Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002109

Physical Location & Seq

Genomic Coordinates Reverse (-)

30228857 .. 30234856

Gene Structure 6000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G329100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGGTTGGGGTTGGGCAATCTACGAGGGAGTGGTGGCGTTGGGATCGCTGGGGCTGCTGGGATGGGCGGGGCTGTGGTTCTTGAACCGAAGGCTCTACAAAGAGTACGAAGAGAAGAGGGTCTTAGTTCAGATCATATTCAGCGTGGTCTTCGCCTTCTCTTGTAATCTGCTGCAGCTGGTCCTCTTCGAGATCATCCCCTTTCTCTCCCAAAGGGCACGATGGCTCAACTGGAAGCTCGATTTGTTTTGTCTCATACTATTACTGGTTTTCATGTTGCCTTATTATCATTGTTTCTTAATGCTCTGCAACAATGGGTTCCCGAAGGAACGCGCTGCTCTTGGATCCGTCTTGTTCTTGCTCGCCTTCCTTTATGCTTTCTGGCGCATGGGCATTCACTTCCCTATGCCTTCCCCCGATAAAGGCTTCTTCACCATGCCTCAATTGGTCAGTCGGATTGGGGTCATTGGCGTTACTGTCATGGCTGTCTTGTCTGGTTTTGGAGCTGTCAATTTGCCCTACAGTTACTTATCTCTCTTTATCAGAGAGATTGAGGAAGCAGAGATCAAGTCCTTGGAAAGACAGCTAATGCAATCCATCGAGACTTGTATTGCTAAGAAAAAGAAGATCATTCTTTCTCAAATGGAGATGGAACGGATTCATGGATCAGAAGAGAAATTAAAGGCTAGATCTTTCTTTAAAAGAATTGTTGGCACTGTTGTGCGATCTGTGCAAGAGGATCAAAAGGAGCAAGATATTAAAAACATGGAAGCAGAAGTGCAAGCATTAGAAGAGCTTTCAAAGCAGCTATTCCTGGAAATTTATGAGCTTCGTCAAGCAAAGGAAGCTGCTGCTTATTCTCGAACCTGGAAGGGTCATATGCAGAATCTACTTGGTTATGCATGTTCAATCTACTGTGTATATAAAATGATTAAGTCTTTGCAAAGTGTTGTTTTCAAAGAGGCTGGCTCTGTGGATCCTGTTACAATGACAATTAGCATATTCTTGCAGTTCTTTGACATTGGTATCAATGCAGCATTGTTGTCACAGTATATTTCACTCTTGTTCATTGGAATGTTGATTGTTATATCAGTTCGTGGATTCTTGACAAATTTAATGAAGTTCTTTTTTGCAGTATCAAGAGTTGGGAGTGGATCTTCTAGCAATGTTGTACTGTTTCTCTCTGAAATTATGGGAATGTACTTCCTGTCCTCTATTCTTTTGATAAGAAAAAGCTTGGCAACTGAGTACAGGATGATCATAACAGATGTATTGGGTGGAGATATTCAGTTTGACTTCTATCACCGGTGGTTTGATGCAATCTTTGTGGCCAGTGCTTTTCTTTCTCTGCTTTTGCTTTCTGCACATTATACCTCTCGGCAGGCTGACAAACACCCGATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010228 GO:0010427 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0019840 GO:0019899 GO:0022414 GO:0031406 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033293 GO:0033554 GO:0033993 GO:0035639 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051020 GO:0051716 GO:0061458 GO:0070417 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098827 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

469

Amino Acids

53.66

Weight (kDa)

