MD12G1258000.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
32500080 .. 32502835
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1258000.v1.1.491

Sequence Viewer

Length: 1788 bp
ATGGAAGATCCAAGTGGGGAGTCCGAGCTGGAAGAAGACTTTCCAGAAGCAAACTGTGGTAAGATGAGGTGGATCTTGAACAAAGGATGGGGACTTGGGAAGAAAGTTCTGGTGACTGGTTTGGTAATTTCTTCTGCCCCAATTGTTCTTCCGCCGCTTGTGGTTATTTCCGCAATTGGGCTTGCCCTTTCTGTTCCATCCGGCATTATCTTGGCAAGTTATGCTTGCAGTGAGAAGATCATGAGCAAGTTACTTCCATATAGTGAGCCGCCTCCTTTGTTGGAAAATAATGTAACGTTAATGTCGAATAACGAAGAATTGCAGCATGACGAGGAATGGGAACGGGGTATGTGGGTAGGAGCGAAGACTGATATCGAAAAGGAAGAAGGATGGGATTGGACGGATCGACTCGAAGGCCGTGAGATGAGAGTTGAATTTGTTGATGAGGAAACTGGTGACATTATTGAGGAGGCTGCGCAAGGAAATGTAACTGAAGATGTGGGTGAAATTGAATTTGTAGAAGAAAATGGATATGAGAGGGACGTAGATGAGTCTACGGATGAGGAGGAAAAGCTAATATTGGATAGTATTTATGAGGTGAAAATTAAAGGATTGAGTGAGGATTTTAAGGATGATTCCGTACTAGATGAGAATCAAGTCGATGAGGTGTGTGGATTAGTGTTCAATGTAATTGAGGGTGATGTGCAAATGGGAGTGATACCCACTGAAGGGACTACCGTAGCAATCAAAGAAAGCGAGGGTCAAGAAAGAGTAAATGATATAGTAGAAGAGGCGGAGTTGGTGGAAGAGACGAGGGGCTTGCTAGAAAAAATTAGGGATGAAGGCAACACTGATAATGCAATGGAGATGGACAAGCGGTATGTGGGAGAAAGTGAAGGAGGTGGGGAGCTAATCAATCAAAAAGTTGGTTCAAATGCTGAAGAGATTGAGATACCAGTTGAAGCTAGAATTGCTGACATTGGATCGCAAGAATCAACTAATACCAGGGAAGGTGGAGTTGGGGACGTTCCAGAGACCGTTTATGAGGATGTCAAACCGGTTAGAGATATTGGGAGTGTTTCGGAAAGCAAGAATGCAGAGAATGATTTAGCAGCCGAGAAGCCAATAGGGGAAACCAAGAATAATGTTAAAGACGTTTTAGTGGAAGAAAAATCAAGGGCAAAAACAAGGAATTTGAAGCCTTTGGCGAGCAGCTTCACGGAAGACAAGCAAAAGTTTGTGATAAACAAAGAGGAAATGGTACAAGGAAGGAGAACCGATGATACAATCAATGAATTAGAGTTTCAGTTGATTAGAGAGAAGGAAATTGTGGTTTCAAATGCAGATGCAAGAGAGATTGCTGATGAAAGCGGGCTTCATTTGTTTGATGAGAAGAATCAATCTGGTCAGCAAGACTGGCATTCTTCTTATGGAATTTCTCAAGGTCATGTGGGTGATGAAGGTGCAGATTATGCAGAGCTTCCCATTTCAAGCATTGCACGTGAATCTACAGATTCTGGAATATCATCCGGAAAGGACATTACAATGCCTTCAAATGGGGTACTGTATGATGAGACGAAAATATGGGCGAAGATCGACGCTATACGAAGTATAGTCGGATACAAAGGCACACCCCACGCAACATGCATAGAGGAACTGAAGGCTCTTTACCTCTTCACAGGTGTGGAACCCCCTACAGTATCATTTAGTGACCCTCCTGATCTCGCACAGGTTAATCACAATCTTCGCTTTCTCATGTCCATAATCGGAGTTAAATTGGACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

596

Amino Acids

65.75

Weight (kDa)

4.29

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 477
AccI GTMKAC 1 cut(s) 554
AccIII TCCGGA 1 cut(s) 1529
AciI CCGC 7 cut(s) 152, 155, 171, 269, 794, 877, 1371
AclI AACGTT 1 cut(s) 296
AclWI GGATC 4 cut(s) 2, 80, 411, 991
AcsI RAATTY 4 cut(s) 434, 512, 1192, 1434
AcuI CTGAAG 4 cut(s) 513, 747, 960, 1679
AcvI CACGTG 1 cut(s) 1502
