Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007080

Physical Location & Seq

Genomic Coordinates Reverse (-)

31824122 .. 31827184

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1241000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGGTAATTTCTTCTGCCCCAATTGTTCTTCCGCCGCTTGTGGTTATTTCCGCAATTGGGTTTGCCGTTTCTGTTCCATCCGGTGTTGTCTTGGCAAGTTATGCTTGCACTGAGAAGATCATGAGCAAGTTGCTCCCTTATGGTGAACCTCCTCTTTTGTCGGAAAATAATGGAACGTTTTTCGAGCAAGATGAGGAATGGGAACGGGACACATGGGTAGGAGGGAAGACTGACATCGAAAAGGAAGAAGGATGGGATTGGAGGGACAGACTCGAAGGCGGTGAGATAAGAGTAGGACTTGTAGATGAGGAAAATGATGACATTATTGCTGAGGATCTACTAGGAAATGTAGTTGAAGATGTGGATGAAATTGTAGAAGAAAATGGATATCAGGAGGATGTTGCTGAGTCAACGAATAAGGAGGAAAAGCTCATATTGGATAGTGTTTATGAGGTGAAATTTGAAGGATTGACTGATGATTTTAAGGATGATTCTGTACTAGATGAGAATCAAGTCGATGAGGTGTGTGGATTGGTGTTGAACGTGACTGAGGGTGATGAAACTGATGATCAAATGGGAGTGACACCGATTGAAGTGGCTACCGTAGTAATTGAAGGCGAGGGTAAAGAAAGAGTTAGTGATATTGTAGAAGATGAGGAGTTGGTGGAAGAGACAAGGGGATTGCTAGAAAAAATAAGGGATGAAGGCAACGCTGATAATGCAATGGAGATGAACAAGCAGTATGTGGGAGAAACTGGAGGAGGTGGGGAGGTAAGAAATAAAAAAATTGGTTCACATGCTGAAGACATTGAGATACCAGTTGAAGCTAGAATTGCTGATATTGGATCGCAAGAACCGACTGGTATCTTGGAAGGTGGAGTTGGGGAAGTTCCAGAGGAATGTGAAGGTATGCAAGGATTCCAAGAAATGAGATATGCGAACGATGCAAAGACTATTTCTGAAGATGTCAAACCGACCAGAGATATTCGGAGTGTTTCGGAAAGCAAGAATGCTGAGAAAAATTTAGAAGTGGAGAAGCCAATAGGGGAAACCAAGAATGTTAACGATGTTTTAGAGGAAGAAAAGAAAATGGCAGATAAGAGAAATATGAAACCTGTGGTGAGCAGCATTGTGGAAGACGAGCAAAAGCCTGTGATAATCAGAGAGGAACCAGTACAGCAAGGAAGGAGAACCGAGGATACCATCAGTGACTTAGATTTTCAGTTGATTAAAGAGAAGGAAACTGTGGTATCCTCAAATTCAGATGCAGGCGGGCTTCATTTGTTCAATGACAAAAATGTTTCTGGTCAGCAAGAATGGTGTGCTTCTTGTGAAACTTCTGAAGGTAATGTGGGTGATGAAGCTACAGAGCTTCCCGTTTCAGGCATTGCACATGAATCTACAGATTCTGGGATGTCATCCGGAAAGGATTTCAACATGCAACCAAATGGGGTACTGTACGATGATGCTAAAATAAGGGAGAAGATCGGTGCTATGCGAAGTATAGTCGGATACAAGGGCACACCCCATGCAACATGCATAGAGGAACTGAAGGCTCTTTACCTCTTCACCGGTGTGGAACTCCCGACGATATCATTTAGTGACCCTCCTGATCTCGAACAAGTTAATCACAAACTTCGCTTTCTCATGTCCATCATCGGAGTTAAACTGGACTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

560

Amino Acids

61.55

Weight (kDa)

