
Cfr13I GGNCC 1 cut(s) 45
CseI GACGC 1 cut(s) 112
Csp6I GTAC 6 cut(s) 76, 85, 843, 1073, 1180, 1228
CspAI ACCGGT 1 cut(s) 1284
CviAII CATG 7 cut(s) 253, 280, 367, 385, 460, 745, 882
CviQI GTAC 6 cut(s) 76, 85, 843, 1073, 1180, 1228
DdeI CTNAG 3 cut(s) 594, 618, 1224
DraI TTTAAA 1 cut(s) 679
EaeI YGGCCR 1 cut(s) 1308
Eam1104I CTCTTC 5 cut(s) 84, 89, 170, 645, 765
EarI CTCTTC 5 cut(s) 84, 89, 170, 645, 765
EciI GGCGGA 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 552
Eco32I GATATC 1 cut(s) 736
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 372
EcoRII CCWGG 3 cut(s) 792, 845, 1215
EcoRV GATATC 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 552
EcoT22I ATGCAT 1 cut(s) 883
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 7 cut(s) 256, 283, 370, 388, 463, 748, 885
FalI AAGNNNNNCTT 2 cut(s) 1120, 1152
FaqI GGGAC 1 cut(s) 45
FatI CATG 7 cut(s) 252, 279, 366, 384, 459, 744, 881
FauI CCCGC 1 cut(s) 11
FauNDI CATATG 1 cut(s) 858
FbaI TGATCA 2 cut(s) 1203, 1236
Fnu4HI GCNGC 7 cut(s) 155, 257, 315, 785, 828, 831, 1014
FokI GGATG 2 cut(s) 161, 1246
Fsp4HI GCNGC 7 cut(s) 155, 257, 315, 785, 828, 831, 1014
FspBI CTAG 2 cut(s) 666, 1140
GlaI GCGC 3 cut(s) 311, 313, 365
GluI GCNGC 7 cut(s) 155, 257, 315, 785, 828, 831, 1014
GsaI CCCAGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 868
HaeIII GGCC 2 cut(s) 47, 1310
HapII CCGG 2 cut(s) 48, 1285
HgaI GACGC 1 cut(s) 112
HhaI GCGC 3 cut(s) 312, 314, 366
Hin1II CATG 7 cut(s) 256, 283, 370, 388, 463, 748, 885
Hin6I GCGC 3 cut(s) 310, 312, 364
HinP1I GCGC 3 cut(s) 310, 312, 364
HinfI GANTC 4 cut(s) 297, 637, 865, 1080
HpaII CCGG 2 cut(s) 48, 1285
HphI GGTGA 1 cut(s) 1274
Hpy188I TCNGA 7 cut(s) 111, 435, 524, 621, 649, 1165, 1208
Hpy188III TCNNGA 5 cut(s) 61, 169, 580, 1084, 1119
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 4 cut(s) 63, 145, 191, 399
HpyCH4III ACNGT 5 cut(s) 457, 503, 697, 896, 1029
HpyF10VI GCNNNNNNNGC 3 cut(s) 709, 781, 824
HpyF3I CTNAG 3 cut(s) 594, 618, 1224
Hsp92II CATG 7 cut(s) 256, 283, 370, 388, 463, 748, 885
HspAI GCGC 3 cut(s) 310, 312, 364
Ksp22I TGATCA 2 cut(s) 1203, 1236
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 2 cut(s) 482, 727
Lsp1109I GCAGC 6 cut(s) 166, 243, 796, 814, 817, 1025
LweI GCATC 2 cut(s) 1014, 1285
MaeI CTAG 2 cut(s) 666, 1140
MaeIII GTNAC 2 cut(s) 451, 961
MboII GAAGA 8 cut(s) 101, 106, 121, 157, 400, 662, 782, 1128
MflI RGATCY 5 cut(s) 23, 323, 668, 955, 1133
MhlI GDGCHC 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 1310
MluCI AATT 8 cut(s) 372, 490, 656, 684, 972, 1090, 1167, 1268
MluNI TGGCCA 1 cut(s) 1310
MmeI TCCRAC 3 cut(s) 413, 1105, 1143
Mox20I TGGCCA 1 cut(s) 1310
Mph1103I ATGCAT 1 cut(s) 883