AfaI GTAC 3 cut(s) 642, 1263, 1563
AfiI CCNNNNNNNGG 4 cut(s) 177, 728, 729, 1556
AgeI ACCGGT 1 cut(s) 1057
AjnI CCWGG 1 cut(s) 1004
AjuI GAANNNNNNNTTGG 2 cut(s) 1002, 1034
AleI CACNNNNGTG 1 cut(s) 1682
AluBI AGCT 6 cut(s) 28, 574, 910, 965, 1215, 1480
AluI AGCT 6 cut(s) 28, 574, 910, 965, 1215, 1480
Alw26I GTCTC 3 cut(s) 803, 1028, 1568
AlwI GGATC 4 cut(s) 2, 80, 411, 991
AlwNI CAGNNNCTG 1 cut(s) 1517
Aor13HI TCCGGA 1 cut(s) 1529
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 4 cut(s) 322, 473, 1112, 1212
ApoI RAATTY 4 cut(s) 434, 512, 1192, 1434
AsiGI ACCGGT 1 cut(s) 1057
Asp700I GAANNNNTTC 1 cut(s) 39
AspLEI GCGC 1 cut(s) 478
AsuHPI GGTGA 6 cut(s) 124, 467, 515, 610, 710, 1466
BarI GAAGNNNNNNTAC 2 cut(s) 1652, 1684
BauI CACGAG 1 cut(s) 1783
BbrPI CACGTG 1 cut(s) 1502
BbsI GAAGAC 3 cut(s) 42, 371, 1230
BbvI GCAGC 4 cut(s) 334, 460, 1124, 1224
BccI CCATC 4 cut(s) 81, 205, 384, 862
BceAI ACGGC 1 cut(s) 402
BcgI CGANNNNNNTGC 2 cut(s) 802, 836
BciT130I CCWGG 1 cut(s) 1006
BciVI GTATCC 1 cut(s) 1613
BcoDI GTCTC 3 cut(s) 803, 1028, 1568
BfaI CTAG 3 cut(s) 644, 824, 966
BfmI CTRYAG 2 cut(s) 1509, 1695
BfuI GTATCC 1 cut(s) 1613
BisI GCNGC 6 cut(s) 155, 269, 323, 474, 1113, 1213
BlsI GCNGC 6 cut(s) 156, 270, 324, 475, 1114, 1214
Bme1390I CCNGG 1 cut(s) 1006
BmiI GGNNCC 1 cut(s) 1689
BmrFI CCNGG 1 cut(s) 1006
BmsI GCATC 1 cut(s) 1336
BpiI GAAGAC 3 cut(s) 42, 371, 1230
BpuEI CTTGAG 1 cut(s) 1425
BsaAI YACGTR 1 cut(s) 1502
BsaBI GATNNNNATC 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 1028
BsaJI CCNNGG 1 cut(s) 1005
BsaWI WCCGGW 2 cut(s) 1057, 1529
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 728, 729, 1556
Bse118I RCCGGY 1 cut(s) 1057
Bse1I ACTGG 4 cut(s) 121, 457, 956, 1421
Bse3DI GCAATG 2 cut(s) 867, 1494
Bse8I GATNNNNATC 1 cut(s) 651
BseAI TCCGGA 1 cut(s) 1529
BseBI CCWGG 1 cut(s) 1006
BseDI CCNNGG 1 cut(s) 1005
BseGI GGATG 8 cut(s) 92, 197, 395, 565, 637, 844, 1054, 1526
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 4 cut(s) 177, 728, 729, 1556
BseMI GCAATG 2 cut(s) 867, 1494
BseNI ACTGG 4 cut(s) 121, 457, 956, 1421
BseRI GAGGAG 2 cut(s) 482, 578
BseXI GCAGC 4 cut(s) 334, 460, 1124, 1224
BsgI GTGCAG 1 cut(s) 1485
BshFI GGCC 1 cut(s) 417
BshTI ACCGGT 1 cut(s) 1057
BsiSI CCGG 3 cut(s) 201, 1058, 1530
BslFI GGGAC 4 cut(s) 105, 554, 745, 1037
BslI CCNNNNNNNGG 4 cut(s) 177, 728, 729, 1556
BsmAI GTCTC 3 cut(s) 803, 1028, 1568
BsmBI CGTCTC 2 cut(s) 803, 1568
