Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002109

Physical Location & Seq

Genomic Coordinates Reverse (-)

13791642 .. 13797305

Gene Structure 5664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27630.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCTTAAGATCTTGTCACCCACTTGTTGGACTACTTTACTTAAACACCCTTTTATCTTGAAAGGTTTCTTTTCAATGCCTCAGCTGGTCAGCAGAATCGGGGTCATTGGTGTGACCCTCATGGCCGTCTTATCGGGTTTTGGAGCTGTAAATTTGCCCTACAGTTATATATCGCTCTTTATTAGGGAGATTGAAGAATCAGAAATAAAATCGCTGGAAAGGCAACTGATGCAATCAATGGAGACTTGCATAGCTAAGAAGAAGAAAATTCTTTTATGTCAAGTTGAGGTGGAACGAAGTCTAGTATCAGAAGAGCATCAAAAGGGTAAATCTTTCTTTAGAAGATTTGTCGGGACTGTTGTGCGGTCGGTTCAAGATGACCAAAAGGAGCAAGATATAAAACTAATGGAGGCAGAGGTGGAAGGTTTAGAAGAGCTGTCAAAGCAGCTATTCTTGGAAATTTATGAACTCCGCCAAGCAAAGGATGCTGCTGCTTTTTCTCGAACTTGGAAGGGTCATGTGCAGAACTTTCTTGGCTATGCGTGTTCCATTTACTGTGTGTATAAGATGTTAAAGTCTCTACAAAGTGTCGTTTTCAAGGAGGCGGGCACGAAAGATCCTGTCACGATGATGATCAGCATATTCTTGCAGTTCTTTGATATAGGAGTAGATGCAGCATTGCTCTCACAGTATATTTCCCTGTTATTTATTGGGATGTTGATCGTGATATCAGTGAGGGGATTCTTGACGAATCTGATGAAGTTCTTCTTTGCAGTGTCGAGGGTTGGAAGTGGATCTTCAAGCAATGTTGTGCTCTTCCTATCAGAAATCATGGGAATGTACTTTTTGTCTTCCATTCTTCTTATAAGAAAAAGCTTGAGAAATGAGTACAGAGGGATAATAACAGATGTATTAGGCGGAGATATTCAGTTTGATTTCTATCATCGATGGTTTGATGCAATATTCGTGGCTAGCGCTTTTCTTTCTCTGCTTCTGCTTTCTGCGCACTACACATCTCGTCAAATTGATAAGCACCCAATAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010427 GO:0012505 GO:0016020 GO:0019840 GO:0019899 GO:0031406 GO:0031984 GO:0033293 GO:0033554 GO:0033993 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051020 GO:0051716 GO:0070417 GO:0071944 GO:0097305 GO:0098827 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

348

Amino Acids

39.67

Weight (kDa)

