Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007080

Physical Location & Seq

Genomic Coordinates Forward (+)

616034 .. 617359

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG009300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGGAGATCCAAGTGGGAAGTGTGAGATTGAAGAAGATACTTATTACTGCTTTGATGAGTCCTCTCCCCAAGTAGATAATAATACTGGTAAGGTGAGTTGGATATTGAACAAGGGATGGGGGATTGGGAAGAAACTTTTGGTGACTGGTGCCGTCATTTCTTCTGCACCCTTTGTTCTCCCACCACTTGTGGTTACATCGGCGATAGCGTTTGCCTGTTGGGTTCCTTCCGGGGTCGTGTTGGCAAGTTATGCTTGTTCTGAGAAGATTATGAGTAAGTTGCTCCCTTATAATAGTAGCAGTAGTACCACAGGAGGAGTATTAATGTCAGATAATGAGGATGAAGAAGAATTTGAGGATGCGGAAGAAGGTGTAAGGGTGGATGTTGGTGAGTATTTGGATGTGGAGGAGAAGCCGATGTTGGATGGGATTAATGGGGTGATAATGGAAGGGTCGAGATATGAGTACAATGAGGATGTCCTGCTAGATGAGAATGCAATCAGTGATGGGGTGGATGTCTTGGTGTTCAATGTAAATGAGGGAGAGGAGGAGTTTGGAGTGACGCCAATTGAAGTGATCATGACAAGTGTAGTACCGGAAGGAAGCGAAGGTCAAGAAAAAGTAAGTGACTTTCTGGAAGAGGGGGAAATGGTGAAAGAGACGAGGGGATTGCTAGAGAAAATTAGGGATGAAGGCAATGCTGATGATGGAATGGAAATGGACAATCAGGATGTAGATGGAACTGCAGGATCAAGGAGGGATTCCATGTATGTATTGCAAGAGAACAATATAGTCAGTGATGAGGTGGACGTATTCGTGTCGAATGTAATTGAGGGGGAGGAGGAGATATTAATTGAAGAAATTGAGGAAAAGGAAATAGTAAATGACTTCATGGAGGATGAAGAAGTGATGAAAGAAACAAGGGGATTGCTAGAAAACATCAGGGATGCAGCTGGCAGTGCTGATAATGCAGTGGCAATGGCAGAGCTGTATGCAGGAGAAATTGAACGAGGTGAGGAGGAGACAGATGAGATAACTAGAAGTCATTTTGAAGAGACAGAGAGGGCAGTTGACAACAGAGTCACTGATGCTGATGTTGGCTTGGAGAAACCTACTCATACCATGGAAGCTGGGTTGCCAAAAGAAGGTGAAAAAAGTGAAGAAAAGAAGCATGTGACAGGTCATGTGGGTGGAGAAGGTGCAGACTTTGCAGAGCTTCCAATTATAAGCAGGGTCGATGAATCTACTGATACTAAGATATCTTCTCGGAAGAGCGACATCCATTCCAATGGGGTTAGAGATTTGCTTTATGTTCTTCGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

441

Amino Acids

48.46

Weight (kDa)

