Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007080

Physical Location & Seq

Genomic Coordinates Reverse (-)

24154182 .. 24155741

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGAAGATCCAAGTGGGGAGTCCGAGCTAGAAGAAGACTCCCCTGAAGCAAACTGTGGTAAGAAAGTTCTGGTGACTGGTATGGTAATTTCTTCTGCCCCAATTGTTCTTCCGCCGCTTGTGGTTATTTCCACAATTGGGCTTGCCCTTTCTGTTCCATCCGGCGTTGCCTTGGCAAGTTATGCTTGCAGTGAGAAGATCATGAGCAAGTTACTCCCTTATAGTGAGACTCCTCCTTTGTCTGAAAATAATGTAACATTAATGTCGAATAACGAAGAATTGGAGCTTGATGAGGAATGGGAACGGGGTATGTGGGTAGGAGCGAAGACTGATATCGAAAAGGAAGAAGGATGGGATTGGAGGGATCGACTCGAAGGCCGCGAGATGAGAGTTGAATTTGTAGATGAGGAAACTGGTGACATTATTGAGGAGGATGCACAAGGAAATGTAACTGAAGATGTGAATGAAATTGAATTTGTAGAAGAAAATGGATATGAGGAGGACGTAGATGATTCTACGGATGAGGAGGAAAAGCTAATATTGGATAGTATTTATGAGGTGAAAATTAAAGGATTGAGTGAGAATTTTAAGGATGATTCCGTACTAGATGAGAATCAAGTCGACGAGGTCTGTGGATTAGTGTTCAATGTAGTTGAGGGTGATGTGCAAATGGGAGTGATACCCATTGAAGGCTCTACCGCAGCAATCAAAGAAAGCGAGGGTCAAGAAAGAGTAAATGATATAGTACAAGAGGCGGAGTTGGTGGAAGAGACGAGGGGCTTGCTAGAAAAAATTAGGGATGAAGGCAACACTGATAATGCAATGGAGATGGACAAGCAGTATGTGGGAGAAAATGAAGGAGGTGGGGAGCTAATCAATCAAAAAATTGGTTCAAATGGATTGAGATACCAGTTGAAGCTAGAATTTCTGATATTGGATCGCAAGAATCTACTAATACCAGGGAAGGTGGAGTTGCGGACATTCCAGATGAGTGTGAAGACCGTTTATGAGGATGTCAAACCGGTTAGAGATATTGGGAGTGTTTCGGAAAGCAAGAATGCGGAGAATGATTTAGCGGCCAAGAAGCCAATAGTGGAAACCAAGAATGTTAATGACGTTTCAGTGGAAGAAAAATCAAGGGCAAAAACAAGGAATTTGAAGCCTTTGGCGAGCAGCTTCACAGAAGACAAGCAAAAGCTTGTGATAAACAAAGAGGAAATAGTACAAGGAAGGAGAACCGATGATACAATCAATGAATTAGAGTTTCAGTTGATTAGAGAGAAGGAAATTGTGTTTTCAAATGCAGATGCAAGAGAGATTGCTGATGAAAGCGGGCTTCATTTGTTTGATGAGAAGAATGAATCTGGTCAGCAAGACTGGCATTCTTCTTATGGAATTTCTGAAGGTAAAGTTTTTAAACGAATCCTCATAGTAATTTCATGTTTTGGGGTTTCTTTCCCTTACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

490

Amino Acids

54.81

Weight (kDa)

