Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002109

Physical Location & Seq

Genomic Coordinates Reverse (-)

21499112 .. 21500303

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGTTGGGGTTGGGCAATCTACGAGGGAGTGGTGGCGTTGGGATCGCTTGGGCTGCTGGGATGGGCGGGGCTGTGGTTCTTGAACCGAAGGCTCTACAAAGAGTACGAAGAGAAGAGGGTCTTAGTTCAGATCATTTTCAGCGTCGTCTTCGCCTTCTCCTGCAATCTTCTGCAGCTCGTCCTCTTCGTGATCATCCCCCTTCTCTCCCAAAGGGCCCGATGGCTCAACTGGAAGCTCGATTTGTTTTGTCTCATACTGTTACTGGTTTTCATGTTGCCTTATTATCATTGTTTCTTGATGCTCTGCAACAATGGGTTTCGGAAGGAACGCGCTGCTCTTGGATCCTTCTTGTTCTTGCTCTCCTTCCTTTATGCTTTTTGGCGCATGGGCATTCACTTCCCTATGCCTTCCCCCGATAAAGGCTTCTTCACCATGCCTCAGTTGGTCAGTCGCATTGGCGTCATTGGCGTTAGTGTCATGGCTGTCTTGTCCGGTTTTGGAGCTGTCAATTTGCCCTATAGTTACTTATCTCTCCTTATCCGAGAAATTGAGGAAACTGAGATCAAGTCCTTGGAAACACAGCTCATGCATTCCATCGAGACTTGTATTGCTAAGAAGAAGAAAATCATTCTTTCTCAAATGGAGATGGAACGCATTCAAGGACCAGAAGAGAAATTAAAAGCTAGATCGATCGGAGCTAGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010228 GO:0010427 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0019840 GO:0019899 GO:0022414 GO:0031406 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033293 GO:0033554 GO:0033993 GO:0035639 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051020 GO:0051716 GO:0061458 GO:0070417 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098827 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

237

Amino Acids

27.13

Weight (kDa)