8.78

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64990 AT1G64990 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630 AT4G27630
fragaria_vesca	FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230 FvH4_7g34230
malus_domestica	MD01G1239200.v1.1 MD07G1310900.v1.1
prunus_persica	Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1 Prupe.2G329100_v2.0.a1
pyrus_communis	pycom01g24650 pycom07g28320
rosa_chinensis	RchiOBHm_Chr1g0384591
rosa_laevigata	RLG00000026029
rosa_multiflora	Rmu_co8335957.1_g000001 Rmu_sc0006005.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276560
rosa_rugosa	Rorug01G0449600 Rorug01G0449700 Rorug01G0449800 Rorug01G0449900 Rorug01G0450000
rosa_samantha	Rh1AG474400 Rh1BG432400 Rh1CG445600 Rh1DG465100
rosa_wichuraiana	Rw1G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	333
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	8 cut(s)	52, 339, 352, 673, 747, 971, 984, 1162
AcoI	YGGCCR	1 cut(s)	1329
AcsI	RAATTY	2 cut(s)	819, 1111
AfaI	GTAC	4 cut(s)	107, 1173, 1202, 1250
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgeI	ACCGGT	1 cut(s)	1305
AgsI	TTSAA	4 cut(s)	85, 801, 909, 958
AjnI	CCWGG	2 cut(s)	813, 866
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	9 cut(s)	178, 238, 506, 586, 796, 808, 829, 848, 1236
AluI	AGCT	9 cut(s)	178, 238, 506, 586, 796, 808, 829, 848, 1236
Alw26I	GTCTC	2 cut(s)	257, 596
AlwI	GGATC	8 cut(s)	52, 339, 352, 673, 747, 971, 984, 1162
AoxI	GGCC	1 cut(s)	1329
ApeKI	GCWGC	8 cut(s)	55, 172, 175, 335, 805, 848, 851, 1034
ApoI	RAATTY	2 cut(s)	819, 1111
AsiGI	ACCGGT	1 cut(s)	1305
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	2 cut(s)	335, 387
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	424, 1295
AvaII	GGWCC	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	220
BaeI	ACNNNNGTAYC	2 cut(s)	1009, 1042
BalI	TGGCCA	1 cut(s)	1331
BamHI	GGATCC	2 cut(s)	344, 976
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	8 cut(s)	42, 159, 187, 322, 817, 835, 838, 1046
BccI	CCATC	4 cut(s)	57, 216, 605, 643
BciT130I	CCWGG	2 cut(s)	815, 868
BclI	TGATCA	1 cut(s)	1257
BcoDI	GTCTC	2 cut(s)	257, 596
BfaI	CTAG	2 cut(s)	687, 1161
BfmI	CTRYAG	2 cut(s)	173, 520
BglII	AGATCT	1 cut(s)	689
BisI	GCNGC	8 cut(s)	56, 173, 176, 336, 806, 849, 852, 1035
BlsI	GCNGC	8 cut(s)	57, 174, 177, 337, 807, 850, 853, 1036
Bme1390I	CCNGG	2 cut(s)	815, 868
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	3 cut(s)	320, 346, 978
BmrFI	CCNGG	2 cut(s)	815, 868
BmsI	GCATC	1 cut(s)	1306
BpiI	GAAGAC	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	953, 985
BsaJI	CCNNGG	1 cut(s)	573
BsaWI	WCCGGW	1 cut(s)	1305
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse118I	RCCGGY	1 cut(s)	1305
Bse1I	ACTGG	3 cut(s)	236, 270, 1332
Bse3DI	GCAATG	1 cut(s)	1171
BseBI	CCWGG	2 cut(s)	815, 868
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	3 cut(s)	68, 195, 1260
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	1171
BseMII	CTCAG	1 cut(s)	1236
BseNI	ACTGG	3 cut(s)	236, 270, 1332
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	8 cut(s)	42, 159, 187, 322, 817, 835, 838, 1046
BseYI	CCCAGC	2 cut(s)	49, 58
BsgI	GTGCAG	1 cut(s)	1347
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	1331
BshTI	ACCGGT	1 cut(s)	1305
BsiSI	CCGG	1 cut(s)	1306
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	2 cut(s)	257, 596
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	1331
