Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002109

Physical Location & Seq

Genomic Coordinates Forward (+)

54548696 .. 54550017

Gene Structure 1322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0449700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCATGGGGGTCACTTTTCTCCTTTTCAATACCTAAGCAATGGAAACTTTGTTGCCTACCTTCTACTCTGCTAAAAACAGTCATTGTTAGAGTCTATGAAACAAGGTTGGATCTTTTGAGAGCTGTAATTGTTGGAGCTAAGGGTACTCCTTTCCATGATGGTCTCTTTTTCTTTGATGTTTCCTTCCCCAGTGGGTACCCCAATGTGCCACCGGTAGGAGCTTTAGCACCTGCAAGACCATTTGCTTTCATTAAATTCAGTAGGGAAGGTTTTGGCTTATGTCTAAGTGATAAAATAGCTCCCAAATTTCAATTTTGCAGAGGTCAGTCAAATGTCCAGTCCTTTAACATCAGATTAAAGCCCAATCCTGATAGAAGTGCAAAAGGCACAGTCATTGAGGCCGCTCTTGATAAATCTAGAGGACCTTTAGTTACACTTATCATGCAAAATGGAACCATTAGAAAGGGGAACATAGTAGTTTGTGGAGAAGCCTTTGGAAAGGTCTTAACAGCTTCTAGCTTAAGAGCTCTTGGGTATGCTGGTGAAGTAGAAGGGATTGGTCATGTTGTGGCCTTAGACAATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010228 GO:0010427 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0019840 GO:0019899 GO:0022414 GO:0031406 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033293 GO:0033554 GO:0033993 GO:0035639 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051020 GO:0051716 GO:0061458 GO:0070417 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098827 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

196

Amino Acids

21.25

Weight (kDa)