8.66

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPHR_N	PF12537	23 - 90	2.1e-24	The Golgi pH Regulator (GPHR) Family N-terminal
ABA_GPCR	PF12430	166 - 254	8.5e-19	Abscisic acid G-protein coupled receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64990 AT1G64990 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630
fragaria_vesca	FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230
malus_domestica	MD01G1239200.v1.1 MD07G1310900.v1.1
prunus_persica	Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1
pyrus_communis	pycom01g24650 pycom07g28320
rosa_chinensis	RchiOBHm_Chr1g0384591
rosa_laevigata	RLG00000026029
rosa_multiflora	Rmu_co8335957.1_g000001 Rmu_sc0006005.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276560
rosa_rugosa	Rorug01G0449600 Rorug01G0449700 Rorug01G0449800 Rorug01G0449900 Rorug01G0450000
rosa_samantha	Rh1AG474400 Rh1BG432400 Rh1CG445600 Rh1DG465100
rosa_wichuraiana	Rw1G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	866
Acc16I	TGCGCA	1 cut(s)	1005
AccB7I	CCANNNNNTGG	1 cut(s)	27
AciI	CCGC	4 cut(s)	364, 472, 605, 918
AclWI	GGATC	2 cut(s)	611, 802
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	151, 267, 459
AfaI	GTAC	2 cut(s)	842, 890
AfeI	AGCGCT	1 cut(s)	976
AfiI	CCNNNNNNNGG	2 cut(s)	27, 481
AflII	CTTAAG	1 cut(s)	5
AgsI	TTSAA	6 cut(s)	61, 75, 194, 374, 598, 801
AluBI	AGCT	6 cut(s)	85, 146, 254, 436, 448, 876
AluI	AGCT	6 cut(s)	85, 146, 254, 436, 448, 876
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	2 cut(s)	236, 582
AlwI	GGATC	2 cut(s)	611, 802
Aor51HI	AGCGCT	1 cut(s)	976
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	4 cut(s)	445, 488, 491, 674
ApoI	RAATTY	3 cut(s)	151, 267, 459
Asp700I	GAANNNNTTC	2 cut(s)	65, 764
AspLEI	GCGC	2 cut(s)	977, 1006
AsuHPI	GGTGA	1 cut(s)	9
AsuNHI	GCTAGC	1 cut(s)	971
BaeGI	GKGCMC	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	843
Bbv12I	GWGCWC	1 cut(s)	816
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	4 cut(s)	457, 475, 478, 686
BccI	CCATC	1 cut(s)	942
BceAI	ACGGC	1 cut(s)	110
BclI	TGATCA	1 cut(s)	633
BcoDI	GTCTC	2 cut(s)	236, 582
BfaI	CTAG	2 cut(s)	302, 972
BfmI	CTRYAG	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	978
BfrI	CTTAAG	1 cut(s)	5
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	4 cut(s)	446, 489, 492, 675
BlsI	GCNGC	4 cut(s)	447, 490, 493, 676
BmsI	GCATC	5 cut(s)	219, 325, 475, 661, 946
BmtI	GCTAGC	1 cut(s)	975
BpiI	GAAGAC	1 cut(s)	843
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	898
Bsa29I	ATCGAT	1 cut(s)	946
BsaBI	GATNNNNATC	3 cut(s)	632, 719, 939
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 481
Bse3DI	GCAATG	2 cut(s)	677, 811
Bse8I	GATNNNNATC	3 cut(s)	632, 719, 939
BseCI	ATCGAT	1 cut(s)	946
BseGI	GGATG	2 cut(s)	490, 720
BseJI	GATNNNNATC	3 cut(s)	632, 719, 939
BseLI	CCNNNNNNNGG	2 cut(s)	27, 481
BseMI	GCAATG	2 cut(s)	677, 811
BseMII	CTCAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	611
BseXI	GCAGC	4 cut(s)	457, 475, 478, 686
