Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002109

Physical Location & Seq

Genomic Coordinates Reverse (-)

32547023 .. 32549281

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1239200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGTTGGGGTTGGGCAATCTACGAGGGAGTGGTGGCGTTGGGATCGCTAGGGCTGCTGGGATGGGCGGGGCTGTGGTTCTTGAACCGAAGGCTCTACAAAGAGTACGAAGAGAAGAGGGTCTTAGTTCAGATCATTTTCAGCGTCGTCTTCGCCTTCTCCTGCAATCTTCTGCAGCTCGTCCTCTTCGAGATCATCCCCTTTCTCTCGCAAAGGGCCCGGTGGCTCAACTGGAAGCTCGATTTGTTTTGTCTCATACTGTTACTGGTTTTCATGTTGCCTTATTATCATTGTTTCTTGATGCTCTGCAACAATGGGTTTCGGAAGGAACGCGCTGCTCTTGGATCCTTCTTATTCTTGCTCTCCTTCCTTTATGCTTTTTGGCGCATGGGCATTCACTTCCCTACGCCTTCCCCCGATAAAGGCTTCTTCACCATGCCTCAGTTGGTCAGTCGCATTGGCGTTACTGTCATGGCTGTCTTGTCCGGTTTTGGAGCTGTCAATTTGCCCTATAGTTACTTATCTCTCTTTATCCGAGAAATTGAGGAAACTGAGATCAAGTCCTTGGAAACACAGCTCATGCATTCCATCGAGACTTGTATTGCTAAGAAGAAGAAAATCATTCTTTCTCAAATGGAGATGGAACGCATTCAAGGACCAGAAGAGGTTCTCTTCACTATCCTATACTTTTCTGTTTCCAAAGTGTTAAAACTCGTGCACCTTGATTTCTATACTTTTATCGTATTTCAATGTGCTAACTCTATCATAATCTTATTCTGTTGTTCTAATTGGTGTTACTTAGAAACTGCATTTTGTATTAGCATATCTTTAAGGTTGCAGAAATTAAAAGCTAGATCTTTCTTTAAAATAATTGTTGGCACTGTTGTGCAATCTGTGCAAGATGATCAAAAGGAGCAAGATATCAGAAACATGGAAGCAGAAGTGCTAGCATTGGAAGAGCTTTCAAAGCAGCTATTCCTGGAAATATACGAGCTTCGTCAAGCAAAGGAGGCTGCTGCATATTCTCGAACCTGGAAGGGTCATATGCAGAACCTACTAGGTTATGCATGCTCTCTACTGTGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010228 GO:0010427 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0019840 GO:0019899 GO:0022414 GO:0031406 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033293 GO:0033554 GO:0033993 GO:0035639 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051020 GO:0051716 GO:0061458 GO:0070417 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098827 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

363

Amino Acids

42.03

Weight (kDa)

