Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007080

Physical Location & Seq

Genomic Coordinates Forward (+)

616034 .. 620292

Gene Structure 4259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG010000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGGGAGATCCAAGTGGGAAGTGTGAGATTGAAGAAGATACTTATTACTGCTTTGATGAGTCCTCTCCCCAAGTAGATAATAATACTGGTAAGGTGAGTTGGATATTGAACAAGGGATGGGGGATTGGGAAGAAACTTTTGGTGACTGGTGCCGTCATTTCTTCTGCACCCTTTGTTCTCCCACCACTTGTGGTTACATCGGCGATAGCGTTTGCCTGTTGGGTTCCTTCCGGGGTCGTGTTGGCAAGTTATGCTTGTTCTGAGAAGATTATGAGTAAGTTGCTCCCTTATAATAGTAGCAGTAGTACCACAGGAGGAGTATTAATGTCAGATAATGAGGATGAAGAAGAATTTGAGGATGCGGAAGAAGGTGTAAGGGTGGATGTTGGTGAGTATTTGGATGTGGAGGAGAAGCCGATGTTGGATGGGATTAATGGGGTGATAATGGAAGGGTCGAGATATGAGTACAATGAGGATGTCCTGCTAGATGAGAATGCAATCAGTGATGGGGTGGATGTCTTGGTGTTCAATGTAAATGAGGGAGAGGAGGAGTTTGGAGTGACGCCAATTGAAGTGATCATGACAAGTGTAGTACCGGAAGGAAGCGAAGGTCAAGAAAAAGTAAGTGACTTTCTGGAAGAGGGGGAAATGGTGAAAGAGACGAGGGGATTGCTAGAGAAAATTAGGGATGAAGGCAATGCTGATGATGGAATGGAAATGGACAATCAGGATGTAGATGGAACTGCAGGATCAAGGAGGGATTCCATGTATGTATTGCAAGAGAACAATATAGTCAGTGATGAGGTGGACGTATTCGTGTCGAATGTAATTGAGGGGGAGGAGGAGATATTAATTGAAGAAATTGAGGAAAAGGAAATAGTAAATGACTTCATGGAGGATGAAGAAGTGATGAAAGAAACAAGGGGATTGCTAGAAAACATCAGGGATGCAGCTGGCAGTGCTGATAATGCAGTGGCAATGGCAGAGCTGTATGCAGGAGAAATTGAACGAGGTGAGGAGGAGACAGATGAGATAACTAGAAGTCATTTTGAAGAGACAGAGAGGGCAGTTGACAACAGAGTCACTGATGCTGATGTTGGCTTGGAGAAACCTACTCATACCATGGAAGCTGGGTTGCCAAAAGAAGGTGAAAAAAGTGAAGAAAAGAAGCATGTGACAGGTCATGTGGGTGGAGAAGGTGCAGACTTTGCAGAGCTTCCAATTATAAGCAGGGTCGATGAATCTACTGATACTAAGATATCTTCTCGGAAGAGCGACATCCATTCCAATGGGGTACTTAACAAAGAGGACAAGATATGGAAACAGATTGATGCTATCCGAAGTATCGTCGGATATAAAGTCACACCCCATGCAAGTTATATGGAGGAACTAAAGGCTCTTTACATGTTCACCGGAGTAGAGCCACCTACATTGTTCAATGACCCTCCTGATCTTGAACAAGTCAACAACAAACTCCGTTTTCTCATTATCTCCGATCTCTCTCCTCTCCCTGACCACATAATCTGCGATCTCTTCTTGAAAACTTTGAGTGCTGGAAAGCTGAATGAGAAAGTCTTGAAGCTATTCATAGCAACTGGCAAGGATGAAGTCCTTTCACTAATTGAGGCACTTAATATTCGACAGATCCATAGTCCTGTCCTTCCTACCAGTAAGTTAAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

561

Amino Acids

61.91

Weight (kDa)