4.23

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65090 AT1G65090 AT1G65090 AT5G36100 AT5G36100
fragaria_vesca	FvH4_6g00830 FvH4_6g00830
malus_domestica	MD04G1241000.v1.1 MD12G1258000.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1 Prupe.6G358500_v2.0.a1 Prupe.6G358500_v2.0.a1
pyrus_communis	pycom04g21270 pycom12g23660
rosa_chinensis	RchiOBHm_Chr3g0448301
rosa_laevigata	RLG00000025929
rosa_multiflora	Rmu_co8397881.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426450
rosa_rugosa	Rorug02G0610100
rosa_samantha	Rh3AG009800 Rh3BG009300 Rh3BG009400 Rh3CG009300 Rh3DG010000
rosa_wichuraiana	Rw3G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1421
AciI	CCGC	5 cut(s)	32, 35, 51, 279, 1272
AclI	AACGTT	1 cut(s)	176
AclWI	GGATC	2 cut(s)	342, 853
AcsI	RAATTY	3 cut(s)	458, 1021, 1258
AcuI	CTGAAG	4 cut(s)	822, 981, 1362, 1571
AfaI	GTAC	4 cut(s)	498, 1176, 1455, 1460
AfiI	CCNNNNNNNGG	2 cut(s)	57, 1382
AgeI	ACCGGT	1 cut(s)	1571
AgsI	TTSAA	8 cut(s)	356, 464, 541, 593, 614, 824, 1288, 1435
AjuI	GAANNNNNNNTTGG	2 cut(s)	864, 896
AleI	CACNNNNGTG	1 cut(s)	1574
AluBI	AGCT	4 cut(s)	430, 827, 1364, 1372
AluI	AGCT	4 cut(s)	430, 827, 1364, 1372
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	2 cut(s)	342, 853
AlwNI	CAGNNNCTG	1 cut(s)	1409
Aor13HI	TCCGGA	1 cut(s)	1421
ApeKI	GCWGC	1 cut(s)	1125
ApoI	RAATTY	3 cut(s)	458, 1021, 1258
AsiGI	ACCGGT	1 cut(s)	1571
AsuHPI	GGTGA	7 cut(s)	155, 293, 466, 566, 1132, 1367, 1561
BaeGI	GKGCMC	1 cut(s)	1523
BaeI	ACNNNNGTAYC	2 cut(s)	1233, 1266
BarI	GAAGNNNNNNTAC	2 cut(s)	1544, 1576
BauI	CACGAG	1 cut(s)	1675
BbsI	GAAGAC	3 cut(s)	233, 810, 1143
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	1137
BccI	CCATC	4 cut(s)	85, 246, 1211, 1661
BceAI	ACGGC	1 cut(s)	50
BciVI	GTATCC	3 cut(s)	1192, 1261, 1505
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	4 cut(s)	341, 500, 686, 828
BfmI	CTRYAG	2 cut(s)	1365, 1401
BfuI	GTATCC	3 cut(s)	1192, 1261, 1505
BisI	GCNGC	2 cut(s)	35, 1126
BlsI	GCNGC	2 cut(s)	36, 1127
BmiI	GGNNCC	1 cut(s)	1170
BmsI	GCATC	3 cut(s)	934, 1255, 1456
BpiI	GAAGAC	3 cut(s)	233, 810, 1143
BpmI	CTGGAG	1 cut(s)	777
Bpu10I	CCTNAGC	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	1194
BsaWI	WCCGGW	3 cut(s)	80, 1421, 1571
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 1382
Bse118I	RCCGGY	1 cut(s)	1571
Bse1I	ACTGG	5 cut(s)	760, 818, 865, 1172, 1674
Bse3DI	GCAATG	2 cut(s)	729, 1386