9.57

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	33 - 73	3.2e-07	Ubiquitin-conjugating enzyme
EF-G_D2	PF22042	128 - 171	2.3e-09	Elongation factor G domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64990 AT1G64990 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630
fragaria_vesca	FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230
malus_domestica	MD01G1239200.v1.1 MD07G1310900.v1.1
prunus_persica	Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1
pyrus_communis	pycom01g24650 pycom07g28320
rosa_chinensis	RchiOBHm_Chr1g0384591
rosa_laevigata	RLG00000026029
rosa_multiflora	Rmu_co8335957.1_g000001 Rmu_sc0006005.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276560
rosa_rugosa	Rorug01G0449600 Rorug01G0449700 Rorug01G0449800 Rorug01G0449900 Rorug01G0450000
rosa_samantha	Rh1AG474400 Rh1BG432400 Rh1CG445600 Rh1DG465100
rosa_wichuraiana	Rw1G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	241
Acc65I	GGTACC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	198
AccBSI	CCGCTC	1 cut(s)	407
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	257, 308
AfaI	GTAC	2 cut(s)	148, 200
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflII	CTTAAG	1 cut(s)	523
AgeI	ACCGGT	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	30, 314
AluBI	AGCT	7 cut(s)	125, 140, 224, 302, 515, 522, 530
AluI	AGCT	7 cut(s)	125, 140, 224, 302, 515, 522, 530
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	120
AoxI	GGCC	2 cut(s)	402, 573
ApoI	RAATTY	2 cut(s)	257, 308
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AsiGI	ACCGGT	1 cut(s)	214
Asp718I	GGTACC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	532
Bbv12I	GWGCWC	1 cut(s)	532
BccI	CCATC	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	420, 519
BfrI	CTTAAG	1 cut(s)	523
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	2 cut(s)	200, 457
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
Bpu10I	CCTNAGC	2 cut(s)	36, 141
BsaI	GGTCTC	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	192, 340
Bse3DI	GCAATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	1 cut(s)	47
BseNI	ACTGG	2 cut(s)	192, 340
BshFI	GGCC	2 cut(s)	404, 575
BshNI	GGYRCC	1 cut(s)	198
BshTI	ACCGGT	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	404, 575
Bso31I	GGTCTC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	2 cut(s)	404, 575
BspLI	GGNNCC	2 cut(s)	200, 457
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	192, 340
BssAI	RCCGGY	1 cut(s)	214
BssMI	GATC	1 cut(s)	112
Bst4CI	ACNGT	2 cut(s)	82, 394
BstAFI	CTTAAG	1 cut(s)	523
BstDEI	CTNAG	4 cut(s)	36, 141, 287, 577
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	404, 575
BtsIMutI	CAGTG	1 cut(s)	199
BveI	ACCTGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	147, 199
CspAI	ACCGGT	1 cut(s)	214
CviAII	CATG	4 cut(s)	6, 158, 445, 566
CviQI	GTAC	2 cut(s)	147, 199
DdeI	CTNAG	4 cut(s)	36, 141, 287, 577
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	530
Eco24I	GRGCYC	1 cut(s)	532
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	530
EcoICRI	GAGCTC	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	532
FaeI	CATG	4 cut(s)	9, 161, 448, 569
FaiI	YATR	8 cut(s)	7, 99, 159, 283, 446, 476, 540, 567
FatI	CATG	4 cut(s)	5, 157, 444, 565
Fnu4HI	GCNGC	1 cut(s)	405
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	2 cut(s)	420, 519
GluI	GCNGC	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	404, 575
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	4 cut(s)	9, 161, 448, 569
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	557
Hpy188I	TCNGA	1 cut(s)	356
Hpy188III	TCNNGA	3 cut(s)	371, 410, 420
HpyAV	CCTTC	4 cut(s)	72, 196, 263, 548
HpyCH4III	ACNGT	2 cut(s)	82, 394
HpyCH4V	TGCA	4 cut(s)	236, 321, 383, 448
HpyF3I	CTNAG	4 cut(s)	36, 141, 287, 577
Hsp92II	CATG	4 cut(s)	9, 161, 448, 569
KpnI	GGTACC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	3 cut(s)	137, 221, 307
LpnPI	CCDG	6 cut(s)	205, 228, 246, 353, 384, 528
MaeI	CTAG	2 cut(s)	420, 519
MaeIII	GTNAC	2 cut(s)	12, 433
MalI	GATC	1 cut(s)	114
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	1 cut(s)	112
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	4 cut(s)	129, 257, 308, 314
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	2 cut(s)	90, 115
MnlI	CCTC	3 cut(s)	317, 394, 416
MseI	TTAA	6 cut(s)	255, 348, 359, 509, 524, 589
MspCI	CTTAAG	1 cut(s)	523
MspI	CCGG	1 cut(s)	215
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	4 cut(s)	9, 161, 448, 569
NlaIV	GGNNCC	2 cut(s)	200, 457
NmuCI	GTSAC	1 cut(s)	12
PaqCI	CACCTGC	1 cut(s)	241
PinAI	ACCGGT	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PpuMI	RGGWCCY	1 cut(s)	425
Psp124BI	GAGCTC	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	425
PspN4I	GGNNCC	2 cut(s)	200, 457
PspPI	GGNCC	1 cut(s)	425
PspPPI	RGGWCCY	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	2 cut(s)	148, 200
RsaNI	GTAC	2 cut(s)	147, 199
SacI	GAGCTC	1 cut(s)	532
SaqAI	TTAA	6 cut(s)	255, 348, 359, 509, 524, 589
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	532
SinI	GGWCC	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	4 cut(s)	129, 257, 308, 314
SsiI	CCGC	1 cut(s)	405
SspMI	CTAG	2 cut(s)	420, 519
SstI	GAGCTC	1 cut(s)	532
TaaI	ACNGT	2 cut(s)	82, 394
TasI	AATT	4 cut(s)	129, 257, 308, 314
TauI	GCSGC	1 cut(s)	407
Tru1I	TTAA	6 cut(s)	255, 348, 359, 509, 524, 589
Tru9I	TTAA	6 cut(s)	255, 348, 359, 509, 524, 589
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	114, 241
TspRI	CASTG	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	2 cut(s)	257, 308
XbaI	TCTAGA	1 cut(s)	419
XspI	CTAG	2 cut(s)	420, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.