4.25

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65090 AT1G65090 AT1G65090 AT5G36100 AT5G36100
fragaria_vesca	FvH4_6g00830 FvH4_6g00830
malus_domestica	MD04G1241000.v1.1 MD12G1258000.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1 Prupe.6G358500_v2.0.a1 Prupe.6G358500_v2.0.a1
pyrus_communis	pycom04g21270 pycom12g23660
rosa_chinensis	RchiOBHm_Chr3g0448301
rosa_laevigata	RLG00000025929
rosa_multiflora	Rmu_co8397881.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426450
rosa_rugosa	Rorug02G0610100
rosa_samantha	Rh3AG009800 Rh3BG009300 Rh3BG009400 Rh3CG009300 Rh3DG010000
rosa_wichuraiana	Rw3G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	291, 1226
AasI	GACNNNNNNGTC	1 cut(s)	1079
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	3 cut(s)	2, 757, 1639
AcsI	RAATTY	2 cut(s)	350, 1678
AcyI	GRCGYC	1 cut(s)	563
AfaI	GTAC	4 cut(s)	307, 467, 594, 1296
AfiI	CCNNNNNNNGG	1 cut(s)	1145
AflIII	ACRYGT	1 cut(s)	1404
AjuI	GAANNNNNNNTTGG	4 cut(s)	122, 154, 404, 436
AluBI	AGCT	6 cut(s)	953, 988, 1130, 1216, 1561, 1582
AluI	AGCT	6 cut(s)	953, 988, 1130, 1216, 1561, 1582
Alw26I	GTCTC	3 cut(s)	653, 1016, 1049
AlwI	GGATC	3 cut(s)	2, 757, 1639
ApeKI	GCWGC	1 cut(s)	950
ApoI	RAATTY	2 cut(s)	350, 1678
AseI	ATTAAT	3 cut(s)	323, 432, 851
Asp700I	GAANNNNTTC	1 cut(s)	1583
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	8 cut(s)	106, 154, 401, 451, 664, 1025, 1160, 1402
BanI	GGYRCC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	962
BccI	CCATC	5 cut(s)	111, 419, 500, 701, 731
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	652, 686
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	653, 1016, 1049
BfaI	CTAG	4 cut(s)	485, 674, 932, 1038
BfmI	CTRYAG	1 cut(s)	744
BisI	GCNGC	1 cut(s)	951
BlsI	GCNGC	1 cut(s)	952
Bme1390I	CCNGG	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	151, 225
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	4 cut(s)	349, 937, 1078, 1321
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	231, 1122
BsaWI	WCCGGW	2 cut(s)	595, 1412
Bsc4I	CCNNNNNNNGG	1 cut(s)	1145
Bse1I	ACTGG	4 cut(s)	91, 151, 1600, 1668
Bse3DI	GCAATG	2 cut(s)	703, 984
BseDI	CCNNGG	2 cut(s)	231, 1122
BseLI	CCNNNNNNNGG	1 cut(s)	1145
BseMI	GCAATG	2 cut(s)	703, 984
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	4 cut(s)	91, 151, 1600, 1668
BseRI	GAGGAG	9 cut(s)	330, 422, 560, 563, 854, 857, 1031, 1034, 1494
BseXI	GCAGC	1 cut(s)	962
BseYI	CCCAGC	1 cut(s)	1130
BsgI	GTGCAG	2 cut(s)	150, 1221
BshNI	GGYRCC	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	231, 596, 1413
BslI	CCNNNNNNNGG	1 cut(s)	1145
BsmAI	GTCTC	3 cut(s)	653, 1016, 1049
BsmBI	CGTCTC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	499
Bsp143I	GATC	7 cut(s)	7, 576, 749, 1450, 1495, 1528, 1644
Bsp19I	CCATGG	1 cut(s)	1122
BspACI	CCGC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	2 cut(s)	151, 225
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	3 cut(s)	2, 757, 1639
BspQI	GCTCTTC	1 cut(s)	1265
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	703, 984
