Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8335957.1

Orthogroup ID

OG0002109

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 878

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8335957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgggttggggttgggcaatatgggagggagtggtagcggggggatctctgggactgctgggttgggccgggttgtggttcttgaaccgaaggctgtacaaagagtacgaagagaagagggtgttagttcagatcattttcagcgtcgtcttcgccttctcttgtaatctgttgcagctcgtcctcttcgagatcatcccccttctctcccagagggcacgatggctcaactggaagctcgatttgttttgcctcatactcttactcgttttcatgctgccttactaccattgttttctcatgctttgcaacaatggattccgtaaagagcgcgcggcttttggatccgccttgttcctcctcgctttcctttatgctttctggcgcatgggaattcacttccccatgccttcccctgataaaggcttcttcacaatgccccaactggtcagtcggattggggtcattggcgttaccgtcatggctgtcttgtctggctttggagctgtcaatttgccctacagttatttatctctctttatcagagagattgaggaagccgagatcaagtccttggaaagacagctgatgcaatccatcgagagttgtattactaagaaaaagaaaatcattctttctcagatggagatggaaaggattcaaggatcagaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010228 GO:0010427 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0019840 GO:0019899 GO:0022414 GO:0031406 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033293 GO:0033554 GO:0033993 GO:0035639 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051020 GO:0051716 GO:0061458 GO:0070417 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098827 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

225

Amino Acids

26.02

Weight (kDa)