MroXI GAANNNNTTC 1 cut(s) 636
MscI TGGCCA 1 cut(s) 1310
MseI TTAA 3 cut(s) 659, 678, 912
MslI CAYNNNNRTG 2 cut(s) 698, 1052
Msp20I TGGCCA 1 cut(s) 1310
MspI CCGG 2 cut(s) 48, 1285
MspR9I CCNGG 4 cut(s) 49, 794, 847, 1217
MvaI CCWGG 3 cut(s) 794, 847, 1217
MvnI CGCG 2 cut(s) 312, 314
MwoI GCNNNNNNNGC 3 cut(s) 709, 781, 824
NciI CCSGG 1 cut(s) 49
NdeI CATATG 1 cut(s) 858
NlaIII CATG 7 cut(s) 256, 283, 370, 388, 463, 748, 885
NlaIV GGNNCC 2 cut(s) 325, 957
NmeAIII GCCGAG 2 cut(s) 565, 1336
NmuCI GTSAC 1 cut(s) 961
NsiI ATGCAT 1 cut(s) 883
NspI RCATGY 1 cut(s) 885
OliI CACNNNNGTG 1 cut(s) 698
PauI GCGCGC 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 765
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 4 cut(s) 297, 637, 865, 1080
PfoI TCCNGGA 1 cut(s) 792
PinAI ACCGGT 1 cut(s) 1284
PkrI GCNGC 7 cut(s) 156, 258, 316, 786, 829, 832, 1015
Ple19I CGATCG 1 cut(s) 1380
Psp6I CCWGG 3 cut(s) 792, 845, 1215
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 3 cut(s) 792, 845, 1215
PspN4I GGNNCC 2 cut(s) 325, 957
PspPI GGNCC 1 cut(s) 45
PstI CTGCAG 1 cut(s) 990
PsuI RGATCY 5 cut(s) 23, 323, 668, 955, 1133
PteI GCGCGC 1 cut(s) 310
PvuI CGATCG 1 cut(s) 1380
RsaI GTAC 6 cut(s) 77, 86, 844, 1074, 1181, 1229
RsaNI GTAC 6 cut(s) 76, 85, 843, 1073, 1180, 1228
RseI CAYNNNNRTG 2 cut(s) 698, 1052
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 3 cut(s) 659, 678, 912
SatI GCNGC 7 cut(s) 155, 257, 315, 785, 828, 831, 1014
Sau96I GGNCC 1 cut(s) 45
ScrFI CCNGG 4 cut(s) 49, 794, 847, 1217
SduI GDGCHC 1 cut(s) 199
SetI ASST 9 cut(s) 159, 219, 487, 567, 777, 789, 810, 848, 856
SfaNI GCATC 2 cut(s) 1014, 1285
SfcI CTRYAG 2 cut(s) 499, 986
SgrAI CRCCGGYG 1 cut(s) 1284
SmiMI CAYNNNNRTG 2 cut(s) 698, 1052
Sse9I AATT 8 cut(s) 372, 490, 656, 684, 972, 1090, 1167, 1268
SsiI CCGC 3 cut(s) 18, 314, 327
SspMI CTAG 2 cut(s) 666, 1140
StyD4I CCNGG 4 cut(s) 47, 792, 845, 1215
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 5 cut(s) 457, 503, 697, 896, 1029
TaqI TCGA 4 cut(s) 168, 219, 579, 1380
TasI AATT 8 cut(s) 372, 490, 656, 684, 972, 1090, 1167, 1268
TatI WGTACW 3 cut(s) 75, 1179, 1227
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 4 cut(s) 297, 637, 865, 1080
Tru1I TTAA 3 cut(s) 659, 678, 912
Tru9I TTAA 3 cut(s) 659, 678, 912
TscAI CASTG 2 cut(s) 700, 1318
TseFI GTSAC 1 cut(s) 961
TseI GCWGC 6 cut(s) 154, 256, 784, 827, 830, 1013
Tsp45I GTSAC 1 cut(s) 961
TspDTI ATGAA 3 cut(s) 241, 1036, 1112
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 700, 1318
XagI CCTNNNNNAGG 1 cut(s) 399
XapI RAATTY 2 cut(s) 372, 1090
XceI RCATGY 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 2 cut(s) 666, 1140
Zsp2I ATGCAT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.