BsmFI GGGAC 4 cut(s) 105, 554, 745, 1037
BsmI GAATGC 2 cut(s) 1099, 1420
BsnI GGCC 1 cut(s) 417
Bso31I GGTCTC 1 cut(s) 1028
Bsp13I TCCGGA 1 cut(s) 1529
Bsp143I GATC 7 cut(s) 7, 72, 237, 403, 983, 1593, 1720
BspACI CCGC 7 cut(s) 152, 155, 171, 269, 794, 877, 1371
BspANI GGCC 1 cut(s) 417
BspEI TCCGGA 1 cut(s) 1529
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 1689
BspPI GGATC 4 cut(s) 2, 80, 411, 991
BspTNI GGTCTC 1 cut(s) 1028
BsrDI GCAATG 2 cut(s) 867, 1494
BsrFI RCCGGY 1 cut(s) 1057
BsrI ACTGG 4 cut(s) 121, 457, 956, 1421
BssAI RCCGGY 1 cut(s) 1057
BssECI CCNNGG 1 cut(s) 1005
BssMI GATC 7 cut(s) 7, 72, 237, 403, 983, 1593, 1720
BssSI CACGAG 1 cut(s) 1783
Bst2BI CACGAG 1 cut(s) 1783
Bst2UI CCWGG 1 cut(s) 1006
Bst4CI ACNGT 5 cut(s) 56, 739, 1039, 1566, 1699
Bst6I CTCTTC 4 cut(s) 783, 801, 936, 1679
BstAPI GCANNNNNTGC 2 cut(s) 221, 1472
BstBAI YACGTR 1 cut(s) 1502
BstC8I GCNNGC 5 cut(s) 183, 226, 821, 1210, 1373
BstF5I GGATG 8 cut(s) 92, 197, 395, 565, 637, 844, 1054, 1526
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 7 cut(s) 10, 75, 240, 406, 986, 1596, 1723
BstMAI GTCTC 3 cut(s) 803, 1028, 1568
BstMBI GATC 7 cut(s) 7, 72, 237, 403, 983, 1593, 1720
BstMWI GCNNNNNNNGC 4 cut(s) 221, 971, 1417, 1472
BstNI CCWGG 1 cut(s) 1006
BstNSI RCATGY 1 cut(s) 1647
BstSCI CCNGG 1 cut(s) 1004
BstSFI CTRYAG 2 cut(s) 1509, 1695
BstV1I GCAGC 4 cut(s) 334, 460, 1124, 1224
BstV2I GAAGAC 3 cut(s) 42, 371, 1230
BstX2I RGATCY 2 cut(s) 7, 72
BstYI RGATCY 2 cut(s) 7, 72
BsuI GTATCC 1 cut(s) 1613
BsuRI GGCC 1 cut(s) 417
BtsCI GGATG 8 cut(s) 92, 197, 395, 565, 637, 844, 1054, 1526
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 3 cut(s) 235, 723, 849
Cac8I GCNNGC 5 cut(s) 183, 226, 821, 1210, 1373
CaiI CAGNNNCTG 1 cut(s) 1517
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 478
Cfr10I RCCGGY 1 cut(s) 1057
CseI GACGC 1 cut(s) 1607
Csp6I GTAC 3 cut(s) 641, 1262, 1562
CspAI ACCGGT 1 cut(s) 1057
CviAII CATG 5 cut(s) 241, 326, 1448, 1644, 1756
CviQI GTAC 3 cut(s) 641, 1262, 1562
DpnI GATC 7 cut(s) 9, 74, 239, 405, 985, 1595, 1722
DpnII GATC 7 cut(s) 7, 72, 237, 403, 983, 1593, 1720
Eam1104I CTCTTC 4 cut(s) 783, 801, 936, 1679
EarI CTCTTC 4 cut(s) 783, 801, 936, 1679
EciI GGCGGA 2 cut(s) 141, 809
Eco31I GGTCTC 1 cut(s) 1028
Eco32I GATATC 1 cut(s) 373
Eco57I CTGAAG 4 cut(s) 513, 747, 960, 1679
Eco72I CACGTG 1 cut(s) 1502
EcoRII CCWGG 1 cut(s) 1004
