AT1G65090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007080
Physical Location & Seq
Reverse (-)
24180830 .. 24183300
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65090.2

Sequence Viewer

Length: 741 bp
ATGAGTCAAACAATGGAGGAATATCAGTCTAATGAGAGTGAAGATAAAAGAAGTTGGATTTGGAGTAAGGCGGTAAGTGTTGGGAAGAAAGTTCTGACAGCTGGTGTTGTAGTGTCTTCAGCTCCACTTCTTGTTCCTTCACTTTTTGTCGCCTCGACACTTGCCTTCCTCTCCTCGGTTCCGTTTTGTCTCTTCTTGGCTAATTATGCTTGTACACAAAAGGTCATGAGTACTCTGCTTCCTGATACTGAAGAAACTGGTGGAGTTGGCAAGGAGGATGATGACGAATCTGGATTTGATGAGTATAGCAAGATTGGTCACGGTGAAGGCGCGGCTGGAGTTGGTGAGGCTGCACTTTTCAGGGGTAAAGAAGAACCCATTCCCATTCAGGTTAAGGAAGATGAGGAGATGGCGAAAGAGTCAACGAGCTTGCTAGAGAAAATTAGGGATGAGGGTAGAACTGACAAAGAAACCTCTGAGAGAACTTTACAAGATGATAAAAAGTCCGGAAATGCTAAGTCAGAGGAGGTTCAAGAACAGCCTGAAAAGCGGGAAGCGCCTGAGACTAGACGTGAAGGGGAAACTGGGGCTACAAAAATTGAAACTTCTACGGGCAAGGACGATGAGGAAATATCTTCTAATGAGCCAATAGACCAAGCTAGTGGGGCACAAGGAACCGGGGAAGAGAAACGAAAAAACACAACTAAGAAAAAGAAGAAAACCGGGCGTGCAGGTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

26.75

Weight (kDa)