BsrI	ACTGG	4 cut(s)	91, 151, 1600, 1668
BssECI	CCNNGG	2 cut(s)	231, 1122
BssMI	GATC	7 cut(s)	7, 576, 749, 1450, 1495, 1528, 1644
BssNI	GRCGYC	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	1122
Bst6I	CTCTTC	4 cut(s)	633, 1047, 1265, 1538
BstACI	GRCGYC	1 cut(s)	563
BstAPI	GCANNNNNTGC	2 cut(s)	251, 1208
BstC8I	GCNNGC	1 cut(s)	955
BstDEI	CTNAG	2 cut(s)	261, 1254
BstDSI	CCRYGG	1 cut(s)	1122
BstKTI	GATC	7 cut(s)	10, 579, 752, 1453, 1498, 1531, 1647
BstMAI	GTCTC	3 cut(s)	653, 1016, 1049
BstMBI	GATC	7 cut(s)	7, 576, 749, 1450, 1495, 1528, 1644
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 959, 968, 1208
BstNSI	RCATGY	2 cut(s)	1175, 1408
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	1 cut(s)	962
BstX2I	RGATCY	2 cut(s)	7, 1644
BstXI	CCANNNNNNTGG	1 cut(s)	1289
BstYI	RGATCY	2 cut(s)	7, 1644
BtgI	CCRYGG	1 cut(s)	1122
BtsI	GCAGTG	2 cut(s)	964, 978
BtsIMutI	CAGTG	5 cut(s)	508, 802, 964, 978, 1083
Cac8I	GCNNGC	1 cut(s)	955
CciI	TCATGA	1 cut(s)	579
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	4 cut(s)	306, 466, 593, 1295
CspCI	CAANNNNNGTGG	2 cut(s)	1413, 1448
CviAII	CATG	8 cut(s)	580, 766, 892, 1123, 1172, 1184, 1370, 1405
CviQI	GTAC	4 cut(s)	306, 466, 593, 1295
DdeI	CTNAG	2 cut(s)	261, 1254
DpnI	GATC	7 cut(s)	9, 578, 751, 1452, 1497, 1530, 1646
DpnII	GATC	7 cut(s)	7, 576, 749, 1450, 1495, 1528, 1644
DrdI	GACNNNNNNGTC	1 cut(s)	1079
DseDI	GACNNNNNNGTC	1 cut(s)	1079
Eam1104I	CTCTTC	4 cut(s)	633, 1047, 1265, 1538
EarI	CTCTTC	4 cut(s)	633, 1047, 1265, 1538
Eco130I	CCWWGG	1 cut(s)	1122
Eco32I	GATATC	1 cut(s)	1260
EcoRV	GATATC	1 cut(s)	1260
EcoT14I	CCWWGG	1 cut(s)	1122
ErhI	CCWWGG	1 cut(s)	1122
Esp3I	CGTCTC	1 cut(s)	653
FaeI	CATG	8 cut(s)	583, 769, 895, 1126, 1175, 1187, 1373, 1408
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FatI	CATG	8 cut(s)	579, 765, 891, 1122, 1171, 1183, 1369, 1404
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	1 cut(s)	951
Fsp4HI	GCNGC	1 cut(s)	951
FspBI	CTAG	4 cut(s)	485, 674, 932, 1038
GluI	GCNGC	1 cut(s)	951
GsaI	CCCAGC	1 cut(s)	1134
HapII	CCGG	3 cut(s)	231, 596, 1413
HgaI	GACGC	1 cut(s)	571
Hin1I	GRCGYC	1 cut(s)	563
Hin1II	CATG	8 cut(s)	583, 769, 895, 1126, 1175, 1187, 1373, 1408
HincII	GTYRAC	2 cut(s)	1072, 1465
HindII	GTYRAC	2 cut(s)	1072, 1465
HinfI	GANTC	4 cut(s)	59, 761, 1080, 1241
HpaII	CCGG	3 cut(s)	231, 596, 1413
HphI	GGTGA	8 cut(s)	106, 154, 401, 451, 664, 1025, 1160, 1402
Hpy166II	GTNNAC	4 cut(s)	808, 1072, 1410, 1465
Hpy188I	TCNGA	6 cut(s)	262, 331, 1269, 1340, 1352, 1495
Hpy188III	TCNNGA	9 cut(s)	456, 580, 614, 635, 728, 1448, 1454, 1537, 1576
Hpy8I	GTNNAC	4 cut(s)	808, 1072, 1410, 1465
Hpy99I	CGWCG	1 cut(s)	1352
HpyAV	CCTTC	9 cut(s)	237, 362, 443, 593, 602, 686, 1139, 1190, 1670
HpyCH4IV	ACGT	1 cut(s)	810
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 959, 968, 1208
HpyF3I	CTNAG	2 cut(s)	261, 1254
HpySE526I	ACGT	1 cut(s)	810
Hsp92I	GRCGYC	1 cut(s)	563
Hsp92II	CATG	8 cut(s)	583, 769, 895, 1126, 1175, 1187, 1373, 1408
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	7 cut(s)	7, 576, 749, 1450, 1495, 1528, 1644
