Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002109

Physical Location & Seq

Genomic Coordinates Reverse (-)

27661812 .. 27666275

Gene Structure 4464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28320.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGGCGGGGCTGTGGTTCTTGAACCGAAGGCTCTACAAAGAGTACGAAGAGAAGAGGGTCTTAGTTCAGATCATCTTCAGCGTCGTCTTCGCCTTCTCCTGCAATCTTCTGCAGCTCGTCCTCTTCGATCGATCATCCCCTTTCTCTCCCAAAGGGCCCGATGGCTCAACTGGAAGCTGGATTTGTTTTGTCTCATACTGTTACTGGTTTTCATGTTACCTTATTATCATTGTTTCTTGATGCTCTGCAACAATGGGTTCCGGAAGGAACGCGCTGCTTTTGGATCCTTCTTGTTCTTGCTAGCCTTCCTTTATGCTTTTTGGCGCATGGGCATTCACTTCCCTATGCCTTCCCCTGATAAAGGCTTCTTCACCATGCCTCAGTTGGTCAGTCGCATTGGAGTCATTGGCGTTACTGTCATGGCTGTCTTGTCTGGTTTTGGAGCCGTCAATTTACCCTATAGTTACTTATCTCTCTTTATCCGAGAAATTGAGGAAACTGAGATCAAGTCCTTGGAAAGACAGCTCATGCAATCCATCGAGACTTGTATTGCTAAGAAGAAGAAAATCATTCTTTCTCAAATGGAGATGGAACGCATTCAAGGATCAGAAGAGAAATTAAAAGCTAGATCGATCTTTAAAAGAATTGTTGGCACTGTTGTGCGATCTGTGCAAGACGATCAAAAGGAGCAAGATATCAGAAACATGGAAGCAGAAGTGCTAGCATTGGAAGAGCTTTCAAAGCAGCTATTCCTAGAAATATACGAGCTTCGTCAAGCAAAGGAGGCTGCTGCTTATTCTCGAACCTGGAGGGGTCATATGCAGAACCTACTAGGTTATGCATGTTCAATCTACTGTGTATATAAAATGATTAAGTCTTTGCAAAGTGTAGTTTTCAAAGAGGCTGGCTCTGTGGATCCTGTGACGATGACAATTAGCATATTCTTGCAGTTCTTTGACATTGGTATCAATGCAGCATTGCTATCACAGTATATTTCACTCTTGTTCATTGGAATGTTGATTGTTATATCAGTTCGTGGATTCTTGACTAATTTAATGAAGTTCTTTTTTGCAGTTTCCAGAGTTGGAAGTGGATCTTCTAGCAATGTTGTATTGTTTCTGTCTGAAATTATGGGAATGTACTTTGTGTCCTCTATTCTATTGATAAGGAAAAGCTTGGCAACTGAGTACAGGATGATCGATCACAGACGTATTGGGTGGAGATATTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010228 GO:0010427 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0019840 GO:0019899 GO:0022414 GO:0031406 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033293 GO:0033554 GO:0033993 GO:0035639 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051020 GO:0051716 GO:0061458 GO:0070417 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098827 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

412

Amino Acids

47.27

Weight (kDa)

