Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007080

Physical Location & Seq

Genomic Coordinates Reverse (-)

49272656 .. 49275263

Gene Structure 2608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025929

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGGAGATCCAAGTGGGGAGTGTGAGATTGAAGAAGATACTTACTGCTCTGAGTACTCACCCCAAGTAGATAATAATACTGGCAAGGTGAGTTGGATATTGAACAAGGGATGGGGGATTGGGAAGAAACTTTTGGTGACTGGTGCCGTCATTTCTTCTGCGCCCTTTGTTCTCCCACCACTTGTGGTTACATCGGCGATAGCGTTTGCCTGTTGGGTTCCTTCCGGGGTCGTGTTGGCAAGTTATGTTTGTTCTGAGAAGATTATGAGTAAGTTGCTCCCTTATAATAGTAGTAGTAGTACCACAGGAGAAGTATTAATGTCAAATAATGAGGATGAAGAAGAGTTTGAGGATGCGGAAGAAGGTGTAAAGGTGGATGTCGGTGAGTATTTGGATGTGGAGGAGAAGCCGATGTTGGATGGGATTAATGGGGTGATAATGGAAGGGTCAAGATATGAGTACAATGAGGATGTCCTGCTAGATGAGAATGCAATCAGTGATGGGGTGGATGTCCTGGTGTTCAATGTAAATGAGGGAGAGGATGAGGAGTTTGGAGTGACGCCAATTGAAGTGATCATGACAAGTGTACTGGAAGGAAGCGAAGGTCAAGAAAAAGCAAGTGACTTTGTGGAAGAGGGGGAAATGGTGAAAGAGACGAGGGGATTGCTACAGAAAATTAGGGATGAAGGCAATGCTGATGATGGAATGGAAATGGACAATCAGGATGTAGATGGAACTGCAGGATCAAGGAGGGATTCCATGTATATATTGCTAGATAACAATATAGTCAGTGATGAGGTGGACGTATTTGTGTCGAATGTAATTGAGGGGGAGGAGGAGATATTAATTGAAGAACTTGAGGAAAAAGAAATAGTAAATGACTTCATGGAGGATGAAGAAGTGATGAAAGAAACAAGGGGATTGCTAGAAAACATCAGGGATGCAGCTGGCAGTGCTGATAATGCAGTGGCAATGGCAGAGCTGTATGCAGGAGAAATTGAAAGAGGTGAGGAGGAGACAGATGAGATAACTAGAAGTAATTTTGAAGAGACAGAGAGGGCAGTTGACAACAGAGTCACTGATGCTGATGTTGGCTTGGAGAAACCTACTCATACCATGGAAGCTGGGTTGCCAAAAGAAAGTGAAAAAATTGAAGAAAAGAAGCATGTAACAGGTCATGTGGGTGGAGAAGGTGCAGACTTTGCAGAGCTTCCAATTTCAAACAGGGTCAATGTTACTACTGATGCTAAGATATCTTCTCGGAAGAGCGACATCCATTCCAATGGGGTACTTAACAAAGAGGACAAGATATGGAAACAGATTGATGCTATACGAAATATCGTCGGATATAAAGTCACACCCCATGCAAGTTATATGGAGGAACTAAAGGCTCTTTACATGTTCACCGGAGTAGAGCCACCTACATCGTTCAACGACCCTCCTGATCTTGAACAAGTCGACAACAAACTCCGTTTTCTTATGTCCATAATTGGACTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

501

Amino Acids

55.18

Weight (kDa)