Bse8I	GATNNNNATC	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	1421
BseDI	CCNNGG	1 cut(s)	1194
BseGI	GGATG	8 cut(s)	77, 257, 370, 403, 493, 706, 1418, 1419
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	57, 1382
BseMI	GCAATG	2 cut(s)	729, 1386
BseMII	CTCAG	5 cut(s)	102, 321, 396, 540, 1005
BseNI	ACTGG	5 cut(s)	760, 818, 865, 1172, 1674
BseRI	GAGGAG	3 cut(s)	141, 671, 774
BseSI	GKGCMC	1 cut(s)	1523
BseXI	GCAGC	1 cut(s)	1137
BshTI	ACCGGT	1 cut(s)	1571
BsiSI	CCGG	3 cut(s)	81, 1422, 1572
BslFI	GGGAC	2 cut(s)	221, 278
BslI	CCNNNNNNNGG	2 cut(s)	57, 1382
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	2 cut(s)	221, 278
BsmI	GAATGC	1 cut(s)	1015
Bsp1286I	GDGCHC	1 cut(s)	1523
Bsp13I	TCCGGA	1 cut(s)	1421
Bsp143I	GATC	6 cut(s)	117, 334, 568, 845, 1485, 1612
BspACI	CCGC	5 cut(s)	32, 35, 51, 279, 1272
BspCNI	CTCAG	5 cut(s)	103, 322, 397, 541, 1006
BspEI	TCCGGA	1 cut(s)	1421
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	1170
BspPI	GGATC	2 cut(s)	342, 853
BsrDI	GCAATG	2 cut(s)	729, 1386
BsrFI	RCCGGY	1 cut(s)	1571
BsrI	ACTGG	5 cut(s)	760, 818, 865, 1172, 1674
BssAI	RCCGGY	1 cut(s)	1571
BssECI	CCNNGG	1 cut(s)	1194
BssMI	GATC	6 cut(s)	117, 334, 568, 845, 1485, 1612
BssSI	CACGAG	1 cut(s)	1675
Bst2BI	CACGAG	1 cut(s)	1675
Bst4CI	ACNGT	3 cut(s)	604, 1246, 1458
Bst6I	CTCTTC	2 cut(s)	663, 1571
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	106, 1270, 1274
BstDEI	CTNAG	6 cut(s)	111, 330, 405, 549, 1014, 1213
BstF5I	GGATG	8 cut(s)	77, 257, 370, 403, 493, 706, 1418, 1419
BstKTI	GATC	6 cut(s)	120, 337, 571, 848, 1488, 1615
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	6 cut(s)	117, 334, 568, 845, 1485, 1612
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 719, 833, 944
BstNSI	RCATGY	3 cut(s)	800, 1441, 1539
BstSFI	CTRYAG	2 cut(s)	1365, 1401
BstSLI	GKGCMC	1 cut(s)	1523
BstV1I	GCAGC	1 cut(s)	1137
BstV2I	GAAGAC	3 cut(s)	233, 810, 1143
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuI	GTATCC	3 cut(s)	1192, 1261, 1505
BtsCI	GGATG	8 cut(s)	77, 257, 370, 403, 493, 706, 1418, 1419
BtsIMutI	CAGTG	2 cut(s)	108, 1213
Cac8I	GCNNGC	3 cut(s)	106, 1270, 1274
CaiI	CAGNNNCTG	1 cut(s)	1409
CciI	TCATGA	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	1571
Csp6I	GTAC	4 cut(s)	497, 1175, 1454, 1459
CspAI	ACCGGT	1 cut(s)	1571
CviAII	CATG	8 cut(s)	121, 213, 797, 1394, 1438, 1529, 1536, 1648
CviJI	RGCY	9 cut(s)	430, 599, 827, 1039, 1150, 1276, 1364, 1372, 1556