9.67

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64990 AT1G64990 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630
fragaria_vesca	FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230
malus_domestica	MD01G1239200.v1.1 MD07G1310900.v1.1
prunus_persica	Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1
pyrus_communis	pycom01g24650 pycom07g28320
rosa_chinensis	RchiOBHm_Chr1g0384591
rosa_laevigata	RLG00000026029
rosa_multiflora	Rmu_co8335957.1_g000001 Rmu_sc0006005.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276560
rosa_rugosa	Rorug01G0449600 Rorug01G0449700 Rorug01G0449800 Rorug01G0449900 Rorug01G0450000
rosa_samantha	Rh1AG474400 Rh1BG432400 Rh1CG445600 Rh1DG465100
rosa_wichuraiana	Rw1G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	261
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	6 cut(s)	279, 292, 613, 911, 924, 1102
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	3 cut(s)	45, 1142, 1190
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	5 cut(s)	23, 602, 741, 849, 898
AjnI	CCWGG	1 cut(s)	806
AleI	CACNNNNGTG	1 cut(s)	659
AluBI	AGCT	8 cut(s)	116, 178, 526, 626, 736, 748, 769, 1176
AluI	AGCT	8 cut(s)	116, 178, 526, 626, 736, 748, 769, 1176
Alw26I	GTCTC	2 cut(s)	197, 536
AlwI	GGATC	6 cut(s)	279, 292, 613, 911, 924, 1102
Aor13HI	TCCGGA	1 cut(s)	261
AoxI	GGCC	1 cut(s)	156
ApaI	GGGCCC	1 cut(s)	160
ApeKI	GCWGC	6 cut(s)	113, 275, 745, 788, 791, 974
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	2 cut(s)	275, 327
AspS9I	GGNCC	2 cut(s)	156, 157
AsuHPI	GGTGA	1 cut(s)	364
AsuNHI	GCTAGC	2 cut(s)	301, 721
BaeGI	GKGCMC	1 cut(s)	160
BaeI	ACNNNNGTAYC	2 cut(s)	949, 982
BamHI	GGATCC	2 cut(s)	284, 916
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	6 cut(s)	125, 262, 757, 775, 778, 986
BccI	CCATC	3 cut(s)	156, 545, 583
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	808
BcoDI	GTCTC	2 cut(s)	197, 536
BfaI	CTAG	6 cut(s)	302, 627, 722, 755, 833, 1101
BfmI	CTRYAG	2 cut(s)	111, 460
BisI	GCNGC	6 cut(s)	114, 276, 746, 789, 792, 975
BlsI	GCNGC	6 cut(s)	115, 277, 747, 790, 793, 976
Bme1390I	CCNGG	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	156, 157
BmiI	GGNNCC	5 cut(s)	158, 260, 286, 445, 918
BmrFI	CCNGG	1 cut(s)	808
BmsI	GCATC	1 cut(s)	231
BmtI	GCTAGC	2 cut(s)	305, 725
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	893, 925
BpmI	CTGGAG	1 cut(s)	829
Bsa29I	ATCGAT	3 cut(s)	131, 632, 1200
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	176, 210
Bse3DI	GCAATG	2 cut(s)	977, 1111
BseAI	TCCGGA	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	808
BseCI	ATCGAT	3 cut(s)	131, 632, 1200
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	135, 1200
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMI	GCAATG	2 cut(s)	977, 1111
BseMII	CTCAG	3 cut(s)	395, 492, 1176
BseNI	ACTGG	2 cut(s)	176, 210
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	6 cut(s)	125, 262, 757, 775, 778, 986
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	158
BshVI	ATCGAT	3 cut(s)	131, 632, 1200
BsiEI	CGRYCG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	2 cut(s)	197, 536
BsmI	GAATGC	2 cut(s)	333, 597
BsnI	GGCC	1 cut(s)	158
Bsp120I	GGGCCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp13I	TCCGGA	1 cut(s)	261