EcoRV GATATC 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 1649
Esp3I CGTCTC 2 cut(s) 803, 1568
FaeI CATG 5 cut(s) 244, 329, 1451, 1647, 1759
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FaqI GGGAC 4 cut(s) 105, 554, 745, 1037
FatI CATG 5 cut(s) 240, 325, 1447, 1643, 1755
FauI CCCGC 1 cut(s) 1364
FblI GTMKAC 1 cut(s) 554
Fnu4HI GCNGC 6 cut(s) 155, 269, 323, 474, 1113, 1213
FokI GGATG 8 cut(s) 99, 184, 402, 572, 644, 851, 1061, 1513
Fsp4HI GCNGC 6 cut(s) 155, 269, 323, 474, 1113, 1213
FspBI CTAG 3 cut(s) 644, 824, 966
FspI TGCGCA 1 cut(s) 477
GlaI GCGC 1 cut(s) 477
GluI GCNGC 6 cut(s) 155, 269, 323, 474, 1113, 1213
HaeIII GGCC 1 cut(s) 417
HapII CCGG 3 cut(s) 201, 1058, 1530
HgaI GACGC 1 cut(s) 1607
HhaI GCGC 1 cut(s) 478
Hin1II CATG 5 cut(s) 244, 329, 1451, 1647, 1759
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HpaII CCGG 3 cut(s) 201, 1058, 1530
HphI GGTGA 6 cut(s) 124, 467, 515, 610, 710, 1466
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 4 cut(s) 25, 1084, 1619, 1769
Hpy188III TCNNGA 9 cut(s) 44, 76, 241, 764, 1031, 1518, 1530, 1718, 1785
Hpy8I GTNNAC 1 cut(s) 555
Hpy99I CGWCG 1 cut(s) 1601
HpyCH4III ACNGT 5 cut(s) 56, 739, 1039, 1566, 1699
HpyCH4IV ACGT 5 cut(s) 296, 543, 1026, 1155, 1501
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 971, 1417, 1472
HpySE526I ACGT 5 cut(s) 296, 543, 1026, 1155, 1501
Hsp92II CATG 5 cut(s) 244, 329, 1451, 1647, 1759
HspAI GCGC 1 cut(s) 476
Kpn2I TCCGGA 1 cut(s) 1529
Kzo9I GATC 7 cut(s) 7, 72, 237, 403, 983, 1593, 1720
LmnI GCTCC 2 cut(s) 359, 907
Lsp1109I GCAGC 4 cut(s) 334, 460, 1124, 1224
LweI GCATC 1 cut(s) 1336
MaeI CTAG 3 cut(s) 644, 824, 966
MaeII ACGT 5 cut(s) 296, 543, 1026, 1155, 1501
MaeIII GTNAC 6 cut(s) 112, 249, 292, 455, 487, 1709
MalI GATC 7 cut(s) 9, 74, 239, 405, 985, 1595, 1722
MboI GATC 7 cut(s) 7, 72, 237, 403, 983, 1593, 1720
MfeI CAATTG 2 cut(s) 141, 174
MflI RGATCY 2 cut(s) 7, 72
MlyI GAGTC 4 cut(s) 29, 402, 560, 1775
MmeI TCCRAC 2 cut(s) 261, 1597
Mph1103I ATGCAT 1 cut(s) 1649
MroI TCCGGA 1 cut(s) 1529
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 6 cut(s) 299, 606, 627, 1149, 1734, 1773
MslI CAYNNNNRTG 3 cut(s) 1452, 1544, 1682
MspI CCGG 3 cut(s) 201, 1058, 1530
MspR9I CCNGG 1 cut(s) 1006
MunI CAATTG 2 cut(s) 141, 174
Mva1269I GAATGC 2 cut(s) 1099, 1420
MvaI CCWGG 1 cut(s) 1006
MwoI GCNNNNNNNGC 4 cut(s) 221, 971, 1417, 1472
NdeII GATC 7 cut(s) 7, 72, 237, 403, 983, 1593, 1720