CviKI_1	RGCY	9 cut(s)	430, 599, 827, 1039, 1150, 1276, 1364, 1372, 1556
CviQI	GTAC	4 cut(s)	497, 1175, 1454, 1459
DdeI	CTNAG	6 cut(s)	111, 330, 405, 549, 1014, 1213
DpnI	GATC	6 cut(s)	119, 336, 570, 847, 1487, 1614
DpnII	GATC	6 cut(s)	117, 334, 568, 845, 1485, 1612
Eam1104I	CTCTTC	2 cut(s)	663, 1571
EarI	CTCTTC	2 cut(s)	663, 1571
EciI	GGCGGA	1 cut(s)	21
Eco32I	GATATC	2 cut(s)	389, 1593
Eco57I	CTGAAG	4 cut(s)	822, 981, 1362, 1571
EcoRV	GATATC	2 cut(s)	389, 1593
EcoT22I	ATGCAT	1 cut(s)	1541
FaeI	CATG	8 cut(s)	124, 216, 800, 1397, 1441, 1532, 1539, 1651
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FaqI	GGGAC	2 cut(s)	221, 278
FatI	CATG	8 cut(s)	120, 212, 796, 1393, 1437, 1528, 1535, 1647
FauI	CCCGC	1 cut(s)	1265
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	2 cut(s)	35, 1126
FokI	GGATG	8 cut(s)	64, 264, 377, 410, 500, 713, 1405, 1426
Fsp4HI	GCNGC	2 cut(s)	35, 1126
FspBI	CTAG	4 cut(s)	341, 500, 686, 828
GluI	GCNGC	2 cut(s)	35, 1126
GsuI	CTGGAG	1 cut(s)	777
HapII	CCGG	3 cut(s)	81, 1422, 1572
Hin1II	CATG	8 cut(s)	124, 216, 800, 1397, 1441, 1532, 1539, 1651
HincII	GTYRAC	2 cut(s)	411, 1063
HindII	GTYRAC	2 cut(s)	411, 1063
HinfI	GANTC	8 cut(s)	270, 407, 491, 508, 918, 1397, 1406, 1673
HpaI	GTTAAC	1 cut(s)	1063
HpaII	CCGG	3 cut(s)	81, 1422, 1572
HphI	GGTGA	7 cut(s)	155, 293, 466, 566, 1132, 1367, 1561
Hpy166II	GTNNAC	4 cut(s)	146, 411, 794, 1063
Hpy188I	TCNGA	9 cut(s)	163, 961, 990, 1000, 1163, 1264, 1342, 1511, 1661
Hpy188III	TCNNGA	8 cut(s)	121, 392, 893, 1422, 1585, 1610, 1616, 1677
Hpy8I	GTNNAC	4 cut(s)	146, 411, 794, 1063
Hpy99I	CGWCG	1 cut(s)	1591
HpyCH4III	ACNGT	3 cut(s)	604, 1246, 1458
HpyCH4IV	ACGT	2 cut(s)	176, 543
HpyCH4V	TGCA	9 cut(s)	108, 722, 913, 947, 1268, 1391, 1441, 1532, 1539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 719, 833, 944
HpyF3I	CTNAG	6 cut(s)	111, 330, 405, 549, 1014, 1213
HpySE526I	ACGT	2 cut(s)	176, 543
Hsp92II	CATG	8 cut(s)	124, 216, 800, 1397, 1441, 1532, 1539, 1651
Kpn2I	TCCGGA	1 cut(s)	1421
Ksp22I	TGATCA	1 cut(s)	568
KspAI	GTTAAC	1 cut(s)	1063
Kzo9I	GATC	6 cut(s)	117, 334, 568, 845, 1485, 1612
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	1 cut(s)	1137
LweI	GCATC	3 cut(s)	934, 1255, 1456
MaeI	CTAG	4 cut(s)	341, 500, 686, 828
MaeII	ACGT	2 cut(s)	176, 543
MaeIII	GTNAC	4 cut(s)	544, 580, 1208, 1601
MalI	GATC	6 cut(s)	119, 336, 570, 847, 1487, 1614
MboI	GATC	6 cut(s)	117, 334, 568, 845, 1485, 1612
MfeI	CAATTG	2 cut(s)	21, 54