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	3 cut(s)	394, 493, 1177
BspDI	ATCGAT	3 cut(s)	131, 632, 1200
BspEI	TCCGGA	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	5 cut(s)	158, 260, 286, 445, 918
BspMAI	CTGCAG	1 cut(s)	115
BspOI	GCTAGC	2 cut(s)	305, 725
BspPI	GGATC	6 cut(s)	279, 292, 613, 911, 924, 1102
BspQI	GCTCTTC	1 cut(s)	726
BsrDI	GCAATG	2 cut(s)	977, 1111
BsrI	ACTGG	2 cut(s)	176, 210
BssECI	CCNNGG	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	808
Bst4CI	ACNGT	5 cut(s)	201, 418, 658, 857, 990
Bst6I	CTCTTC	5 cut(s)	43, 48, 129, 606, 726
BstC8I	GCNNGC	3 cut(s)	303, 723, 907
BstDEI	CTNAG	5 cut(s)	62, 381, 501, 555, 1185
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	135, 1200
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	2 cut(s)	275, 327
BstMAI	GTCTC	2 cut(s)	197, 536
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	3 cut(s)	670, 742, 785
BstNI	CCWGG	1 cut(s)	808
BstNSI	RCATGY	1 cut(s)	846
BstSCI	CCNGG	1 cut(s)	806
BstSFI	CTRYAG	2 cut(s)	111, 460
BstSLI	GKGCMC	1 cut(s)	160
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	6 cut(s)	125, 262, 757, 775, 778, 986
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	3 cut(s)	284, 916, 1094
BstYI	RGATCY	3 cut(s)	284, 916, 1094
Bsu15I	ATCGAT	3 cut(s)	131, 632, 1200
BsuRI	GGCC	1 cut(s)	158
BsuTUI	ATCGAT	3 cut(s)	131, 632, 1200
BtsCI	GGATG	2 cut(s)	135, 1200
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	3 cut(s)	303, 723, 907
CfoI	GCGC	2 cut(s)	275, 327
Cfr13I	GGNCC	2 cut(s)	156, 157
ClaI	ATCGAT	3 cut(s)	131, 632, 1200
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	44, 1141, 1189
CviAII	CATG	7 cut(s)	214, 328, 376, 421, 529, 706, 843
CviQI	GTAC	3 cut(s)	44, 1141, 1189
DdeI	CTNAG	5 cut(s)	62, 381, 501, 555, 1185
DraI	TTTAAA	1 cut(s)	640
Eam1104I	CTCTTC	5 cut(s)	43, 48, 129, 606, 726
EarI	CTCTTC	5 cut(s)	43, 48, 129, 606, 726
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	62
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	806
EcoRV	GATATC	1 cut(s)	697
EcoT14I	CCWWGG	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	844
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	7 cut(s)	217, 331, 379, 424, 532, 709, 846
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 1081, 1113
FatI	CATG	7 cut(s)	213, 327, 375, 420, 528, 705, 842
FauNDI	CATATG	1 cut(s)	819
Fnu4HI	GCNGC	6 cut(s)	114, 276, 746, 789, 792, 975
FokI	GGATG	2 cut(s)	122, 1207
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	6 cut(s)	114, 276, 746, 789, 792, 975
FspBI	CTAG	6 cut(s)	302, 627, 722, 755, 833, 1101
GlaI	GCGC	2 cut(s)	274, 326
GluI	GCNGC	6 cut(s)	114, 276, 746, 789, 792, 975
GsuI	CTGGAG	1 cut(s)	829
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	262
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	275, 327
Hin1II	CATG	7 cut(s)	217, 331, 379, 424, 532, 709, 846
Hin6I	GCGC	2 cut(s)	273, 325
HinP1I	GCGC	2 cut(s)	273, 325
HindIII	AAGCTT	1 cut(s)	1174
HinfI	GANTC	2 cut(s)	402, 1041
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	5 cut(s)	70, 485, 610, 701, 1126
Hpy188III	TCNNGA	7 cut(s)	20, 238, 262, 541, 801, 1045, 1080
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	6 cut(s)	22, 104, 259, 298, 316, 360
HpyCH4III	ACNGT	5 cut(s)	201, 418, 658, 857, 990