9.22

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64990 AT1G64990 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630
fragaria_vesca	FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230
malus_domestica	MD01G1239200.v1.1 MD07G1310900.v1.1
prunus_persica	Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1
pyrus_communis	pycom01g24650 pycom07g28320
rosa_chinensis	RchiOBHm_Chr1g0384591
rosa_laevigata	RLG00000026029
rosa_multiflora	Rmu_co8335957.1_g000001 Rmu_sc0006005.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276560
rosa_rugosa	Rorug01G0449600 Rorug01G0449700 Rorug01G0449800 Rorug01G0449900 Rorug01G0450000
rosa_samantha	Rh1AG474400 Rh1BG432400 Rh1CG445600 Rh1DG465100
rosa_wichuraiana	Rw1G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	333
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	3 cut(s)	52, 339, 352
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	2 cut(s)	85, 662
AluBI	AGCT	6 cut(s)	178, 238, 506, 586, 686, 701
AluI	AGCT	6 cut(s)	178, 238, 506, 586, 686, 701
Alw26I	GTCTC	2 cut(s)	257, 596
AlwI	GGATC	3 cut(s)	52, 339, 352
AoxI	GGCC	1 cut(s)	216
ApaI	GGGCCC	1 cut(s)	220
ApeKI	GCWGC	3 cut(s)	55, 175, 335
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	2 cut(s)	335, 387
AspS9I	GGNCC	3 cut(s)	216, 217, 665
AsuHPI	GGTGA	1 cut(s)	424
AsuNHI	GCTAGC	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	42, 187, 322
BccI	CCATC	4 cut(s)	57, 216, 605, 643
BclI	TGATCA	1 cut(s)	192
BcoDI	GTCTC	2 cut(s)	257, 596
BfaI	CTAG	2 cut(s)	687, 702
BfmI	CTRYAG	2 cut(s)	173, 520
BisI	GCNGC	3 cut(s)	56, 176, 336
BlsI	GCNGC	3 cut(s)	57, 177, 337
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	3 cut(s)	216, 217, 665
BmiI	GGNNCC	2 cut(s)	218, 346
BmsI	GCATC	1 cut(s)	291
BmtI	GCTAGC	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	692
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	573
BsaWI	WCCGGW	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	236, 270
BseCI	ATCGAT	1 cut(s)	692
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	2 cut(s)	68, 195
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMII	CTCAG	2 cut(s)	455, 552
BseNI	ACTGG	2 cut(s)	236, 270
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	3 cut(s)	42, 187, 322
BseYI	CCCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	696
BshFI	GGCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	692
BsiEI	CGRYCG	1 cut(s)	696
BsiSI	CCGG	1 cut(s)	495
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	2 cut(s)	257, 596
BsmI	GAATGC	3 cut(s)	393, 592, 657
BsnI	GGCC	1 cut(s)	218
Bsp120I	GGGCCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	7 cut(s)	44, 132, 192, 344, 564, 689, 693
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	454, 553
BspDI	ATCGAT	1 cut(s)	692
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	218, 346
BspMAI	CTGCAG	1 cut(s)	177
BspOI	GCTAGC	1 cut(s)	705
BspPI	GGATC	3 cut(s)	52, 339, 352
BsrI	ACTGG	2 cut(s)	236, 270
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	7 cut(s)	44, 132, 192, 344, 564, 689, 693
BssNI	GRCGYC	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	4 cut(s)	105, 110, 191, 666
BstACI	GRCGYC	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	703
BstDEI	CTNAG	4 cut(s)	124, 441, 561, 615
BstF5I	GGATG	2 cut(s)	68, 195
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	335, 387
BstKTI	GATC	7 cut(s)	47, 135, 195, 347, 567, 692, 696
BstMAI	GTCTC	2 cut(s)	257, 596
BstMBI	GATC	7 cut(s)	44, 132, 192, 344, 564, 689, 693
BstMCI	CGRYCG	1 cut(s)	696
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 468
BstSFI	CTRYAG	2 cut(s)	173, 520
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	42, 187, 322
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
Bsu15I	ATCGAT	1 cut(s)	692
BsuRI	GGCC	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	692
BtsCI	GGATG	2 cut(s)	68, 195
Cac8I	GCNNGC	1 cut(s)	703
CfoI	GCGC	2 cut(s)	335, 387
Cfr13I	GGNCC	3 cut(s)	216, 217, 665
ClaI	ATCGAT	1 cut(s)	692
CseI	GACGC	2 cut(s)	133, 451
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	5 cut(s)	274, 388, 436, 481, 589
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	4 cut(s)	124, 441, 561, 615
DpnI	GATC	7 cut(s)	46, 134, 194, 346, 566, 691, 695
DpnII	GATC	7 cut(s)	44, 132, 192, 344, 564, 689, 693
Eam1104I	CTCTTC	4 cut(s)	105, 110, 191, 666
EarI	CTCTTC	4 cut(s)	105, 110, 191, 666
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	573
EcoT22I	ATGCAT	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	5 cut(s)	277, 391, 439, 484, 592
FaiI	YATR	9 cut(s)	257, 275, 375, 389, 407, 437, 482, 522, 590
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	5 cut(s)	273, 387, 435, 480, 588
FauI	CCCGC	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	56, 176, 336
FokI	GGATG	2 cut(s)	75, 182
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	3 cut(s)	56, 176, 336
FspBI	CTAG	2 cut(s)	687, 702
GlaI	GCGC	2 cut(s)	334, 386
GluI	GCNGC	3 cut(s)	56, 176, 336
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	495
HgaI	GACGC	2 cut(s)	133, 451
HhaI	GCGC	2 cut(s)	335, 387
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	5 cut(s)	277, 391, 439, 484, 592
Hin6I	GCGC	2 cut(s)	333, 385
HinP1I	GCGC	2 cut(s)	333, 385
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	1 cut(s)	424
Hpy188I	TCNGA	4 cut(s)	132, 324, 545, 698
Hpy188III	TCNNGA	4 cut(s)	82, 190, 298, 601
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	7 cut(s)	84, 166, 212, 319, 358, 376, 420
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	165, 175, 309, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 468
HpyF3I	CTNAG	4 cut(s)	124, 441, 561, 615
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	5 cut(s)	277, 391, 439, 484, 592
HspAI	GCGC	2 cut(s)	333, 385
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	7 cut(s)	44, 132, 192, 344, 564, 689, 693
LmnI	GCTCC	2 cut(s)	503, 698
LpnPI	CCDG	6 cut(s)	44, 175, 217, 251, 508, 681
Lsp1109I	GCAGC	3 cut(s)	42, 187, 322
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	687, 702
MaeIII	GTNAC	2 cut(s)	261, 524
MalI	GATC	7 cut(s)	46, 134, 194, 346, 566, 691, 695
MboI	GATC	7 cut(s)	44, 132, 192, 344, 564, 689, 693
MboII	GAAGA	9 cut(s)	122, 127, 142, 161, 178, 421, 631, 634, 683
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	3 cut(s)	511, 549, 677
MnlI	CCTC	5 cut(s)	19, 111, 194, 450, 547
Mph1103I	ATGCAT	1 cut(s)	594
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	2 cut(s)	680, 709
MspI	CCGG	1 cut(s)	495
Mva1269I	GAATGC	3 cut(s)	393, 592, 657
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	55, 468
NdeII	GATC	7 cut(s)	44, 132, 192, 344, 564, 689, 693
NheI	GCTAGC	1 cut(s)	701
NlaIII	CATG	5 cut(s)	277, 391, 439, 484, 592
NlaIV	GGNNCC	2 cut(s)	218, 346
NsiI	ATGCAT	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	3 cut(s)	393, 592, 657
PdmI	GAANNNNTTC	1 cut(s)	657
PkrI	GCNGC	3 cut(s)	57, 177, 337
Ple19I	CGATCG	1 cut(s)	696
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	218, 346
PspOMI	GGGCCC	1 cut(s)	216
PspPI	GGNCC	3 cut(s)	216, 217, 665
PstI	CTGCAG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	696
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	680, 709
SatI	GCNGC	3 cut(s)	56, 176, 336
Sau3AI	GATC	7 cut(s)	44, 132, 192, 344, 564, 689, 693
Sau96I	GGNCC	3 cut(s)	216, 217, 665
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	6 cut(s)	180, 240, 508, 588, 688, 703
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	2 cut(s)	173, 520
SinI	GGWCC	1 cut(s)	665
Sse9I	AATT	3 cut(s)	511, 549, 677
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	687, 702
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	3 cut(s)	240, 600, 692
TasI	AATT	3 cut(s)	511, 549, 677
Tru1I	TTAA	2 cut(s)	680, 709
Tru9I	TTAA	2 cut(s)	680, 709
TseI	GCWGC	3 cut(s)	55, 175, 335
TspDTI	ATGAA	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	2 cut(s)	687, 702
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.