Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002109

Physical Location & Seq

Genomic Coordinates Forward (+)

54564601 .. 54565752

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0449900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTTCAATTTCAGTAGCAGCATTGCTATCTTTAGTGATAGCAATGCTACTTCTGGCGATTGGGTCTAATGCAGGCGGAATCGCGATTTACTGGGGCCAAAATGGAAATGAAGGCACATTAGCACAAACATGTACCTCAGGGAACTACAAGTTTGTAAACATAGCTTTCCTCTCATCATTTGGCAATGGCCGAACCCCTACCATAAACCTTGCGGGTCACTGTGACCCGTCCAGCAATGGATGCACCAAGTTCAGCTCTCAAATCAAGTCGTGCCAAGCCAGAGGCATCAAGGTCATACTCTCTATTGGGGGAGGCTGGGGAGGTACCGGAGGCTACTCTCTAGCTTCATCTGAAGATGCCCGCCAAGTTGGTGCTTACTTGTGGAACAACTTCTTGGGAGGTCACTCCTCTTCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTCGACATTGAAGGAGGGGATGACCAGTACTGGGATGACCTTGCTAGGTACCTTTCGGCGCATAGCAAGAAGGGTGGCAAGAAAGTTTACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTTAAGACAGGCCTATTTGACTATGTTTGGGTTCAATTCTACAACAACCCTCCTTGTCAGTACACTTCTGGTGATGTCACCAATCTCGAAGACGCTTGGAAGCAATGGACTTCAGCCATTCCTGCACAGAAGATCTTCTTAGGACTCCCTGCTGCACCTCAAGCTGCTGGGAGCGGATTTATTCCTGCTGCTGCTCTCACTTCACAAGTTCTTCCGGGTATAAAAAATTCAGCTAAATATGGTGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTTGATGGATACAGCTCCTCCATCAAGAATCATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010228 GO:0010427 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0019840 GO:0019899 GO:0022414 GO:0031406 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033293 GO:0033554 GO:0033993 GO:0035639 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051020 GO:0051716 GO:0061458 GO:0070417 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098827 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

302

Amino Acids

31.9

Weight (kDa)