HpyCH4IV	ACGT	1 cut(s)	1210
HpyF10VI	GCNNNNNNNGC	3 cut(s)	670, 742, 785
HpyF3I	CTNAG	5 cut(s)	62, 381, 501, 555, 1185
HpySE526I	ACGT	1 cut(s)	1210
Hsp92II	CATG	7 cut(s)	217, 331, 379, 424, 532, 709, 846
HspAI	GCGC	2 cut(s)	273, 325
Kpn2I	TCCGGA	1 cut(s)	261
LguI	GCTCTTC	1 cut(s)	726
LmnI	GCTCC	2 cut(s)	443, 688
Lsp1109I	GCAGC	6 cut(s)	125, 262, 757, 775, 778, 986
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	6 cut(s)	302, 627, 722, 755, 833, 1101
MaeII	ACGT	1 cut(s)	1210
MaeIII	GTNAC	5 cut(s)	201, 216, 412, 464, 922
MflI	RGATCY	3 cut(s)	284, 916, 1094
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	7 cut(s)	451, 489, 617, 645, 933, 1051, 1128
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	1066
MnlI	CCTC	8 cut(s)	49, 132, 390, 487, 778, 804, 895, 1162
Mph1103I	ATGCAT	1 cut(s)	844
MroI	TCCGGA	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	4 cut(s)	620, 639, 873, 1055
MslI	CAYNNNNRTG	2 cut(s)	659, 1013
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	808
Mva1269I	GAATGC	2 cut(s)	333, 597
MvaI	CCWGG	1 cut(s)	808
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	670, 742, 785
NdeI	CATATG	1 cut(s)	819
NheI	GCTAGC	2 cut(s)	301, 721
NlaIII	CATG	7 cut(s)	217, 331, 379, 424, 532, 709, 846
NlaIV	GGNNCC	5 cut(s)	158, 260, 286, 445, 918
NmuCI	GTSAC	1 cut(s)	922
NsiI	ATGCAT	1 cut(s)	844
NspI	RCATGY	1 cut(s)	846
OliI	CACNNNNGTG	1 cut(s)	659
PciSI	GCTCTTC	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PctI	GAATGC	2 cut(s)	333, 597
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	1041
PkrI	GCNGC	6 cut(s)	115, 277, 747, 790, 793, 976
Ple19I	CGATCG	1 cut(s)	131
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	806
PspGI	CCWGG	1 cut(s)	806
PspN4I	GGNNCC	5 cut(s)	158, 260, 286, 445, 918
PspOMI	GGGCCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	156, 157
PstI	CTGCAG	1 cut(s)	115
PsuI	RGATCY	3 cut(s)	284, 916, 1094
PvuI	CGATCG	1 cut(s)	131
RsaI	GTAC	3 cut(s)	45, 1142, 1190
RsaNI	GTAC	3 cut(s)	44, 1141, 1189
RseI	CAYNNNNRTG	2 cut(s)	659, 1013
SapI	GCTCTTC	1 cut(s)	726
SaqAI	TTAA	4 cut(s)	620, 639, 873, 1055
SatI	GCNGC	6 cut(s)	114, 276, 746, 789, 792, 975
Sau96I	GGNCC	2 cut(s)	156, 157
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	808
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	2 cut(s)	111, 460
SmiMI	CAYNNNNRTG	2 cut(s)	659, 1013
Sse9I	AATT	7 cut(s)	451, 489, 617, 645, 933, 1051, 1128
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	6 cut(s)	302, 627, 722, 755, 833, 1101
StyD4I	CCNGG	1 cut(s)	806
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	5 cut(s)	201, 418, 658, 857, 990
TaiI	ACGT	1 cut(s)	1213
TaqI	TCGA	6 cut(s)	127, 131, 540, 632, 802, 1200
TasI	AATT	7 cut(s)	451, 489, 617, 645, 933, 1051, 1128
TatI	WGTACW	2 cut(s)	1140, 1188
TfiI	GAWTC	1 cut(s)	1041
Tru1I	TTAA	4 cut(s)	620, 639, 873, 1055
Tru9I	TTAA	4 cut(s)	620, 639, 873, 1055
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	6 cut(s)	113, 275, 745, 788, 791, 974
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	3 cut(s)	202, 997, 1073
TspRI	CASTG	1 cut(s)	661
XagI	CCTNNNNNAGG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	6 cut(s)	302, 627, 722, 755, 833, 1101
Zsp2I	ATGCAT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.