4.32

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65090 AT1G65090 AT1G65090 AT5G36100 AT5G36100
fragaria_vesca	FvH4_6g00830 FvH4_6g00830
malus_domestica	MD04G1241000.v1.1 MD12G1258000.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1 Prupe.6G358500_v2.0.a1 Prupe.6G358500_v2.0.a1
pyrus_communis	pycom04g21270 pycom12g23660
rosa_chinensis	RchiOBHm_Chr3g0448301
rosa_laevigata	RLG00000025929
rosa_multiflora	Rmu_co8397881.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426450
rosa_rugosa	Rorug02G0610100
rosa_samantha	Rh3AG009800 Rh3BG009300 Rh3BG009400 Rh3CG009300 Rh3DG010000
rosa_wichuraiana	Rw3G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	621
AccII	CGCG	1 cut(s)	381
AciI	CCGC	9 cut(s)	113, 116, 379, 699, 755, 976, 1061, 1076, 1332
AclWI	GGATC	3 cut(s)	2, 372, 945
AcoI	YGGCCR	1 cut(s)	1077
AcsI	RAATTY	6 cut(s)	395, 473, 583, 923, 1153, 1395
AcuI	CTGAAG	3 cut(s)	66, 474, 1422
AfaI	GTAC	3 cut(s)	603, 747, 1224
AfiI	CCNNNNNNNGG	2 cut(s)	138, 689
AgeI	ACCGGT	1 cut(s)	1021
AgsI	TTSAA	8 cut(s)	395, 473, 646, 689, 894, 916, 1159, 1299
AjnI	CCWGG	1 cut(s)	958
AluBI	AGCT	7 cut(s)	28, 286, 535, 871, 919, 1176, 1198
AluI	AGCT	7 cut(s)	28, 286, 535, 871, 919, 1176, 1198
Alw26I	GTCTC	2 cut(s)	221, 764
AlwI	GGATC	3 cut(s)	2, 372, 945
AoxI	GGCC	2 cut(s)	376, 1077
ApeKI	GCWGC	2 cut(s)	701, 1173
ApoI	RAATTY	6 cut(s)	395, 473, 583, 923, 1153, 1395
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
AseI	ATTAAT	1 cut(s)	260
AsiGI	ACCGGT	1 cut(s)	1021
AsuHPI	GGTGA	4 cut(s)	85, 428, 571, 671
BbsI	GAAGAC	4 cut(s)	42, 332, 1004, 1191
BbvI	GCAGC	2 cut(s)	713, 1185
BccI	CCATC	3 cut(s)	166, 345, 823
BcgI	CGANNNNNNTGC	2 cut(s)	763, 797
BciT130I	CCWGG	1 cut(s)	960
BcoDI	GTCTC	2 cut(s)	221, 764
BfaI	CTAG	4 cut(s)	29, 605, 785, 920
BisI	GCNGC	5 cut(s)	116, 379, 702, 1077, 1174
BlsI	GCNGC	5 cut(s)	117, 380, 703, 1078, 1175
Bme1390I	CCNGG	1 cut(s)	960
BmrFI	CCNGG	1 cut(s)	960
BmsI	GCATC	2 cut(s)	424, 1297
BpiI	GAAGAC	4 cut(s)	42, 332, 1004, 1191
BsaBI	GATNNNNATC	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	171, 959
BsaWI	WCCGGW	1 cut(s)	1021
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 689
Bse118I	RCCGGY	1 cut(s)	1021
Bse1I	ACTGG	4 cut(s)	82, 418, 910, 1382
Bse3DI	GCAATG	1 cut(s)	828
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	960
BseDI	CCNNGG	2 cut(s)	171, 959
BseGI	GGATG	7 cut(s)	158, 356, 439, 526, 598, 805, 1018
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	2 cut(s)	138, 689
BseMI	GCAATG	1 cut(s)	828
BseNI	ACTGG	4 cut(s)	82, 418, 910, 1382
BseRI	GAGGAG	4 cut(s)	222, 443, 512, 539
BseXI	GCAGC	2 cut(s)	713, 1185
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	378, 1079
BshTI	ACCGGT	1 cut(s)	1021
BsiSI	CCGG	2 cut(s)	162, 1022
BslI	CCNNNNNNNGG	2 cut(s)	138, 689
BsmAI	GTCTC	2 cut(s)	221, 764
BsmBI	CGTCTC	1 cut(s)	764
BsmI	GAATGC	2 cut(s)	1063, 1381