6.4

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	28 - 250	1.3e-23	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64990 AT1G64990 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630
fragaria_vesca	FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230
malus_domestica	MD01G1239200.v1.1 MD07G1310900.v1.1
prunus_persica	Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1
pyrus_communis	pycom01g24650 pycom07g28320
rosa_chinensis	RchiOBHm_Chr1g0384591
rosa_laevigata	RLG00000026029
rosa_multiflora	Rmu_co8335957.1_g000001 Rmu_sc0006005.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276560
rosa_rugosa	Rorug01G0449600 Rorug01G0449700 Rorug01G0449800 Rorug01G0449900 Rorug01G0450000
rosa_samantha	Rh1AG474400 Rh1BG432400 Rh1CG445600 Rh1DG465100
rosa_wichuraiana	Rw1G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	326, 501
AccB1I	GGYRCC	2 cut(s)	326, 501
AccBSI	CCGCTC	1 cut(s)	768
AccII	CGCG	1 cut(s)	86
AciI	CCGC	4 cut(s)	78, 215, 364, 768
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	820
AcuI	CTGAAG	2 cut(s)	375, 690
AfaI	GTAC	5 cut(s)	136, 328, 482, 503, 656
AfiI	CCNNNNNNNGG	2 cut(s)	417, 484
AflII	CTTAAG	1 cut(s)	596
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	9, 417, 464, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	6 cut(s)	167, 258, 347, 758, 827, 885
AluI	AGCT	6 cut(s)	167, 258, 347, 758, 827, 885
AoxI	GGCC	4 cut(s)	97, 190, 419, 604
ApeKI	GCWGC	6 cut(s)	20, 551, 746, 758, 782, 785
ApoI	RAATTY	1 cut(s)	820
Asp700I	GAANNNNTTC	2 cut(s)	392, 728
Asp718I	GGTACC	2 cut(s)	326, 501
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	2 cut(s)	97, 852
AsuC2I	CCSGG	1 cut(s)	810
AsuHPI	GGTGA	2 cut(s)	664, 677
AvaII	GGWCC	1 cut(s)	852
AxyI	CCTNAGG	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	326, 501
BbsI	GAAGAC	1 cut(s)	690
BbvI	GCAGC	6 cut(s)	32, 538, 733, 745, 769, 772
BccI	CCATC	3 cut(s)	437, 869, 899
BceAI	ACGGC	1 cut(s)	406
BciVI	GTATCC	1 cut(s)	872
BcnI	CCSGG	1 cut(s)	810
BfaI	CTAG	3 cut(s)	344, 498, 907
BfrI	CTTAAG	1 cut(s)	596
BfuI	GTATCC	1 cut(s)	872
BglII	AGATCT	1 cut(s)	726
BisI	GCNGC	6 cut(s)	21, 552, 747, 759, 783, 786
BlsI	GCNGC	6 cut(s)	22, 553, 748, 760, 784, 787
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	1 cut(s)	810
Bme18I	GGWCC	1 cut(s)	852
BmgT120I	GGNCC	2 cut(s)	97, 852
BmiI	GGNNCC	3 cut(s)	98, 328, 503
BmrFI	CCNGG	1 cut(s)	810
BmrI	ACTGGG	2 cut(s)	103, 493
BmsI	GCATC	5 cut(s)	233, 297, 349, 421, 565
BmuI	ACTGGG	2 cut(s)	103, 493
BpiI	GAAGAC	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	810
BsaWI	WCCGGW	1 cut(s)	329
BsaXI	ACNNNNNCTCC	6 cut(s)	420, 450, 538, 568, 872, 902
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 484
Bse1I	ACTGG	3 cut(s)	98, 478, 488
Bse21I	CCTNAGG	1 cut(s)	139
Bse3DI	GCAATG	5 cut(s)	23, 51, 193, 244, 704
BseGI	GGATG	4 cut(s)	248, 448, 478, 493
BseLI	CCNNNNNNNGG	2 cut(s)	417, 484
BseMI	GCAATG	5 cut(s)	23, 51, 193, 244, 704
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	3 cut(s)	98, 478, 488
BseRI	GAGGAG	2 cut(s)	400, 877
BseXI	GCAGC	6 cut(s)	32, 538, 733, 745, 769, 772