4.11

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65090 AT1G65090 AT1G65090 AT5G36100 AT5G36100
fragaria_vesca	FvH4_6g00830 FvH4_6g00830
malus_domestica	MD04G1241000.v1.1 MD12G1258000.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1 Prupe.6G358500_v2.0.a1 Prupe.6G358500_v2.0.a1
pyrus_communis	pycom04g21270 pycom12g23660
rosa_chinensis	RchiOBHm_Chr3g0448301
rosa_laevigata	RLG00000025929
rosa_multiflora	Rmu_co8397881.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426450
rosa_rugosa	Rorug02G0610100
rosa_samantha	Rh3AG009800 Rh3BG009300 Rh3BG009400 Rh3CG009300 Rh3DG010000
rosa_wichuraiana	Rw3G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	291, 1226
AasI	GACNNNNNNGTC	1 cut(s)	1079
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	2 cut(s)	2, 757
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	563
AfaI	GTAC	3 cut(s)	307, 467, 594
AfiI	CCNNNNNNNGG	1 cut(s)	1145
AgsI	TTSAA	7 cut(s)	32, 109, 529, 572, 857, 1007, 1052
AjuI	GAANNNNNNNTTGG	4 cut(s)	122, 154, 404, 436
AluBI	AGCT	4 cut(s)	953, 988, 1130, 1216
AluI	AGCT	4 cut(s)	953, 988, 1130, 1216
Alw26I	GTCTC	3 cut(s)	653, 1016, 1049
AlwI	GGATC	2 cut(s)	2, 757
ApeKI	GCWGC	1 cut(s)	950
ApoI	RAATTY	1 cut(s)	350
AseI	ATTAAT	3 cut(s)	323, 432, 851
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	7 cut(s)	106, 154, 401, 451, 664, 1025, 1160
BanI	GGYRCC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	962
BccI	CCATC	5 cut(s)	111, 419, 500, 701, 731
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	652, 686
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	653, 1016, 1049
BfaI	CTAG	4 cut(s)	485, 674, 932, 1038
BfmI	CTRYAG	1 cut(s)	744
BisI	GCNGC	1 cut(s)	951
BlsI	GCNGC	1 cut(s)	952
Bme1390I	CCNGG	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	151, 225
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	3 cut(s)	349, 937, 1078
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	231, 1122
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	1 cut(s)	1145
Bse1I	ACTGG	2 cut(s)	91, 151
Bse3DI	GCAATG	2 cut(s)	703, 984
BseDI	CCNNGG	2 cut(s)	231, 1122
BseLI	CCNNNNNNNGG	1 cut(s)	1145
BseMI	GCAATG	2 cut(s)	703, 984
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	91, 151
BseRI	GAGGAG	8 cut(s)	330, 422, 560, 563, 854, 857, 1031, 1034
BseXI	GCAGC	1 cut(s)	962
BseYI	CCCAGC	1 cut(s)	1130
BsgI	GTGCAG	2 cut(s)	150, 1221
BshNI	GGYRCC	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	231, 596
BslI	CCNNNNNNNGG	1 cut(s)	1145
BsmAI	GTCTC	3 cut(s)	653, 1016, 1049
BsmBI	CGTCTC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	499
Bsp143I	GATC	3 cut(s)	7, 576, 749
Bsp19I	CCATGG	1 cut(s)	1122
BspACI	CCGC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	2 cut(s)	151, 225
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	2 cut(s)	2, 757
BspQI	GCTCTTC	1 cut(s)	1265
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	703, 984
BsrI	ACTGG	2 cut(s)	91, 151
BssECI	CCNNGG	2 cut(s)	231, 1122
BssMI	GATC	3 cut(s)	7, 576, 749
BssNI	GRCGYC	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	1122
Bst6I	CTCTTC	3 cut(s)	633, 1047, 1265
BstACI	GRCGYC	1 cut(s)	563
BstAPI	GCANNNNNTGC	2 cut(s)	251, 1208
BstC8I	GCNNGC	1 cut(s)	955
BstDEI	CTNAG	2 cut(s)	261, 1254
BstDSI	CCRYGG	1 cut(s)	1122
BstKTI	GATC	3 cut(s)	10, 579, 752
BstMAI	GTCTC	3 cut(s)	653, 1016, 1049
BstMBI	GATC	3 cut(s)	7, 576, 749
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 959, 968, 1208
BstNSI	RCATGY	1 cut(s)	1175
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	1 cut(s)	962
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	1289
BstYI	RGATCY	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	1122
BtsI	GCAGTG	2 cut(s)	964, 978
BtsIMutI	CAGTG	5 cut(s)	508, 802, 964, 978, 1083
Cac8I	GCNNGC	1 cut(s)	955
CciI	TCATGA	1 cut(s)	579
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	3 cut(s)	306, 466, 593
CviAII	CATG	6 cut(s)	580, 766, 892, 1123, 1172, 1184
CviJI	RGCY	6 cut(s)	415, 953, 988, 1101, 1130, 1216
CviKI_1	RGCY	6 cut(s)	415, 953, 988, 1101, 1130, 1216
CviQI	GTAC	3 cut(s)	306, 466, 593
DdeI	CTNAG	2 cut(s)	261, 1254
DpnI	GATC	3 cut(s)	9, 578, 751
DpnII	GATC	3 cut(s)	7, 576, 749
DrdI	GACNNNNNNGTC	1 cut(s)	1079