BsnI	GGCC	2 cut(s)	378, 1079
Bsp143I	GATC	4 cut(s)	7, 198, 364, 937
BspACI	CCGC	9 cut(s)	113, 116, 379, 699, 755, 976, 1061, 1076, 1332
BspANI	GGCC	2 cut(s)	378, 1079
BspFNI	CGCG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	201
BspPI	GGATC	3 cut(s)	2, 372, 945
BsrDI	GCAATG	1 cut(s)	828
BsrFI	RCCGGY	1 cut(s)	1021
BsrI	ACTGG	4 cut(s)	82, 418, 910, 1382
BssAI	RCCGGY	1 cut(s)	1021
BssECI	CCNNGG	2 cut(s)	171, 959
BssMI	GATC	4 cut(s)	7, 198, 364, 937
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	960
Bst4CI	ACNGT	2 cut(s)	56, 1003
Bst6I	CTCTTC	1 cut(s)	762
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	5 cut(s)	144, 187, 782, 1171, 1334
BstF5I	GGATG	7 cut(s)	158, 356, 439, 526, 598, 805, 1018
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	4 cut(s)	10, 201, 367, 940
BstMAI	GTCTC	2 cut(s)	221, 764
BstMBI	GATC	4 cut(s)	7, 198, 364, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 1378
BstNI	CCWGG	1 cut(s)	960
BstSCI	CCNGG	1 cut(s)	958
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	713, 1185
BstV2I	GAAGAC	4 cut(s)	42, 332, 1004, 1191
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	378, 1079
BtsCI	GGATG	7 cut(s)	158, 356, 439, 526, 598, 805, 1018
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	3 cut(s)	196, 810, 1128
Cac8I	GCNNGC	5 cut(s)	144, 187, 782, 1171, 1334
CciI	TCATGA	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	1021
Csp6I	GTAC	3 cut(s)	602, 746, 1223
CspAI	ACCGGT	1 cut(s)	1021
CviAII	CATG	2 cut(s)	202, 1440
CviQI	GTAC	3 cut(s)	602, 746, 1223
DpnI	GATC	4 cut(s)	9, 200, 366, 939
DpnII	GATC	4 cut(s)	7, 198, 364, 937
DraI	TTTAAA	1 cut(s)	1417
EaeI	YGGCCR	1 cut(s)	1077
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
EciI	GGCGGA	2 cut(s)	102, 770
Eco130I	CCWWGG	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	334
Eco57I	CTGAAG	3 cut(s)	66, 474, 1422
EcoRII	CCWGG	1 cut(s)	958
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	764
FaeI	CATG	2 cut(s)	205, 1443
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FatI	CATG	2 cut(s)	201, 1439
FauI	CCCGC	1 cut(s)	1325
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	5 cut(s)	116, 379, 702, 1077, 1174
FokI	GGATG	7 cut(s)	145, 363, 446, 533, 605, 812, 1025
Fsp4HI	GCNGC	5 cut(s)	116, 379, 702, 1077, 1174
FspBI	CTAG	4 cut(s)	29, 605, 785, 920
GluI	GCNGC	5 cut(s)	116, 379, 702, 1077, 1174
HaeIII	GGCC	2 cut(s)	378, 1079
HapII	CCGG	2 cut(s)	162, 1022
Hin1II	CATG	2 cut(s)	205, 1443
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HindIII	AAGCTT	1 cut(s)	1196
HpaII	CCGG	2 cut(s)	162, 1022
HphI	GGTGA	4 cut(s)	85, 428, 571, 671
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	5 cut(s)	25, 244, 930, 1048, 1402
Hpy188III	TCNNGA	3 cut(s)	202, 725, 985
Hpy8I	GTNNAC	1 cut(s)	622
Hpy99I	CGWCG	1 cut(s)	626
HpyAV	CCTTC	9 cut(s)	341, 368, 683, 797, 851, 958, 1224, 1276, 1397