Bsp1286I	GDGCHC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	1331
BspCNI	CTCAG	1 cut(s)	1237
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	3 cut(s)	320, 346, 978
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	8 cut(s)	52, 339, 352, 673, 747, 971, 984, 1162
BspQI	GCTCTTC	1 cut(s)	786
BsrDI	GCAATG	1 cut(s)	1171
BsrFI	RCCGGY	1 cut(s)	1305
BsrI	ACTGG	3 cut(s)	236, 270, 1332
BssAI	RCCGGY	1 cut(s)	1305
BssECI	CCNNGG	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	2 cut(s)	815, 868
Bst4CI	ACNGT	6 cut(s)	478, 524, 718, 917, 1050, 1176
Bst6I	CTCTTC	5 cut(s)	105, 110, 191, 666, 786
BstC8I	GCNNGC	4 cut(s)	363, 783, 967, 1383
BstDEI	CTNAG	3 cut(s)	124, 615, 1245
BstF5I	GGATG	3 cut(s)	68, 195, 1260
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	335, 387
BstMAI	GTCTC	2 cut(s)	257, 596
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 730, 802, 845
BstNI	CCWGG	2 cut(s)	815, 868
BstNSI	RCATGY	1 cut(s)	906
BstSCI	CCNGG	2 cut(s)	813, 866
BstSFI	CTRYAG	2 cut(s)	173, 520
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	8 cut(s)	42, 159, 187, 322, 817, 835, 838, 1046
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	4 cut(s)	344, 689, 976, 1154
BstYI	RGATCY	4 cut(s)	344, 689, 976, 1154
BsuRI	GGCC	1 cut(s)	1331
BtsCI	GGATG	3 cut(s)	68, 195, 1260
BtsIMutI	CAGTG	2 cut(s)	714, 1339
Cac8I	GCNNGC	4 cut(s)	363, 783, 967, 1383
CfoI	GCGC	2 cut(s)	335, 387
Cfr10I	RCCGGY	1 cut(s)	1305
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	4 cut(s)	106, 1172, 1201, 1249
CspAI	ACCGGT	1 cut(s)	1305
CspCI	CAANNNNNGTGG	2 cut(s)	1308, 1343
CviAII	CATG	7 cut(s)	274, 388, 436, 481, 662, 766, 903
CviQI	GTAC	4 cut(s)	106, 1172, 1201, 1249
DdeI	CTNAG	3 cut(s)	124, 615, 1245
DraI	TTTAAA	1 cut(s)	700
EaeI	YGGCCR	1 cut(s)	1329
Eam1104I	CTCTTC	5 cut(s)	105, 110, 191, 666, 786
EarI	CTCTTC	5 cut(s)	105, 110, 191, 666, 786
Eco130I	CCWWGG	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	813, 866
EcoT14I	CCWWGG	1 cut(s)	573
EcoT22I	ATGCAT	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	7 cut(s)	277, 391, 439, 484, 665, 769, 906
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	7 cut(s)	273, 387, 435, 480, 661, 765, 902
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	879
FbaI	TGATCA	1 cut(s)	1257
Fnu4HI	GCNGC	8 cut(s)	56, 173, 176, 336, 806, 849, 852, 1035
FokI	GGATG	3 cut(s)	75, 182, 1267
Fsp4HI	GCNGC	8 cut(s)	56, 173, 176, 336, 806, 849, 852, 1035
FspBI	CTAG	2 cut(s)	687, 1161
GlaI	GCGC	2 cut(s)	334, 386
GluI	GCNGC	8 cut(s)	56, 173, 176, 336, 806, 849, 852, 1035
GsaI	CCCAGC	2 cut(s)	53, 62
HaeIII	GGCC	1 cut(s)	1331
HapII	CCGG	1 cut(s)	1306
HhaI	GCGC	2 cut(s)	335, 387
Hin1II	CATG	7 cut(s)	277, 391, 439, 484, 665, 769, 906
Hin6I	GCGC	2 cut(s)	333, 385
HinP1I	GCGC	2 cut(s)	333, 385
HindIII	AAGCTT	1 cut(s)	1234
HinfI	GANTC	3 cut(s)	658, 886, 1101
HpaII	CCGG	1 cut(s)	1306
HphI	GGTGA	2 cut(s)	424, 1295
Hpy188I	TCNGA	5 cut(s)	132, 456, 545, 670, 1186
Hpy188III	TCNNGA	7 cut(s)	82, 190, 322, 601, 861, 1105, 1140
HpyAV	CCTTC	6 cut(s)	84, 166, 319, 376, 420, 865
HpyCH4III	ACNGT	6 cut(s)	478, 524, 718, 917, 1050, 1176
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 730, 802, 845
HpyF3I	CTNAG	3 cut(s)	124, 615, 1245
Hsp92II	CATG	7 cut(s)	277, 391, 439, 484, 665, 769, 906
HspAI	GCGC	2 cut(s)	333, 385
Ksp22I	TGATCA	1 cut(s)	1257
LguI	GCTCTTC	1 cut(s)	786