8.37

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GPHR_N	PF12537	150 - 207	1.3e-18	The Golgi pH Regulator (GPHR) Family N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64990 AT1G64990 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630
fragaria_vesca	FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230
malus_domestica	MD01G1239200.v1.1 MD07G1310900.v1.1
prunus_persica	Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1
pyrus_communis	pycom01g24650 pycom07g28320
rosa_chinensis	RchiOBHm_Chr1g0384591
rosa_laevigata	RLG00000026029
rosa_multiflora	Rmu_co8335957.1_g000001 Rmu_sc0006005.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276560
rosa_rugosa	Rorug01G0449600 Rorug01G0449700 Rorug01G0449800 Rorug01G0449900 Rorug01G0450000
rosa_samantha	Rh1AG474400 Rh1BG432400 Rh1CG445600 Rh1DG465100
rosa_wichuraiana	Rw1G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	333
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	3 cut(s)	52, 339, 352
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	4 cut(s)	85, 653, 749, 966
AjnI	CCWGG	2 cut(s)	978, 1031
AleI	CACNNNNGTG	1 cut(s)	884
AluBI	AGCT	8 cut(s)	178, 238, 497, 577, 851, 961, 973, 994
AluI	AGCT	8 cut(s)	178, 238, 497, 577, 851, 961, 973, 994
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	2 cut(s)	257, 587
Alw44I	GTGCAC	1 cut(s)	716
AlwI	GGATC	3 cut(s)	52, 339, 352
AoxI	GGCC	1 cut(s)	216
ApaI	GGGCCC	1 cut(s)	220
ApaLI	GTGCAC	1 cut(s)	716
ApeKI	GCWGC	6 cut(s)	55, 175, 335, 970, 1013, 1016
Asp700I	GAANNNNTTC	2 cut(s)	648, 666
AspLEI	GCGC	2 cut(s)	335, 387
AspS9I	GGNCC	3 cut(s)	216, 217, 656
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	424
AsuNHI	GCTAGC	1 cut(s)	946
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	2 cut(s)	220, 720
BamHI	GGATCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	220
BauI	CACGAG	1 cut(s)	713
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	6 cut(s)	42, 187, 322, 982, 1000, 1003
BccI	CCATC	3 cut(s)	57, 596, 634
BciT130I	CCWGG	2 cut(s)	980, 1033
BclI	TGATCA	1 cut(s)	904
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	257, 587
BfaI	CTAG	4 cut(s)	50, 852, 947, 1058
BfmI	CTRYAG	2 cut(s)	173, 511
BglII	AGATCT	1 cut(s)	854
BisI	GCNGC	6 cut(s)	56, 176, 336, 971, 1014, 1017
BlsI	GCNGC	6 cut(s)	57, 177, 337, 972, 1015, 1018
Bme1390I	CCNGG	3 cut(s)	220, 980, 1033
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	3 cut(s)	216, 217, 656
BmiI	GGNNCC	2 cut(s)	218, 346
BmrFI	CCNGG	3 cut(s)	220, 980, 1033
BmsI	GCATC	1 cut(s)	291
BmtI	GCTAGC	1 cut(s)	950
BpiI	GAAGAC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	485
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	236, 270
BseBI	CCWGG	2 cut(s)	980, 1033
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	2 cut(s)	68, 195
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMII	CTCAG	2 cut(s)	455, 543
BseNI	ACTGG	2 cut(s)	236, 270
BseSI	GKGCMC	2 cut(s)	220, 720
BseXI	GCAGC	6 cut(s)	42, 187, 322, 982, 1000, 1003
BseYI	CCCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	2 cut(s)	220, 486
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	2 cut(s)	257, 587
BsmI	GAATGC	3 cut(s)	393, 583, 648
BsnI	GGCC	1 cut(s)	218
Bsp120I	GGGCCC	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	220, 720
Bsp143I	GATC	7 cut(s)	44, 132, 192, 344, 555, 854, 904