BseYI	CCCAGC	2 cut(s)	318, 761
BsgI	GTGCAG	2 cut(s)	702, 732
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	4 cut(s)	99, 192, 421, 606
BshNI	GGYRCC	2 cut(s)	326, 501
BsiSI	CCGG	2 cut(s)	330, 809
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	417, 484
BsmFI	GGGAC	1 cut(s)	549
BsnI	GGCC	4 cut(s)	99, 192, 421, 606
Bsp143I	GATC	2 cut(s)	726, 868
Bsp68I	TCGCGA	1 cut(s)	86
BspACI	CCGC	4 cut(s)	78, 215, 364, 768
BspANI	GGCC	4 cut(s)	99, 192, 421, 606
BspCNI	CTCAG	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	3 cut(s)	98, 328, 503
BspT107I	GGYRCC	2 cut(s)	326, 501
BspTI	CTTAAG	1 cut(s)	596
BsrBI	CCGCTC	1 cut(s)	768
BsrDI	GCAATG	5 cut(s)	23, 51, 193, 244, 704
BsrI	ACTGG	3 cut(s)	98, 478, 488
BssMI	GATC	2 cut(s)	726, 868
Bst4CI	ACNGT	2 cut(s)	224, 561
Bst6I	CTCTTC	1 cut(s)	418
BstAFI	CTTAAG	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	76, 364
BstDEI	CTNAG	2 cut(s)	139, 733
BstENI	CCTNNNNNAGG	1 cut(s)	415
BstF5I	GGATG	4 cut(s)	248, 448, 478, 493
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	2 cut(s)	729, 871
BstMBI	GATC	2 cut(s)	726, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 716, 755
BstNSI	RCATGY	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	808
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	6 cut(s)	32, 538, 733, 745, 769, 772
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	1 cut(s)	726
BstYI	RGATCY	1 cut(s)	726
Bsu36I	CCTNAGG	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	872
BsuRI	GGCC	4 cut(s)	99, 192, 421, 606
BtsCI	GGATG	4 cut(s)	248, 448, 478, 493
BtsIMutI	CAGTG	2 cut(s)	220, 566
BtuMI	TCGCGA	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	76, 364
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	97, 852
CseI	GACGC	1 cut(s)	695
Csp6I	GTAC	5 cut(s)	135, 327, 481, 502, 655
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	3 cut(s)	132, 844, 902
CviQI	GTAC	5 cut(s)	135, 327, 481, 502, 655
DdeI	CTNAG	2 cut(s)	139, 733
DpnI	GATC	2 cut(s)	728, 870
DpnII	GATC	2 cut(s)	726, 868
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
EciI	GGCGGA	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	852
Eco57I	CTGAAG	2 cut(s)	375, 690
Eco81I	CCTNAGG	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	415
FaeI	CATG	3 cut(s)	135, 847, 905
FalI	AAGNNNNNCTT	2 cut(s)	716, 748
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	3 cut(s)	131, 843, 901
FauI	CCCGC	2 cut(s)	208, 371
Fnu4HI	GCNGC	6 cut(s)	21, 552, 747, 759, 783, 786
FokI	GGATG	4 cut(s)	255, 455, 485, 500
Fsp4HI	GCNGC	6 cut(s)	21, 552, 747, 759, 783, 786
FspBI	CTAG	3 cut(s)	344, 498, 907
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	6 cut(s)	21, 552, 747, 759, 783, 786
GsaI	CCCAGC	2 cut(s)	322, 765
HaeIII	GGCC	4 cut(s)	99, 192, 421, 606
HapII	CCGG	2 cut(s)	330, 809
HgaI	GACGC	1 cut(s)	695
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	3 cut(s)	135, 847, 905
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	3 cut(s)	81, 738, 898
HpaII	CCGG	2 cut(s)	330, 809
HphI	GGTGA	2 cut(s)	664, 677
Hpy166II	GTNNAC	4 cut(s)	160, 451, 541, 657