4.8

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 722
Acc36I ACCTGC 1 cut(s) 722
AccII CGCG 1 cut(s) 332
AccIII TCCGGA 1 cut(s) 506
AciI CCGC 3 cut(s) 71, 332, 550
AcuI CTGAAG 2 cut(s) 102, 270
AfaI GTAC 2 cut(s) 214, 232
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 2 cut(s) 533, 602
AjiI CACGTC 1 cut(s) 572
AjuI GAANNNNNNNTTGG 2 cut(s) 43, 75
AluBI AGCT 4 cut(s) 101, 122, 429, 659
AluI AGCT 4 cut(s) 101, 122, 429, 659
Alw26I GTCTC 2 cut(s) 194, 557
Aor13HI TCCGGA 1 cut(s) 506
ApeKI GCWGC 1 cut(s) 350
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 2 cut(s) 332, 559
AsuC2I CCSGG 2 cut(s) 679, 724
AsuHPI GGTGA 2 cut(s) 335, 356
BaeGI GKGCMC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 403
BcnI CCSGG 2 cut(s) 679, 724
BcoDI GTCTC 2 cut(s) 194, 557
BfaI CTAG 3 cut(s) 434, 567, 660
BfoI RGCGCY 1 cut(s) 560
BfuAI ACCTGC 1 cut(s) 722
BisI GCNGC 2 cut(s) 333, 351
BlsI GCNGC 2 cut(s) 334, 352
BmcAI AGTACT 1 cut(s) 232
Bme1390I CCNGG 2 cut(s) 679, 724
BmgBI CACGTC 1 cut(s) 572
BmiI GGNNCC 2 cut(s) 180, 676
BmrFI CCNGG 2 cut(s) 679, 724
BmrI ACTGGG 1 cut(s) 594
BmuI ACTGGG 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 357
BpuMI CCSGG 2 cut(s) 679, 724
BsaJI CCNNGG 2 cut(s) 174, 678
BsaWI WCCGGW 1 cut(s) 506
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 262, 589
BseAI TCCGGA 1 cut(s) 506
BseDI CCNNGG 2 cut(s) 174, 678
BseGI GGATG 2 cut(s) 283, 454
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 2 cut(s) 468, 552
BseNI ACTGG 2 cut(s) 262, 589
BseRI GAGGAG 3 cut(s) 163, 419, 539
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 332
BsiSI CCGG 3 cut(s) 507, 678, 723
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 2 cut(s) 194, 557
Bsp1286I GDGCHC 1 cut(s) 670
Bsp13I TCCGGA 1 cut(s) 506
Bsp1407I TGTACA 1 cut(s) 212
BspACI CCGC 3 cut(s) 71, 332, 550
BspCNI CTCAG 2 cut(s) 469, 553
BspEI TCCGGA 1 cut(s) 506
BspFNI CGCG 1 cut(s) 332
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 180, 676
BspMI ACCTGC 1 cut(s) 722
BsrGI TGTACA 1 cut(s) 212
BsrI ACTGG 2 cut(s) 262, 589
BssECI CCNNGG 2 cut(s) 174, 678
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 2 cut(s) 197, 678
BstAUI TGTACA 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 431, 729
BstDEI CTNAG 4 cut(s) 477, 516, 561, 705
BstF5I GGATG 2 cut(s) 283, 454
BstFNI CGCG 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 560
BstHHI GCGC 2 cut(s) 332, 559
BstMAI GTCTC 2 cut(s) 194, 557
BstMWI GCNNNNNNNGC 4 cut(s) 206, 547, 556, 665
BstSCI CCNGG 2 cut(s) 677, 722
BstSLI GKGCMC 1 cut(s) 670
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 662
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 2 cut(s) 283, 454
BveI ACCTGC 1 cut(s) 722
Cac8I GCNNGC 2 cut(s) 431, 729
CciI TCATGA 1 cut(s) 225
CfoI GCGC 2 cut(s) 332, 559
Csp6I GTAC 2 cut(s) 213, 231
CviAII CATG 1 cut(s) 226
CviQI GTAC 2 cut(s) 213, 231
DdeI CTNAG 4 cut(s) 477, 516, 561, 705
Eam1104I CTCTTC 2 cut(s) 197, 678
EarI CTCTTC 2 cut(s) 197, 678
Eco57I CTGAAG 2 cut(s) 102, 270
FaeI CATG 1 cut(s) 229
FaiI YATR 4 cut(s) 207, 227, 306, 739
FatI CATG 1 cut(s) 225
FauI CCCGC 1 cut(s) 543
Fnu4HI GCNGC 2 cut(s) 333, 351
FokI GGATG 2 cut(s) 290, 461
Fsp4HI GCNGC 2 cut(s) 333, 351
FspBI CTAG 3 cut(s) 434, 567, 660
GlaI GCGC 2 cut(s) 331, 558
GluI GCNGC 2 cut(s) 333, 351
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 560
HapII CCGG 3 cut(s) 507, 678, 723
HhaI GCGC 2 cut(s) 332, 559
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 2 cut(s) 330, 557
HinP1I GCGC 2 cut(s) 330, 557
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 3 cut(s) 4, 287, 419
HpaII CCGG 3 cut(s) 507, 678, 723
HphI GGTGA 2 cut(s) 335, 356
Hpy166II GTNNAC 2 cut(s) 215, 423
Hpy188I TCNGA 3 cut(s) 96, 478, 523
Hpy188III TCNNGA 5 cut(s) 226, 242, 291, 507, 533
Hpy8I GTNNAC 2 cut(s) 215, 423
HpyAV CCTTC 4 cut(s) 147, 175, 320, 569
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 2 cut(s) 353, 731
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 547, 556, 665
HpyF3I CTNAG 4 cut(s) 477, 516, 561, 705
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 2 cut(s) 330, 557
Kpn2I TCCGGA 1 cut(s) 506
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 1 cut(s) 337
MaeI CTAG 3 cut(s) 434, 567, 660
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 3 cut(s) 202, 441, 597
MlyI GAGTC 2 cut(s) 13, 428
MmeI TCCRAC 1 cut(s) 35
MroI TCCGGA 1 cut(s) 506
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 3 cut(s) 507, 678, 723
MspR9I CCNGG 2 cut(s) 679, 724
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 4 cut(s) 206, 547, 556, 665
NciI CCSGG 2 cut(s) 679, 724
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 2 cut(s) 180, 676
NmuCI GTSAC 1 cut(s) 317
PagI TCATGA 1 cut(s) 225
PaqCI CACCTGC 1 cut(s) 722
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 334, 352
PleI GAGTC 2 cut(s) 12, 427
PpsI GAGTC 2 cut(s) 12, 427
PspN4I GGNNCC 2 cut(s) 180, 676
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 214, 232
RsaNI GTAC 2 cut(s) 213, 231
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 333, 351
ScaI AGTACT 1 cut(s) 232
SchI GAGTC 2 cut(s) 13, 428
ScrFI CCNGG 2 cut(s) 679, 724
SduI GDGCHC 1 cut(s) 670
Sse9I AATT 3 cut(s) 202, 441, 597
SsiI CCGC 3 cut(s) 71, 332, 550
SspMI CTAG 3 cut(s) 434, 567, 660
StyD4I CCNGG 2 cut(s) 677, 722
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 1 cut(s) 574
TaqI TCGA 1 cut(s) 155
TasI AATT 3 cut(s) 202, 441, 597
TatI WGTACW 2 cut(s) 212, 230
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 3 cut(s) 434, 567, 660
ZrmI AGTACT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.