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	454, 544
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	218, 346
BspMAI	CTGCAG	1 cut(s)	177
BspOI	GCTAGC	1 cut(s)	950
BspPI	GGATC	3 cut(s)	52, 339, 352
BspQI	GCTCTTC	1 cut(s)	951
BsrI	ACTGG	2 cut(s)	236, 270
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	7 cut(s)	44, 132, 192, 344, 555, 854, 904
BssSI	CACGAG	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	564
Bst2BI	CACGAG	1 cut(s)	713
Bst2UI	CCWGG	2 cut(s)	980, 1033
Bst4CI	ACNGT	4 cut(s)	261, 469, 883, 1080
Bst6I	CTCTTC	6 cut(s)	105, 110, 191, 657, 677, 951
BstAPI	GCANNNNNTGC	1 cut(s)	895
BstC8I	GCNNGC	2 cut(s)	948, 1069
BstDEI	CTNAG	5 cut(s)	124, 441, 552, 606, 799
BstF5I	GGATG	2 cut(s)	68, 195
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	335, 387
BstKTI	GATC	7 cut(s)	47, 135, 195, 347, 558, 857, 907
BstMAI	GTCTC	2 cut(s)	257, 587
BstMBI	GATC	7 cut(s)	44, 132, 192, 344, 555, 854, 904
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 895, 967, 1010
BstNI	CCWGG	2 cut(s)	980, 1033
BstNSI	RCATGY	1 cut(s)	1071
BstSCI	CCNGG	3 cut(s)	218, 978, 1031
BstSFI	CTRYAG	2 cut(s)	173, 511
BstSLI	GKGCMC	2 cut(s)	220, 720
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	6 cut(s)	42, 187, 322, 982, 1000, 1003
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	2 cut(s)	344, 854
BstYI	RGATCY	2 cut(s)	344, 854
BsuRI	GGCC	1 cut(s)	218
BtsCI	GGATG	2 cut(s)	68, 195
BtsIMutI	CAGTG	1 cut(s)	879
Cac8I	GCNNGC	2 cut(s)	948, 1069
CfoI	GCGC	2 cut(s)	335, 387
Cfr13I	GGNCC	3 cut(s)	216, 217, 656
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	7 cut(s)	274, 388, 436, 472, 580, 931, 1068
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	5 cut(s)	124, 441, 552, 606, 799
DpnI	GATC	7 cut(s)	46, 134, 194, 346, 557, 856, 906
DpnII	GATC	7 cut(s)	44, 132, 192, 344, 555, 854, 904
DraI	TTTAAA	1 cut(s)	865
Eam1104I	CTCTTC	6 cut(s)	105, 110, 191, 657, 677, 951
EarI	CTCTTC	6 cut(s)	105, 110, 191, 657, 677, 951
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	922
Eco47I	GGWCC	1 cut(s)	656
EcoO109I	RGGNCCY	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	978, 1031
EcoRV	GATATC	1 cut(s)	922
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	2 cut(s)	585, 1069
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	7 cut(s)	277, 391, 439, 475, 583, 934, 1071
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	7 cut(s)	273, 387, 435, 471, 579, 930, 1067
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	1044
FbaI	TGATCA	1 cut(s)	904
Fnu4HI	GCNGC	6 cut(s)	56, 176, 336, 971, 1014, 1017
FokI	GGATG	2 cut(s)	75, 182
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	6 cut(s)	56, 176, 336, 971, 1014, 1017
FspBI	CTAG	4 cut(s)	50, 852, 947, 1058
GlaI	GCGC	2 cut(s)	334, 386
GluI	GCNGC	6 cut(s)	56, 176, 336, 971, 1014, 1017
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	2 cut(s)	220, 486
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	335, 387
Hin1II	CATG	7 cut(s)	277, 391, 439, 475, 583, 934, 1071
Hin6I	GCGC	2 cut(s)	333, 385
HinP1I	GCGC	2 cut(s)	333, 385
HpaII	CCGG	2 cut(s)	220, 486
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	4 cut(s)	132, 324, 536, 926
Hpy188III	TCNNGA	5 cut(s)	82, 190, 298, 592, 1026
Hpy8I	GTNNAC	1 cut(s)	718
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	7 cut(s)	84, 166, 319, 358, 376, 420, 1030