BsgI	GTGCAG	1 cut(s)	542
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	946
BsiEI	CGRYCG	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	816
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	27, 481
BsmAI	GTCTC	2 cut(s)	236, 582
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	611, 816
Bsp143I	GATC	5 cut(s)	9, 616, 633, 720, 794
BspACI	CCGC	4 cut(s)	364, 472, 605, 918
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	94
BspDI	ATCGAT	1 cut(s)	946
BspOI	GCTAGC	1 cut(s)	975
BspPI	GGATC	2 cut(s)	611, 802
BspQI	GCTCTTC	3 cut(s)	306, 426, 821
BspTI	CTTAAG	1 cut(s)	5
BsrDI	GCAATG	2 cut(s)	677, 811
BssMI	GATC	5 cut(s)	9, 616, 633, 720, 794
Bst4CI	ACNGT	4 cut(s)	164, 358, 557, 690
Bst6I	CTCTTC	3 cut(s)	306, 426, 821
BstAFI	CTTAAG	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	229, 485
BstC8I	GCNNGC	2 cut(s)	607, 973
BstDEI	CTNAG	2 cut(s)	81, 255
BstF5I	GGATG	2 cut(s)	490, 720
BstH2I	RGCGCY	1 cut(s)	978
BstHHI	GCGC	2 cut(s)	977, 1006
BstKTI	GATC	5 cut(s)	12, 619, 636, 723, 797
BstMAI	GTCTC	2 cut(s)	236, 582
BstMBI	GATC	5 cut(s)	9, 616, 633, 720, 794
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 229, 442, 485, 1003
BstSFI	CTRYAG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	611
BstV1I	GCAGC	4 cut(s)	457, 475, 478, 686
BstV2I	GAAGAC	1 cut(s)	843
BstX2I	RGATCY	3 cut(s)	9, 616, 794
BstYI	RGATCY	3 cut(s)	9, 616, 794
Bsu15I	ATCGAT	1 cut(s)	946
BsuRI	GGCC	1 cut(s)	125
BsuTUI	ATCGAT	1 cut(s)	946
BtsCI	GGATG	2 cut(s)	490, 720
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	2 cut(s)	738, 780
Cac8I	GCNNGC	2 cut(s)	607, 973
CfoI	GCGC	2 cut(s)	977, 1006
ClaI	ATCGAT	1 cut(s)	946
Csp6I	GTAC	2 cut(s)	841, 889
CspCI	CAANNNNNGTGG	2 cut(s)	948, 983
CviAII	CATG	3 cut(s)	121, 518, 832
CviJI	RGCY	9 cut(s)	85, 125, 146, 254, 436, 448, 537, 876, 971
CviKI_1	RGCY	9 cut(s)	85, 125, 146, 254, 436, 448, 537, 876, 971
CviQI	GTAC	2 cut(s)	841, 889
DdeI	CTNAG	2 cut(s)	81, 255
DpnI	GATC	5 cut(s)	11, 618, 635, 722, 796
DpnII	GATC	5 cut(s)	9, 616, 633, 720, 794
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	3 cut(s)	306, 426, 821
EarI	CTCTTC	3 cut(s)	306, 426, 821
EciI	GGCGGA	2 cut(s)	461, 933
Eco32I	GATATC	1 cut(s)	729
Eco47III	AGCGCT	1 cut(s)	976
EcoRV	GATATC	1 cut(s)	729
FaeI	CATG	3 cut(s)	124, 521, 835
FalI	AAGNNNNNCTT	4 cut(s)	752, 784, 781, 813
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	3 cut(s)	120, 517, 831
FauI	CCCGC	1 cut(s)	598
FbaI	TGATCA	1 cut(s)	633
Fnu4HI	GCNGC	4 cut(s)	446, 489, 492, 675
FokI	GGATG	2 cut(s)	497, 727
Fsp4HI	GCNGC	4 cut(s)	446, 489, 492, 675
FspBI	CTAG	2 cut(s)	302, 972
FspI	TGCGCA	1 cut(s)	1005
GlaI	GCGC	2 cut(s)	976, 1005
GluI	GCNGC	4 cut(s)	446, 489, 492, 675
HaeII	RGCGCY	1 cut(s)	978
HaeIII	GGCC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	977, 1006
Hin1II	CATG	3 cut(s)	124, 521, 835
Hin6I	GCGC	2 cut(s)	975, 1004
HinP1I	GCGC	2 cut(s)	975, 1004
HindIII	AAGCTT	1 cut(s)	874