LguI	GCTCTTC	1 cut(s)	1265
LmnI	GCTCC	1 cut(s)	288
Lsp1109I	GCAGC	1 cut(s)	962
LweI	GCATC	4 cut(s)	349, 937, 1078, 1321
MaeI	CTAG	4 cut(s)	485, 674, 932, 1038
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	7 cut(s)	142, 193, 559, 626, 1081, 1174, 1360
MalI	GATC	7 cut(s)	9, 578, 751, 1452, 1497, 1530, 1646
MboI	GATC	7 cut(s)	7, 576, 749, 1450, 1495, 1528, 1644
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	2 cut(s)	7, 1644
MlyI	GAGTC	2 cut(s)	68, 1089
MmeI	TCCRAC	3 cut(s)	80, 402, 1330
MroXI	GAANNNNTTC	1 cut(s)	1583
MseI	TTAA	6 cut(s)	323, 432, 851, 1299, 1632, 1676
MslI	CAYNNNNRTG	2 cut(s)	1188, 1287
MspA1I	CMGCKG	1 cut(s)	953
MspI	CCGG	3 cut(s)	231, 596, 1413
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	499
MwoI	GCNNNNNNNGC	4 cut(s)	251, 959, 968, 1208
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	1122
NdeII	GATC	7 cut(s)	7, 576, 749, 1450, 1495, 1528, 1644
NlaIII	CATG	8 cut(s)	583, 769, 895, 1126, 1175, 1187, 1373, 1408
NlaIV	GGNNCC	2 cut(s)	151, 225
NmuCI	GTSAC	6 cut(s)	142, 559, 626, 1081, 1174, 1360
NspI	RCATGY	2 cut(s)	1175, 1408
PagI	TCATGA	1 cut(s)	579
PciI	ACATGT	1 cut(s)	1404
PciSI	GCTCTTC	1 cut(s)	1265
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	1583
PfeI	GAWTC	2 cut(s)	761, 1241
PkrI	GCNGC	1 cut(s)	952
PleI	GAGTC	2 cut(s)	67, 1088
PpsI	GAGTC	2 cut(s)	67, 1088
PscI	ACATGT	1 cut(s)	1404
PshBI	ATTAAT	3 cut(s)	323, 432, 851
PsiI	TTATAA	2 cut(s)	291, 1226
PspFI	CCCAGC	1 cut(s)	1130
PspN4I	GGNNCC	2 cut(s)	151, 225
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	2 cut(s)	7, 1644
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	4 cut(s)	307, 467, 594, 1296
RsaNI	GTAC	4 cut(s)	306, 466, 593, 1295
RseI	CAYNNNNRTG	2 cut(s)	1188, 1287
SapI	GCTCTTC	1 cut(s)	1265
SaqAI	TTAA	6 cut(s)	323, 432, 851, 1299, 1632, 1676
SatI	GCNGC	1 cut(s)	951
Sau3AI	GATC	7 cut(s)	7, 576, 749, 1450, 1495, 1528, 1644
SchI	GAGTC	2 cut(s)	68, 1089
ScrFI	CCNGG	1 cut(s)	232
SfaNI	GCATC	4 cut(s)	349, 937, 1078, 1321
SfcI	CTRYAG	1 cut(s)	744
SmiMI	CAYNNNNRTG	2 cut(s)	1188, 1287
SsiI	CCGC	1 cut(s)	362
SspI	AATATT	1 cut(s)	1636
SspMI	CTAG	4 cut(s)	485, 674, 932, 1038
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	1122
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	4 cut(s)	455, 821, 1236, 1639
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	2 cut(s)	761, 1241
Tru1I	TTAA	6 cut(s)	323, 432, 851, 1299, 1632, 1676
Tru9I	TTAA	6 cut(s)	323, 432, 851, 1299, 1632, 1676
TscAI	CASTG	5 cut(s)	508, 802, 964, 978, 1090
TseFI	GTSAC	6 cut(s)	142, 559, 626, 1081, 1174, 1360
TseI	GCWGC	1 cut(s)	950
Tsp45I	GTSAC	6 cut(s)	142, 559, 626, 1081, 1174, 1360
TspDTI	ATGAA	8 cut(s)	357, 705, 880, 915, 926, 1254, 1576, 1620
TspGWI	ACGGA	1 cut(s)	1466
TspRI	CASTG	5 cut(s)	508, 802, 964, 978, 1090
VspI	ATTAAT	3 cut(s)	323, 432, 851
XapI	RAATTY	2 cut(s)	350, 1678
XceI	RCATGY	2 cut(s)	1175, 1408
XmnI	GAANNNNTTC	1 cut(s)	1583
XspI	CTAG	4 cut(s)	485, 674, 932, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.