HpyCH4III	ACNGT	4 cut(s)	261, 469, 883, 1080
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 895, 967, 1010
HpyF3I	CTNAG	5 cut(s)	124, 441, 552, 606, 799
Hsp92II	CATG	7 cut(s)	277, 391, 439, 475, 583, 934, 1071
HspAI	GCGC	2 cut(s)	333, 385
Ksp22I	TGATCA	1 cut(s)	904
Kzo9I	GATC	7 cut(s)	44, 132, 192, 344, 555, 854, 904
LguI	GCTCTTC	1 cut(s)	951
LmnI	GCTCC	2 cut(s)	494, 913
Lsp1109I	GCAGC	6 cut(s)	42, 187, 322, 982, 1000, 1003
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	4 cut(s)	50, 852, 947, 1058
MaeIII	GTNAC	4 cut(s)	261, 463, 515, 794
MalI	GATC	7 cut(s)	46, 134, 194, 346, 557, 856, 906
MboI	GATC	7 cut(s)	44, 132, 192, 344, 555, 854, 904
MflI	RGATCY	2 cut(s)	344, 854
MhlI	GDGCHC	2 cut(s)	220, 720
MluCI	AATT	5 cut(s)	502, 540, 787, 842, 870
MnlI	CCTC	7 cut(s)	19, 111, 194, 450, 538, 658, 1003
Mph1103I	ATGCAT	2 cut(s)	585, 1069
MroXI	GAANNNNTTC	2 cut(s)	648, 666
MseI	TTAA	4 cut(s)	707, 830, 845, 864
MslI	CAYNNNNRTG	1 cut(s)	884
MspI	CCGG	2 cut(s)	220, 486
MspR9I	CCNGG	3 cut(s)	220, 980, 1033
Mva1269I	GAATGC	3 cut(s)	393, 583, 648
MvaI	CCWGG	2 cut(s)	980, 1033
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	4 cut(s)	55, 895, 967, 1010
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	1044
NdeII	GATC	7 cut(s)	44, 132, 192, 344, 555, 854, 904
NheI	GCTAGC	1 cut(s)	946
NlaIII	CATG	7 cut(s)	277, 391, 439, 475, 583, 934, 1071
NlaIV	GGNNCC	2 cut(s)	218, 346
NsiI	ATGCAT	2 cut(s)	585, 1069
NspI	RCATGY	1 cut(s)	1071
OliI	CACNNNNGTG	1 cut(s)	884
PaeI	GCATGC	1 cut(s)	1071
PciSI	GCTCTTC	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	3 cut(s)	393, 583, 648
PdmI	GAANNNNTTC	2 cut(s)	648, 666
PfoI	TCCNGGA	1 cut(s)	978
PkrI	GCNGC	6 cut(s)	57, 177, 337, 972, 1015, 1018
Psp6I	CCWGG	2 cut(s)	978, 1031
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	2 cut(s)	978, 1031
PspN4I	GGNNCC	2 cut(s)	218, 346
PspOMI	GGGCCC	1 cut(s)	216
PspPI	GGNCC	3 cut(s)	216, 217, 656
PstI	CTGCAG	1 cut(s)	177
PsuI	RGATCY	2 cut(s)	344, 854
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	884
SapI	GCTCTTC	1 cut(s)	951
SaqAI	TTAA	4 cut(s)	707, 830, 845, 864
SatI	GCNGC	6 cut(s)	56, 176, 336, 971, 1014, 1017
Sau3AI	GATC	7 cut(s)	44, 132, 192, 344, 555, 854, 904
Sau96I	GGNCC	3 cut(s)	216, 217, 656
ScrFI	CCNGG	3 cut(s)	220, 980, 1033
SduI	GDGCHC	2 cut(s)	220, 720
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	2 cut(s)	173, 511
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	884
SphI	GCATGC	1 cut(s)	1071
Sse9I	AATT	5 cut(s)	502, 540, 787, 842, 870
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	4 cut(s)	50, 852, 947, 1058
StyD4I	CCNGG	3 cut(s)	218, 978, 1031
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	4 cut(s)	261, 469, 883, 1080
TaqI	TCGA	4 cut(s)	189, 240, 591, 1027
TasI	AATT	5 cut(s)	502, 540, 787, 842, 870
Tru1I	TTAA	4 cut(s)	707, 830, 845, 864
Tru9I	TTAA	4 cut(s)	707, 830, 845, 864
TscAI	CASTG	1 cut(s)	886
TseI	GCWGC	6 cut(s)	55, 175, 335, 970, 1013, 1016
TspDTI	ATGAA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	886
VneI	GTGCAC	1 cut(s)	716
VpaK11BI	GGWCC	1 cut(s)	656
XceI	RCATGY	1 cut(s)	1071
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmnI	GAANNNNTTC	2 cut(s)	648, 666
XspI	CTAG	4 cut(s)	50, 852, 947, 1058
Zsp2I	ATGCAT	2 cut(s)	585, 1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.