HinfI	GANTC	4 cut(s)	96, 197, 741, 751
HphI	GGTGA	1 cut(s)	9
Hpy188I	TCNGA	4 cut(s)	202, 310, 756, 826
Hpy188III	TCNNGA	7 cut(s)	58, 352, 374, 501, 625, 724, 745
HpyAV	CCTTC	2 cut(s)	416, 505
HpyCH4III	ACNGT	4 cut(s)	164, 358, 557, 690
HpyCH4V	TGCA	7 cut(s)	232, 249, 523, 649, 674, 773, 959
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 229, 442, 485, 1003
HpyF3I	CTNAG	2 cut(s)	81, 255
Hsp92II	CATG	3 cut(s)	124, 521, 835
HspAI	GCGC	2 cut(s)	975, 1004
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	5 cut(s)	9, 616, 633, 720, 794
LguI	GCTCTTC	3 cut(s)	306, 426, 821
LmnI	GCTCC	2 cut(s)	143, 388
LpnPI	CCDG	4 cut(s)	71, 200, 633, 713
Lsp1109I	GCAGC	4 cut(s)	457, 475, 478, 686
LweI	GCATC	5 cut(s)	219, 325, 475, 661, 946
MaeI	CTAG	2 cut(s)	302, 972
MaeIII	GTNAC	3 cut(s)	15, 112, 622
MalI	GATC	5 cut(s)	11, 618, 635, 722, 796
MboI	GATC	5 cut(s)	9, 616, 633, 720, 794
MflI	RGATCY	3 cut(s)	9, 616, 794
MhlI	GDGCHC	2 cut(s)	611, 816
MluCI	AATT	4 cut(s)	151, 267, 459, 1023
MmeI	TCCRAC	2 cut(s)	8, 766
MnlI	CCTC	9 cut(s)	90, 128, 280, 403, 409, 595, 729, 774, 887
MroXI	GAANNNNTTC	2 cut(s)	65, 764
MseI	TTAA	3 cut(s)	6, 42, 572
MslI	CAYNNNNRTG	3 cut(s)	110, 629, 836
MspA1I	CMGCKG	1 cut(s)	85
MspCI	CTTAAG	1 cut(s)	5
MwoI	GCNNNNNNNGC	5 cut(s)	220, 229, 442, 485, 1003
NdeII	GATC	5 cut(s)	9, 616, 633, 720, 794
NheI	GCTAGC	1 cut(s)	971
NlaIII	CATG	3 cut(s)	124, 521, 835
NmuCI	GTSAC	3 cut(s)	15, 112, 622
NsbI	TGCGCA	1 cut(s)	1005
PciSI	GCTCTTC	3 cut(s)	306, 426, 821
PdmI	GAANNNNTTC	2 cut(s)	65, 764
PfeI	GAWTC	4 cut(s)	96, 197, 741, 751
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	447, 490, 493, 676
PsiI	TTATAA	1 cut(s)	866
PsuI	RGATCY	3 cut(s)	9, 616, 794
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	2 cut(s)	842, 890
RsaNI	GTAC	2 cut(s)	841, 889
RseI	CAYNNNNRTG	3 cut(s)	110, 629, 836
SapI	GCTCTTC	3 cut(s)	306, 426, 821
SaqAI	TTAA	3 cut(s)	6, 42, 572
SatI	GCNGC	4 cut(s)	446, 489, 492, 675
Sau3AI	GATC	5 cut(s)	9, 616, 633, 720, 794
SduI	GDGCHC	2 cut(s)	611, 816
SfaNI	GCATC	5 cut(s)	219, 325, 475, 661, 946
SfcI	CTRYAG	1 cut(s)	160
SmiMI	CAYNNNNRTG	3 cut(s)	110, 629, 836
SmlI	CTYRAG	2 cut(s)	5, 877
SmoI	CTYRAG	2 cut(s)	5, 877
Sse9I	AATT	4 cut(s)	151, 267, 459, 1023
SsiI	CCGC	4 cut(s)	364, 472, 605, 918
SspI	AATATT	1 cut(s)	963
SspMI	CTAG	2 cut(s)	302, 972
TaaI	ACNGT	4 cut(s)	164, 358, 557, 690
TaqI	TCGA	3 cut(s)	502, 779, 946
TasI	AATT	4 cut(s)	151, 267, 459, 1023
TatI	WGTACW	2 cut(s)	840, 888
TfiI	GAWTC	4 cut(s)	96, 197, 741, 751
Tru1I	TTAA	3 cut(s)	6, 42, 572
Tru9I	TTAA	3 cut(s)	6, 42, 572
TscAI	CASTG	2 cut(s)	738, 780
TseFI	GTSAC	3 cut(s)	15, 112, 622
TseI	GCWGC	4 cut(s)	445, 488, 491, 674
Tsp45I	GTSAC	3 cut(s)	15, 112, 622
TspDTI	ATGAA	2 cut(s)	480, 773
TspRI	CASTG	2 cut(s)	738, 780
Van91I	CCANNNNNTGG	1 cut(s)	27
Vha464I	CTTAAG	1 cut(s)	5
XapI	RAATTY	3 cut(s)	151, 267, 459
XmnI	GAANNNNTTC	2 cut(s)	65, 764
XspI	CTAG	2 cut(s)	302, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.