8.81

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64990 AT1G64990 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630
fragaria_vesca	FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230
malus_domestica	MD01G1239200.v1.1 MD07G1310900.v1.1
prunus_persica	Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1
pyrus_communis	pycom01g24650 pycom07g28320
rosa_chinensis	RchiOBHm_Chr1g0384591
rosa_laevigata	RLG00000026029
rosa_multiflora	Rmu_co8335957.1_g000001 Rmu_sc0006005.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276560
rosa_rugosa	Rorug01G0449600 Rorug01G0449700 Rorug01G0449800 Rorug01G0449900 Rorug01G0450000
rosa_samantha	Rh1AG474400 Rh1BG432400 Rh1CG445600 Rh1DG465100
rosa_wichuraiana	Rw1G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	333, 335
AciI	CCGC	3 cut(s)	38, 335, 348
AclWI	GGATC	4 cut(s)	52, 339, 352, 673
AcsI	RAATTY	1 cut(s)	393
AfaI	GTAC	2 cut(s)	98, 107
AfiI	CCNNNNNNNGG	2 cut(s)	75, 422
AgsI	TTSAA	2 cut(s)	85, 662
AluBI	AGCT	4 cut(s)	178, 238, 506, 586
AluI	AGCT	4 cut(s)	178, 238, 506, 586
AlwI	GGATC	4 cut(s)	52, 339, 352, 673
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	175, 277
ApoI	RAATTY	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	3 cut(s)	333, 335, 387
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	187, 264
BccI	CCATC	4 cut(s)	216, 605, 637, 643
BcnI	CCSGG	1 cut(s)	70
BfmI	CTRYAG	1 cut(s)	520
BisI	GCNGC	3 cut(s)	176, 278, 336
BlsI	GCNGC	3 cut(s)	177, 279, 337
Bme1390I	CCNGG	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	579
BpiI	GAAGAC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 422
Bse1I	ACTGG	2 cut(s)	236, 450
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	75, 422
BseMII	CTCAG	1 cut(s)	653
BseNI	ACTGG	2 cut(s)	236, 450
BsePI	GCGCGC	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	187, 264
BseYI	CCCAGC	1 cut(s)	58
Bsh1236I	CGCG	2 cut(s)	333, 335
BshFI	GGCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	75, 422
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	6 cut(s)	44, 132, 192, 344, 564, 665
BspACI	CCGC	3 cut(s)	38, 335, 348
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	652
BspFNI	CGCG	2 cut(s)	333, 335
BspLI	GGNNCC	1 cut(s)	346
BspPI	GGATC	4 cut(s)	52, 339, 352, 673
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	236, 450
BssECI	CCNNGG	1 cut(s)	573
BssHII	GCGCGC	1 cut(s)	331
BssMI	GATC	6 cut(s)	44, 132, 192, 344, 564, 665
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	478, 524
Bst6I	CTCTTC	4 cut(s)	105, 110, 191, 666
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	615, 639
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	195
BstFNI	CGCG	2 cut(s)	333, 335
BstHHI	GCGC	3 cut(s)	333, 335, 387
BstKTI	GATC	6 cut(s)	47, 135, 195, 347, 567, 668
BstMBI	GATC	6 cut(s)	44, 132, 192, 344, 564, 665
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	520
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	2 cut(s)	333, 335
BstV1I	GCAGC	2 cut(s)	187, 264
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	2 cut(s)	44, 344
BstYI	RGATCY	2 cut(s)	44, 344
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	3 cut(s)	333, 335, 387
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	97, 106
CviAII	CATG	5 cut(s)	274, 301, 388, 406, 481
CviQI	GTAC	2 cut(s)	97, 106
DdeI	CTNAG	2 cut(s)	615, 639
DpnI	GATC	6 cut(s)	46, 134, 194, 346, 566, 667
DpnII	GATC	6 cut(s)	44, 132, 192, 344, 564, 665
Eam1104I	CTCTTC	4 cut(s)	105, 110, 191, 666
EarI	CTCTTC	4 cut(s)	105, 110, 191, 666
EciI	GGCGGA	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	573
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	5 cut(s)	277, 304, 391, 409, 484
FaiI	YATR	8 cut(s)	22, 257, 275, 302, 375, 389, 407, 482
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	5 cut(s)	273, 300, 387, 405, 480
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	176, 278, 336
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	176, 278, 336
GlaI	GCGC	3 cut(s)	332, 334, 386
GluI	GCNGC	3 cut(s)	176, 278, 336
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	3 cut(s)	333, 335, 387
Hin1II	CATG	5 cut(s)	277, 304, 391, 409, 484
Hin6I	GCGC	3 cut(s)	331, 333, 385
HinP1I	GCGC	3 cut(s)	331, 333, 385
HinfI	GANTC	2 cut(s)	318, 658
HpaII	CCGG	1 cut(s)	69
Hpy188I	TCNGA	5 cut(s)	132, 456, 545, 642, 670
Hpy188III	TCNNGA	3 cut(s)	82, 190, 601
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	4 cut(s)	84, 166, 212, 420
HpyCH4III	ACNGT	2 cut(s)	478, 524
HpyCH4V	TGCA	3 cut(s)	175, 309, 592
HpyF3I	CTNAG	2 cut(s)	615, 639
Hsp92II	CATG	5 cut(s)	277, 304, 391, 409, 484
HspAI	GCGC	3 cut(s)	331, 333, 385
Kzo9I	GATC	6 cut(s)	44, 132, 192, 344, 564, 665
LmnI	GCTCC	1 cut(s)	503
LpnPI	CCDG	9 cut(s)	35, 44, 82, 217, 224, 367, 429, 431, 480
Lsp1109I	GCAGC	2 cut(s)	187, 264
LweI	GCATC	1 cut(s)	579
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	6 cut(s)	46, 134, 194, 346, 566, 667
MboI	GATC	6 cut(s)	44, 132, 192, 344, 564, 665
MboII	GAAGA	5 cut(s)	122, 127, 142, 178, 421
MflI	RGATCY	2 cut(s)	44, 344
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	2 cut(s)	393, 511
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	8 cut(s)	19, 111, 194, 207, 263, 368, 371, 547
MroXI	GAANNNNTTC	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	586
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	70
MvnI	CGCG	2 cut(s)	333, 335
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	6 cut(s)	44, 132, 192, 344, 564, 665
NlaIII	CATG	5 cut(s)	277, 304, 391, 409, 484
NlaIV	GGNNCC	1 cut(s)	346
NmeAIII	GCCGAG	1 cut(s)	586
PauI	GCGCGC	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	318, 658
PkrI	GCNGC	3 cut(s)	177, 279, 337
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	66
PsuI	RGATCY	2 cut(s)	44, 344
PteI	GCGCGC	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	586
RsaI	GTAC	2 cut(s)	98, 107
RsaNI	GTAC	2 cut(s)	97, 106
SatI	GCNGC	3 cut(s)	176, 278, 336
Sau3AI	GATC	6 cut(s)	44, 132, 192, 344, 564, 665
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	4 cut(s)	180, 240, 508, 588
SfaNI	GCATC	1 cut(s)	579
SfcI	CTRYAG	1 cut(s)	520
Sse9I	AATT	2 cut(s)	393, 511
SsiI	CCGC	3 cut(s)	38, 335, 348
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	478, 524
TaqI	TCGA	3 cut(s)	189, 240, 600
TasI	AATT	2 cut(s)	393, 511
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	2 cut(s)	318, 658
TseI	GCWGC	2 cut(s)	175, 277
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	311
XagI	CCTNNNNNAGG	1 cut(s)	420
XapI	RAATTY	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.