DseDI	GACNNNNNNGTC	1 cut(s)	1079
Eam1104I	CTCTTC	3 cut(s)	633, 1047, 1265
EarI	CTCTTC	3 cut(s)	633, 1047, 1265
Eco130I	CCWWGG	1 cut(s)	1122
Eco32I	GATATC	1 cut(s)	1260
EcoRV	GATATC	1 cut(s)	1260
EcoT14I	CCWWGG	1 cut(s)	1122
ErhI	CCWWGG	1 cut(s)	1122
Esp3I	CGTCTC	1 cut(s)	653
FaeI	CATG	6 cut(s)	583, 769, 895, 1126, 1175, 1187
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FatI	CATG	6 cut(s)	579, 765, 891, 1122, 1171, 1183
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	1 cut(s)	951
Fsp4HI	GCNGC	1 cut(s)	951
FspBI	CTAG	4 cut(s)	485, 674, 932, 1038
GluI	GCNGC	1 cut(s)	951
GsaI	CCCAGC	1 cut(s)	1134
HapII	CCGG	2 cut(s)	231, 596
HgaI	GACGC	1 cut(s)	571
Hin1I	GRCGYC	1 cut(s)	563
Hin1II	CATG	6 cut(s)	583, 769, 895, 1126, 1175, 1187
HincII	GTYRAC	1 cut(s)	1072
HindII	GTYRAC	1 cut(s)	1072
HinfI	GANTC	4 cut(s)	59, 761, 1080, 1241
HpaII	CCGG	2 cut(s)	231, 596
HphI	GGTGA	7 cut(s)	106, 154, 401, 451, 664, 1025, 1160
Hpy166II	GTNNAC	2 cut(s)	808, 1072
Hpy188I	TCNGA	4 cut(s)	262, 331, 1269, 1320
Hpy188III	TCNNGA	5 cut(s)	456, 580, 614, 635, 728
Hpy8I	GTNNAC	2 cut(s)	808, 1072
HpyAV	CCTTC	8 cut(s)	237, 362, 443, 593, 602, 686, 1139, 1190
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	9 cut(s)	167, 497, 746, 778, 950, 971, 995, 1202, 1211
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 959, 968, 1208
HpyF3I	CTNAG	2 cut(s)	261, 1254
HpySE526I	ACGT	1 cut(s)	810
Hsp92I	GRCGYC	1 cut(s)	563
Hsp92II	CATG	6 cut(s)	583, 769, 895, 1126, 1175, 1187
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	7, 576, 749
LguI	GCTCTTC	1 cut(s)	1265
LmnI	GCTCC	1 cut(s)	288
Lsp1109I	GCAGC	1 cut(s)	962
LweI	GCATC	3 cut(s)	349, 937, 1078
MaeI	CTAG	4 cut(s)	485, 674, 932, 1038
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	6 cut(s)	142, 193, 559, 626, 1081, 1174
MalI	GATC	3 cut(s)	9, 578, 751
MboI	GATC	3 cut(s)	7, 576, 749
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	8 cut(s)	350, 567, 681, 828, 852, 861, 1002, 1221
MlyI	GAGTC	2 cut(s)	68, 1089
MmeI	TCCRAC	2 cut(s)	80, 402
MseI	TTAA	3 cut(s)	323, 432, 851
MslI	CAYNNNNRTG	2 cut(s)	1188, 1287
MspA1I	CMGCKG	1 cut(s)	953
MspI	CCGG	2 cut(s)	231, 596
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	499
MwoI	GCNNNNNNNGC	4 cut(s)	251, 959, 968, 1208
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	1122
NdeII	GATC	3 cut(s)	7, 576, 749
NlaIII	CATG	6 cut(s)	583, 769, 895, 1126, 1175, 1187
NlaIV	GGNNCC	2 cut(s)	151, 225
NmuCI	GTSAC	5 cut(s)	142, 559, 626, 1081, 1174
NspI	RCATGY	1 cut(s)	1175
PagI	TCATGA	1 cut(s)	579
PciSI	GCTCTTC	1 cut(s)	1265
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	2 cut(s)	761, 1241
PkrI	GCNGC	1 cut(s)	952
PleI	GAGTC	2 cut(s)	67, 1088
PpsI	GAGTC	2 cut(s)	67, 1088
PshBI	ATTAAT	3 cut(s)	323, 432, 851
PsiI	TTATAA	2 cut(s)	291, 1226
PspFI	CCCAGC	1 cut(s)	1130
PspN4I	GGNNCC	2 cut(s)	151, 225
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	3 cut(s)	307, 467, 594
RsaNI	GTAC	3 cut(s)	306, 466, 593
RseI	CAYNNNNRTG	2 cut(s)	1188, 1287
SapI	GCTCTTC	1 cut(s)	1265
SaqAI	TTAA	3 cut(s)	323, 432, 851
SatI	GCNGC	1 cut(s)	951
Sau3AI	GATC	3 cut(s)	7, 576, 749
SchI	GAGTC	2 cut(s)	68, 1089
ScrFI	CCNGG	1 cut(s)	232
SfaNI	GCATC	3 cut(s)	349, 937, 1078
SfcI	CTRYAG	1 cut(s)	744
SmiMI	CAYNNNNRTG	2 cut(s)	1188, 1287
Sse9I	AATT	8 cut(s)	350, 567, 681, 828, 852, 861, 1002, 1221
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	4 cut(s)	485, 674, 932, 1038
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	1122
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	3 cut(s)	455, 821, 1236
TasI	AATT	8 cut(s)	350, 567, 681, 828, 852, 861, 1002, 1221
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	2 cut(s)	761, 1241
Tru1I	TTAA	3 cut(s)	323, 432, 851
Tru9I	TTAA	3 cut(s)	323, 432, 851
TscAI	CASTG	5 cut(s)	508, 802, 964, 978, 1090
TseFI	GTSAC	5 cut(s)	142, 559, 626, 1081, 1174
TseI	GCWGC	1 cut(s)	950
Tsp45I	GTSAC	5 cut(s)	142, 559, 626, 1081, 1174
TspDTI	ATGAA	6 cut(s)	357, 705, 880, 915, 926, 1254
TspRI	CASTG	5 cut(s)	508, 802, 964, 978, 1090
VspI	ATTAAT	3 cut(s)	323, 432, 851
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	1175
XspI	CTAG	4 cut(s)	485, 674, 932, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.