LmnI	GCTCC	2 cut(s)	503, 748
Lsp1109I	GCAGC	8 cut(s)	42, 159, 187, 322, 817, 835, 838, 1046
LweI	GCATC	1 cut(s)	1306
MaeI	CTAG	2 cut(s)	687, 1161
MaeIII	GTNAC	4 cut(s)	472, 524, 982, 1044
MboII	GAAGA	9 cut(s)	122, 127, 142, 178, 421, 637, 683, 803, 1149
MfeI	CAATTG	1 cut(s)	443
MflI	RGATCY	4 cut(s)	344, 689, 976, 1154
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	1331
MluCI	AATT	8 cut(s)	443, 511, 677, 705, 819, 993, 1111, 1188
MluNI	TGGCCA	1 cut(s)	1331
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	9 cut(s)	19, 111, 194, 450, 547, 730, 955, 1222, 1384
Mox20I	TGGCCA	1 cut(s)	1331
Mph1103I	ATGCAT	1 cut(s)	904
MroXI	GAANNNNTTC	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	1331
MseI	TTAA	7 cut(s)	299, 680, 699, 759, 933, 1115, 1405
MslI	CAYNNNNRTG	2 cut(s)	719, 1073
Msp20I	TGGCCA	1 cut(s)	1331
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	1 cut(s)	1306
MspR9I	CCNGG	2 cut(s)	815, 868
MunI	CAATTG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	2 cut(s)	815, 868
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	4 cut(s)	55, 730, 802, 845
NdeI	CATATG	1 cut(s)	879
NlaIII	CATG	7 cut(s)	277, 391, 439, 484, 665, 769, 906
NlaIV	GGNNCC	3 cut(s)	320, 346, 978
NmeAIII	GCCGAG	1 cut(s)	1357
NmuCI	GTSAC	1 cut(s)	1044
NsiI	ATGCAT	1 cut(s)	904
NspI	RCATGY	1 cut(s)	906
OliI	CACNNNNGTG	1 cut(s)	719
PciSI	GCTCTTC	1 cut(s)	786
PctI	GAATGC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	658, 886, 1101
PfoI	TCCNGGA	1 cut(s)	813
PinAI	ACCGGT	1 cut(s)	1305
PkrI	GCNGC	8 cut(s)	57, 174, 177, 337, 807, 850, 853, 1036
Psp6I	CCWGG	2 cut(s)	813, 866
PspFI	CCCAGC	2 cut(s)	49, 58
PspGI	CCWGG	2 cut(s)	813, 866
PspN4I	GGNNCC	3 cut(s)	320, 346, 978
PspPI	GGNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	177
PsuI	RGATCY	4 cut(s)	344, 689, 976, 1154
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	4 cut(s)	107, 1173, 1202, 1250
RsaNI	GTAC	4 cut(s)	106, 1172, 1201, 1249
RseI	CAYNNNNRTG	2 cut(s)	719, 1073
SapI	GCTCTTC	1 cut(s)	786
SaqAI	TTAA	7 cut(s)	299, 680, 699, 759, 933, 1115, 1405
SatI	GCNGC	8 cut(s)	56, 173, 176, 336, 806, 849, 852, 1035
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	815, 868
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	1306
SfcI	CTRYAG	2 cut(s)	173, 520
SgrAI	CRCCGGYG	1 cut(s)	1305
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	2 cut(s)	719, 1073
Sse9I	AATT	8 cut(s)	443, 511, 677, 705, 819, 993, 1111, 1188
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	687, 1161
StyD4I	CCNGG	2 cut(s)	813, 866
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	6 cut(s)	478, 524, 718, 917, 1050, 1176
TaqI	TCGA	4 cut(s)	189, 240, 600, 862
TasI	AATT	8 cut(s)	443, 511, 677, 705, 819, 993, 1111, 1188
TatI	WGTACW	3 cut(s)	1171, 1200, 1248
TfiI	GAWTC	3 cut(s)	658, 886, 1101
Tru1I	TTAA	7 cut(s)	299, 680, 699, 759, 933, 1115, 1405
Tru9I	TTAA	7 cut(s)	299, 680, 699, 759, 933, 1115, 1405
TscAI	CASTG	2 cut(s)	721, 1339
TseFI	GTSAC	1 cut(s)	1044
TseI	GCWGC	8 cut(s)	55, 172, 175, 335, 805, 848, 851, 1034
Tsp45I	GTSAC	1 cut(s)	1044
TspDTI	ATGAA	4 cut(s)	262, 650, 1057, 1133
TspGWI	ACGGA	2 cut(s)	337, 670
TspRI	CASTG	2 cut(s)	721, 1339
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	2 cut(s)	819, 1111
XceI	RCATGY	1 cut(s)	906
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	2 cut(s)	687, 1161
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.