HpyCH4III	ACNGT	2 cut(s)	56, 1003
HpyCH4IV	ACGT	2 cut(s)	504, 1116
HpyCH4V	TGCA	6 cut(s)	189, 437, 667, 821, 1304, 1310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 1378
HpySE526I	ACGT	2 cut(s)	504, 1116
Hsp92II	CATG	2 cut(s)	205, 1443
Kzo9I	GATC	4 cut(s)	7, 198, 364, 937
LmnI	GCTCC	3 cut(s)	283, 320, 868
Lsp1109I	GCAGC	2 cut(s)	713, 1185
LweI	GCATC	2 cut(s)	424, 1297
MaeI	CTAG	4 cut(s)	29, 605, 785, 920
MaeII	ACGT	2 cut(s)	504, 1116
MaeIII	GTNAC	5 cut(s)	73, 210, 253, 416, 448
MalI	GATC	4 cut(s)	9, 200, 366, 939
MboI	GATC	4 cut(s)	7, 198, 364, 937
MfeI	CAATTG	2 cut(s)	102, 135
MflI	RGATCY	1 cut(s)	7
MlyI	GAGTC	4 cut(s)	29, 32, 223, 363
MseI	TTAA	5 cut(s)	260, 567, 588, 1110, 1416
MspI	CCGG	2 cut(s)	162, 1022
MspR9I	CCNGG	1 cut(s)	960
MunI	CAATTG	2 cut(s)	102, 135
Mva1269I	GAATGC	2 cut(s)	1063, 1381
MvaI	CCWGG	1 cut(s)	960
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	182, 1378
NdeII	GATC	4 cut(s)	7, 198, 364, 937
NlaIII	CATG	2 cut(s)	205, 1443
NmuCI	GTSAC	2 cut(s)	73, 416
PagI	TCATGA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PctI	GAATGC	2 cut(s)	1063, 1381
PfeI	GAWTC	6 cut(s)	512, 596, 613, 946, 1361, 1422
PflFI	GACNNNGTC	1 cut(s)	626
PinAI	ACCGGT	1 cut(s)	1021
PkrI	GCNGC	5 cut(s)	117, 380, 703, 1078, 1175
PleI	GAGTC	4 cut(s)	28, 32, 223, 363
PpsI	GAGTC	4 cut(s)	28, 32, 223, 363
PshBI	ATTAAT	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	958
PspGI	CCWGG	1 cut(s)	958
PsrI	GAACNNNNNNTAC	2 cut(s)	1228, 1260
PsuI	RGATCY	1 cut(s)	7
PsyI	GACNNNGTC	1 cut(s)	626
RsaI	GTAC	3 cut(s)	603, 747, 1224
RsaNI	GTAC	3 cut(s)	602, 746, 1223
SalI	GTCGAC	1 cut(s)	620
SaqAI	TTAA	5 cut(s)	260, 567, 588, 1110, 1416
SatI	GCNGC	5 cut(s)	116, 379, 702, 1077, 1174
Sau3AI	GATC	4 cut(s)	7, 198, 364, 937
SchI	GAGTC	4 cut(s)	29, 32, 223, 363
ScrFI	CCNGG	1 cut(s)	960
SfaNI	GCATC	2 cut(s)	424, 1297
SsiI	CCGC	9 cut(s)	113, 116, 379, 699, 755, 976, 1061, 1076, 1332
SspI	AATATT	1 cut(s)	540
SspMI	CTAG	4 cut(s)	29, 605, 785, 920
StyD4I	CCNGG	1 cut(s)	958
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	56, 1003
TaiI	ACGT	2 cut(s)	507, 1119
TaqI	TCGA	5 cut(s)	266, 336, 367, 372, 621
TatI	WGTACW	2 cut(s)	745, 1222
TauI	GCSGC	3 cut(s)	118, 381, 1079
TfiI	GAWTC	6 cut(s)	512, 596, 613, 946, 1361, 1422
Tru1I	TTAA	5 cut(s)	260, 567, 588, 1110, 1416
Tru9I	TTAA	5 cut(s)	260, 567, 588, 1110, 1416
TscAI	CASTG	3 cut(s)	196, 817, 1128
TseFI	GTSAC	2 cut(s)	73, 416
TseI	GCWGC	2 cut(s)	701, 1173
Tsp45I	GTSAC	2 cut(s)	73, 416
TspDTI	ATGAA	8 cut(s)	480, 816, 870, 1269, 1328, 1341, 1374, 1428
TspGWI	ACGGA	2 cut(s)	533, 589
TspRI	CASTG	3 cut(s)	196, 817, 1128
Tth111I	GACNNNGTC	1 cut(s)	626
VspI	ATTAAT	1 cut(s)	260
XapI	RAATTY	6 cut(s)	395, 473, 583, 923, 1153, 1395
XmiI	GTMKAC	1 cut(s)	621
XspI	CTAG	4 cut(s)	29, 605, 785, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.