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	5 cut(s)	85, 572, 680, 872, 895
Hpy8I	GTNNAC	4 cut(s)	160, 451, 541, 657
HpyAV	CCTTC	3 cut(s)	107, 458, 517
HpyCH4III	ACNGT	2 cut(s)	224, 561
HpyCH4V	TGCA	5 cut(s)	74, 246, 593, 719, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 716, 755
HpyF3I	CTNAG	2 cut(s)	139, 733
Hsp92II	CATG	3 cut(s)	135, 847, 905
HspAI	GCGC	1 cut(s)	512
KpnI	GGTACC	2 cut(s)	330, 505
Kzo9I	GATC	2 cut(s)	726, 868
LmnI	GCTCC	3 cut(s)	559, 765, 890
Lsp1109I	GCAGC	6 cut(s)	32, 538, 733, 745, 769, 772
LweI	GCATC	5 cut(s)	233, 297, 349, 421, 565
MaeI	CTAG	3 cut(s)	344, 498, 907
MaeIII	GTNAC	4 cut(s)	218, 224, 404, 670
MalI	GATC	2 cut(s)	728, 870
MbiI	CCGCTC	1 cut(s)	768
MboI	GATC	2 cut(s)	726, 868
MboII	GAAGA	6 cut(s)	368, 405, 695, 721, 736, 797
MflI	RGATCY	1 cut(s)	726
MluCI	AATT	3 cut(s)	9, 629, 820
MlyI	GAGTC	1 cut(s)	732
MmeI	TCCRAC	1 cut(s)	565
MroXI	GAANNNNTTC	2 cut(s)	392, 728
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	130
MspCI	CTTAAG	1 cut(s)	596
MspI	CCGG	2 cut(s)	330, 809
MspR9I	CCNGG	1 cut(s)	810
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	243, 716, 755
NciI	CCSGG	1 cut(s)	810
NdeII	GATC	2 cut(s)	726, 868
NlaIII	CATG	3 cut(s)	135, 847, 905
NlaIV	GGNNCC	3 cut(s)	98, 328, 503
NmuCI	GTSAC	4 cut(s)	218, 224, 404, 670
NruI	TCGCGA	1 cut(s)	86
NspI	RCATGY	1 cut(s)	135
PceI	AGGCCT	1 cut(s)	606
PciI	ACATGT	1 cut(s)	131
PdmI	GAANNNNTTC	2 cut(s)	392, 728
PfeI	GAWTC	2 cut(s)	81, 898
PkrI	GCNGC	6 cut(s)	22, 553, 748, 760, 784, 787
PleI	GAGTC	1 cut(s)	732
PpsI	GAGTC	1 cut(s)	732
PscI	ACATGT	1 cut(s)	131
PspFI	CCCAGC	2 cut(s)	318, 761
PspN4I	GGNNCC	3 cut(s)	98, 328, 503
PspPI	GGNCC	2 cut(s)	97, 852
PsuI	RGATCY	1 cut(s)	726
RruI	TCGCGA	1 cut(s)	86
RsaI	GTAC	5 cut(s)	136, 328, 482, 503, 656
RsaNI	GTAC	5 cut(s)	135, 327, 481, 502, 655
RseI	CAYNNNNRTG	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	6 cut(s)	21, 552, 747, 759, 783, 786
Sau3AI	GATC	2 cut(s)	726, 868
Sau96I	GGNCC	2 cut(s)	97, 852
ScaI	AGTACT	1 cut(s)	482
SchI	GAGTC	1 cut(s)	732
ScrFI	CCNGG	1 cut(s)	810
SfaNI	GCATC	5 cut(s)	233, 297, 349, 421, 565
SinI	GGWCC	1 cut(s)	852
SmiMI	CAYNNNNRTG	1 cut(s)	130
SmlI	CTYRAG	2 cut(s)	596, 753
SmoI	CTYRAG	2 cut(s)	596, 753
Sse9I	AATT	3 cut(s)	9, 629, 820
SseBI	AGGCCT	1 cut(s)	606
SsiI	CCGC	4 cut(s)	78, 215, 364, 768
SspMI	CTAG	3 cut(s)	344, 498, 907
StuI	AGGCCT	1 cut(s)	606
StyD4I	CCNGG	1 cut(s)	808
TaaI	ACNGT	2 cut(s)	224, 561
TaqI	TCGA	2 cut(s)	456, 681
TasI	AATT	3 cut(s)	9, 629, 820
TatI	WGTACW	2 cut(s)	480, 654
TfiI	GAWTC	2 cut(s)	81, 898
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	2 cut(s)	227, 566
TseFI	GTSAC	4 cut(s)	218, 224, 404, 670
TseI	GCWGC	6 cut(s)	20, 551, 746, 758, 782, 785
Tsp45I	GTSAC	4 cut(s)	218, 224, 404, 670
TspDTI	ATGAA	2 cut(s)	126, 339
TspRI	CASTG	2 cut(s)	227, 566
Vha464I	CTTAAG	1 cut(s)	596
VpaK11BI	GGWCC	1 cut(s)	852
XagI	CCTNNNNNAGG	1 cut(s)	415
XapI	RAATTY	1 cut(s)	820
XceI	RCATGY	1 cut(s)	135
XmnI	GAANNNNTTC	2 cut(s)	392, 728
XspI	CTAG	3 cut(s)	344, 498, 907
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.