Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002109

Physical Location & Seq

Genomic Coordinates Reverse (-)

54533069 .. 54534885

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0449600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAAACACCACCCCTGAATGTGGATAATATGAATTATGATGAACGATTATATTTGATTAAGGATCTCATTAATTTGATCACTGATCTAGAGATGCATAATATCACATATGGGTATTTGAATTATGAAAATCTGCTTTACGCTAATGGAACGCTTAAAATGAGAGTAATACCAGATCCATCGCATCCCGACTTCAAACAAATGTGTGCGGACAGAAATATATTAACATTAAGGGAGGGGTTTGCTATCATTCTCGATCGGATTATGCCATATTCAAGAATTCCTAATGGCGTCCAAAGAGACTACAATCATTTTAAGCGCCTAACTGAGTTTAATCTTCCGATACGTAATTACAGTTGCCGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010228 GO:0010427 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0019840 GO:0019899 GO:0022414 GO:0031406 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033293 GO:0033554 GO:0033993 GO:0035639 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051020 GO:0051716 GO:0061458 GO:0070417 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098827 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

122

Amino Acids

14.54

Weight (kDa)

6.27

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64990 AT1G64990 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630
fragaria_vesca	FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230
malus_domestica	MD01G1239200.v1.1 MD07G1310900.v1.1
prunus_persica	Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1
pyrus_communis	pycom01g24650 pycom07g28320
rosa_chinensis	RchiOBHm_Chr1g0384591
rosa_laevigata	RLG00000026029
rosa_multiflora	Rmu_co8335957.1_g000001 Rmu_sc0006005.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276560
rosa_rugosa	Rorug01G0449600 Rorug01G0449700 Rorug01G0449800 Rorug01G0449900 Rorug01G0450000
rosa_samantha	Rh1AG474400 Rh1BG432400 Rh1CG445600 Rh1DG465100
rosa_wichuraiana	Rw1G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	2 cut(s)	72, 170
AcsI	RAATTY	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	121, 196, 276
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	72, 170
ApoI	RAATTY	1 cut(s)	279
AseI	ATTAAT	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	321
BccI	CCATC	1 cut(s)	187
BclI	TGATCA	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	322
BmsI	GCATC	2 cut(s)	84, 193
BsaAI	YACGTR	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	259
BsiEI	CGRYCG	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	294
Bsp143I	GATC	5 cut(s)	64, 78, 85, 175, 256
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	319
BspPI	GGATC	2 cut(s)	72, 170
BssMI	GATC	5 cut(s)	64, 78, 85, 175, 256
BssNI	GRCGYC	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	356
BstACI	GRCGYC	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	184
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	5 cut(s)	67, 81, 88, 178, 259
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	5 cut(s)	64, 78, 85, 175, 256
BstMCI	CGRYCG	1 cut(s)	259
BstSNI	TACGTA	1 cut(s)	347
BstX2I	RGATCY	2 cut(s)	64, 175
BstYI	RGATCY	2 cut(s)	64, 175
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	81
CfoI	GCGC	1 cut(s)	321
CseI	GACGC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	5 cut(s)	66, 80, 87, 177, 258
DpnII	GATC	5 cut(s)	64, 78, 85, 175, 256
Eco105I	TACGTA	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	78
FokI	GGATG	1 cut(s)	171
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	322
HapII	CCGG	1 cut(s)	361
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	291
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	261, 342
Hpy188III	TCNNGA	4 cut(s)	89, 188, 254, 276
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	1 cut(s)	291
HspAI	GCGC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	78
Kzo9I	GATC	5 cut(s)	64, 78, 85, 175, 256
LpnPI	CCDG	2 cut(s)	29, 186
LweI	GCATC	2 cut(s)	84, 193
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	346
MalI	GATC	5 cut(s)	66, 80, 87, 177, 258
MboI	GATC	5 cut(s)	64, 78, 85, 175, 256
MboII	GAAGA	1 cut(s)	329
MflI	RGATCY	2 cut(s)	64, 175
MluCI	AATT	5 cut(s)	34, 73, 121, 279, 349
MnlI	CCTC	1 cut(s)	229
Mph1103I	ATGCAT	1 cut(s)	99
MseI	TTAA	8 cut(s)	60, 72, 156, 224, 230, 315, 333, 367
MspI	CCGG	1 cut(s)	361
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	5 cut(s)	64, 78, 85, 175, 256
NsiI	ATGCAT	1 cut(s)	99
Ple19I	CGATCG	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	347
PshBI	ATTAAT	1 cut(s)	72
PsuI	RGATCY	2 cut(s)	64, 175
PvuI	CGATCG	1 cut(s)	259
SaqAI	TTAA	8 cut(s)	60, 72, 156, 224, 230, 315, 333, 367
Sau3AI	GATC	5 cut(s)	64, 78, 85, 175, 256
SetI	ASST	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	84, 193
SgeI	CNNG	6 cut(s)	28, 101, 185, 200, 266, 288
SnaBI	TACGTA	1 cut(s)	347
Sse9I	AATT	5 cut(s)	34, 73, 121, 279, 349
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	356
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	255
TasI	AATT	5 cut(s)	34, 73, 121, 279, 349
Tru1I	TTAA	8 cut(s)	60, 72, 156, 224, 230, 315, 333, 367
Tru9I	TTAA	8 cut(s)	60, 72, 156, 224, 230, 315, 333, 367
TscAI	CASTG	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	47, 57, 141
TspRI	CASTG	1 cut(s)	88
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	1 cut(s)	279
XbaI	TCTAGA	1 cut(s)	88
XspI	CTAG	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.