NlaIII CATG 5 cut(s) 244, 329, 1451, 1647, 1759
NlaIV GGNNCC 1 cut(s) 1689
NmeAIII GCCGAG 1 cut(s) 1141
NmuCI GTSAC 3 cut(s) 112, 455, 1709
NsbI TGCGCA 1 cut(s) 477
NsiI ATGCAT 1 cut(s) 1649
NspI RCATGY 1 cut(s) 1647
OliI CACNNNNGTG 1 cut(s) 1682
PagI TCATGA 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PctI GAATGC 2 cut(s) 1099, 1420
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 6 cut(s) 635, 652, 992, 1396, 1505, 1514
PinAI ACCGGT 1 cut(s) 1057
PkrI GCNGC 6 cut(s) 156, 270, 324, 475, 1114, 1214
PleI GAGTC 4 cut(s) 28, 402, 559, 1775
PmaCI CACGTG 1 cut(s) 1502
PmlI CACGTG 1 cut(s) 1502
PpsI GAGTC 4 cut(s) 28, 402, 559, 1775
Ppu21I YACGTR 1 cut(s) 1502
Psp1406I AACGTT 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 1004
PspCI CACGTG 1 cut(s) 1502
PspGI CCWGG 1 cut(s) 1004
PspN4I GGNNCC 1 cut(s) 1689
PsrI GAACNNNNNNTAC 2 cut(s) 1267, 1299
PstNI CAGNNNCTG 1 cut(s) 1517
PsuI RGATCY 2 cut(s) 7, 72
RsaI GTAC 3 cut(s) 642, 1263, 1563
RsaNI GTAC 3 cut(s) 641, 1262, 1562
RseI CAYNNNNRTG 3 cut(s) 1452, 1544, 1682
SaqAI TTAA 6 cut(s) 299, 606, 627, 1149, 1734, 1773
SatI GCNGC 6 cut(s) 155, 269, 323, 474, 1113, 1213
Sau3AI GATC 7 cut(s) 7, 72, 237, 403, 983, 1593, 1720
SchI GAGTC 4 cut(s) 29, 402, 560, 1775
ScrFI CCNGG 1 cut(s) 1006
SfaNI GCATC 1 cut(s) 1336
SfcI CTRYAG 2 cut(s) 1509, 1695
SmiMI CAYNNNNRTG 3 cut(s) 1452, 1544, 1682
SmlI CTYRAG 1 cut(s) 1440
SmoI CTYRAG 1 cut(s) 1440
SsiI CCGC 7 cut(s) 152, 155, 171, 269, 794, 877, 1371
SspI AATATT 1 cut(s) 579
SspMI CTAG 3 cut(s) 644, 824, 966
StyD4I CCNGG 1 cut(s) 1004
TaaI ACNGT 5 cut(s) 56, 739, 1039, 1566, 1699
TaiI ACGT 5 cut(s) 299, 546, 1029, 1158, 1504
TaqI TCGA 6 cut(s) 305, 375, 406, 411, 660, 1596
TauI GCSGC 2 cut(s) 157, 271
TfiI GAWTC 6 cut(s) 635, 652, 992, 1396, 1505, 1514
Tru1I TTAA 6 cut(s) 299, 606, 627, 1149, 1734, 1773
Tru9I TTAA 6 cut(s) 299, 606, 627, 1149, 1734, 1773
TscAI CASTG 3 cut(s) 235, 730, 856
TseFI GTSAC 3 cut(s) 112, 455, 1709
TseI GCWGC 4 cut(s) 322, 473, 1112, 1212
Tsp45I GTSAC 3 cut(s) 112, 455, 1709
TspDTI ATGAA 5 cut(s) 855, 1308, 1367, 1380, 1473
TspGWI ACGGA 4 cut(s) 416, 572, 628, 1235
TspRI CASTG 3 cut(s) 235, 730, 856
XapI RAATTY 4 cut(s) 434, 512, 1192, 1434
XceI RCATGY 1 cut(s) 1647
XmiI GTMKAC 1 cut(s) 554
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 3 cut(s) 644, 824, 966
Zsp2I ATGCAT 1 cut(s) 1649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.