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	1523
MlyI	GAGTC	3 cut(s)	264, 416, 1667
MmeI	TCCRAC	2 cut(s)	141, 1489
Mph1103I	ATGCAT	1 cut(s)	1541
MroI	TCCGGA	1 cut(s)	1421
MseI	TTAA	5 cut(s)	483, 1062, 1230, 1626, 1665
MslI	CAYNNNNRTG	1 cut(s)	1574
MspI	CCGG	3 cut(s)	81, 1422, 1572
MunI	CAATTG	2 cut(s)	21, 54
Mva1269I	GAATGC	1 cut(s)	1015
MwoI	GCNNNNNNNGC	4 cut(s)	101, 719, 833, 944
NdeII	GATC	6 cut(s)	117, 334, 568, 845, 1485, 1612
NlaIII	CATG	8 cut(s)	124, 216, 800, 1397, 1441, 1532, 1539, 1651
NlaIV	GGNNCC	1 cut(s)	1170
NmuCI	GTSAC	4 cut(s)	544, 580, 1208, 1601
NsiI	ATGCAT	1 cut(s)	1541
NspI	RCATGY	3 cut(s)	800, 1441, 1539
OliI	CACNNNNGTG	1 cut(s)	1574
PagI	TCATGA	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	854
PctI	GAATGC	1 cut(s)	1015
PfeI	GAWTC	5 cut(s)	491, 508, 918, 1397, 1406
PinAI	ACCGGT	1 cut(s)	1571
PkrI	GCNGC	2 cut(s)	36, 1127
PleI	GAGTC	3 cut(s)	264, 415, 1667
PpsI	GAGTC	3 cut(s)	264, 415, 1667
Psp1406I	AACGTT	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	1170
PsrI	GAACNNNNNNTAC	2 cut(s)	1183, 1215
PstNI	CAGNNNCTG	1 cut(s)	1409
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	4 cut(s)	498, 1176, 1455, 1460
RsaNI	GTAC	4 cut(s)	497, 1175, 1454, 1459
RseI	CAYNNNNRTG	1 cut(s)	1574
SaqAI	TTAA	5 cut(s)	483, 1062, 1230, 1626, 1665
SatI	GCNGC	2 cut(s)	35, 1126
Sau3AI	GATC	6 cut(s)	117, 334, 568, 845, 1485, 1612
SchI	GAGTC	3 cut(s)	264, 416, 1667
SduI	GDGCHC	1 cut(s)	1523
SfaNI	GCATC	3 cut(s)	934, 1255, 1456
SfcI	CTRYAG	2 cut(s)	1365, 1401
SgrAI	CRCCGGYG	1 cut(s)	1571
SmiMI	CAYNNNNRTG	1 cut(s)	1574
SsiI	CCGC	5 cut(s)	32, 35, 51, 279, 1272
SspMI	CTAG	4 cut(s)	341, 500, 686, 828
TaaI	ACNGT	3 cut(s)	604, 1246, 1458
TaiI	ACGT	2 cut(s)	179, 546
TaqI	TCGA	5 cut(s)	183, 237, 273, 516, 1617
TatI	WGTACW	2 cut(s)	496, 1174
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	5 cut(s)	491, 508, 918, 1397, 1406
Tru1I	TTAA	5 cut(s)	483, 1062, 1230, 1626, 1665
Tru9I	TTAA	5 cut(s)	483, 1062, 1230, 1626, 1665
TscAI	CASTG	2 cut(s)	115, 1213
TseFI	GTSAC	4 cut(s)	544, 580, 1208, 1601
TseI	GCWGC	1 cut(s)	1125
Tsp45I	GTSAC	4 cut(s)	544, 580, 1208, 1601
TspDTI	ATGAA	8 cut(s)	381, 573, 717, 746, 1124, 1268, 1374, 1410
TspRI	CASTG	2 cut(s)	115, 1213
XapI	RAATTY	3 cut(s)	458, 1021, 1258
XceI	RCATGY	3 cut(s)	800, 1441, 1539
XspI	CTAG	4 cut(s)	341, 500, 686, 828
Zsp2I	ATGCAT	1 cut(s)	1541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.