4.16

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65090 AT1G65090 AT1G65090 AT5G36100 AT5G36100
fragaria_vesca	FvH4_6g00830 FvH4_6g00830
malus_domestica	MD04G1241000.v1.1 MD12G1258000.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1 Prupe.6G358500_v2.0.a1 Prupe.6G358500_v2.0.a1
pyrus_communis	pycom04g21270 pycom12g23660
rosa_chinensis	RchiOBHm_Chr3g0448301
rosa_laevigata	RLG00000025929
rosa_multiflora	Rmu_co8397881.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426450
rosa_rugosa	Rorug02G0610100
rosa_samantha	Rh3AG009800 Rh3BG009300 Rh3BG009400 Rh3CG009300 Rh3DG010000
rosa_wichuraiana	Rw3G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
AasI	GACNNNNNNGTC	1 cut(s)	1073
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	1458
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	2 cut(s)	2, 751
AcyI	GRCGYC	1 cut(s)	560
AfaI	GTAC	5 cut(s)	56, 301, 461, 588, 1290
AflIII	ACRYGT	1 cut(s)	1398
AjnI	CCWGG	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	4 cut(s)	116, 148, 398, 430
AluBI	AGCT	4 cut(s)	947, 982, 1124, 1210
AluI	AGCT	4 cut(s)	947, 982, 1124, 1210
Alw26I	GTCTC	3 cut(s)	647, 1010, 1043
AlwI	GGATC	2 cut(s)	2, 751
ApeKI	GCWGC	1 cut(s)	944
AseI	ATTAAT	3 cut(s)	317, 426, 845
AspLEI	GCGC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	8 cut(s)	51, 100, 148, 395, 445, 658, 1019, 1396
BanI	GGYRCC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	956
BccI	CCATC	5 cut(s)	105, 413, 494, 695, 725
BceAI	ACGGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciT130I	CCWGG	1 cut(s)	515
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	3 cut(s)	647, 1010, 1043
BfaI	CTAG	4 cut(s)	479, 773, 926, 1032
BfmI	CTRYAG	2 cut(s)	668, 738
BisI	GCNGC	1 cut(s)	945
BlsI	GCNGC	1 cut(s)	946
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	226, 515
BmiI	GGNNCC	2 cut(s)	145, 219
BmrFI	CCNGG	2 cut(s)	226, 515
BmsI	GCATC	5 cut(s)	343, 931, 1072, 1234, 1315
BpuEI	CTTGAG	1 cut(s)	878
BpuMI	CCSGG	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	225, 1116
BsaWI	WCCGGW	1 cut(s)	1406
Bse1I	ACTGG	3 cut(s)	85, 145, 594
Bse3DI	GCAATG	2 cut(s)	697, 978
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	225, 1116
BseMI	GCAATG	2 cut(s)	697, 978
BseMII	CTCAG	2 cut(s)	42, 246
BseNI	ACTGG	3 cut(s)	85, 145, 594
BseRI	GAGGAG	6 cut(s)	416, 560, 848, 851, 1025, 1028
BseXI	GCAGC	1 cut(s)	956
BseYI	CCCAGC	1 cut(s)	1124
BsgI	GTGCAG	1 cut(s)	1215
BshNI	GGYRCC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	225, 1407
BsmAI	GTCTC	3 cut(s)	647, 1010, 1043
BsmBI	CGTCTC	1 cut(s)	647
BsmI	GAATGC	1 cut(s)	493
Bsp143I	GATC	4 cut(s)	7, 573, 743, 1444
Bsp19I	CCATGG	1 cut(s)	1116
BspACI	CCGC	1 cut(s)	356
BspCNI	CTCAG	2 cut(s)	43, 247
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	145, 219
BspMAI	CTGCAG	1 cut(s)	742
BspPI	GGATC	2 cut(s)	2, 751
BspQI	GCTCTTC	1 cut(s)	1259
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	697, 978
BsrI	ACTGG	3 cut(s)	85, 145, 594
BssECI	CCNNGG	2 cut(s)	225, 1116
BssMI	GATC	4 cut(s)	7, 573, 743, 1444
BssNI	GRCGYC	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	1116
Bst2UI	CCWGG	1 cut(s)	515
Bst6I	CTCTTC	4 cut(s)	336, 627, 1041, 1259
BstACI	GRCGYC	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	1202
BstC8I	GCNNGC	1 cut(s)	949
BstDEI	CTNAG	3 cut(s)	51, 255, 1248
BstDSI	CCRYGG	1 cut(s)	1116
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	4 cut(s)	10, 576, 746, 1447
BstMAI	GTCTC	3 cut(s)	647, 1010, 1043
BstMBI	GATC	4 cut(s)	7, 573, 743, 1444
BstMWI	GCNNNNNNNGC	3 cut(s)	953, 962, 1202
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	2 cut(s)	1169, 1402
BstSCI	CCNGG	2 cut(s)	224, 513
BstSFI	CTRYAG	2 cut(s)	668, 738
BstV1I	GCAGC	1 cut(s)	956
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	1283
BstYI	RGATCY	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	1116
BtsI	GCAGTG	2 cut(s)	958, 972
BtsIMutI	CAGTG	5 cut(s)	502, 796, 958, 972, 1077
Cac8I	GCNNGC	1 cut(s)	949
CciI	TCATGA	1 cut(s)	576
CfoI	GCGC	1 cut(s)	163
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	5 cut(s)	55, 300, 460, 587, 1289
CviAII	CATG	8 cut(s)	577, 760, 886, 1117, 1166, 1178, 1364, 1399
CviJI	RGCY	8 cut(s)	409, 947, 982, 1095, 1124, 1210, 1391, 1417
CviKI_1	RGCY	8 cut(s)	409, 947, 982, 1095, 1124, 1210, 1391, 1417
CviQI	GTAC	5 cut(s)	55, 300, 460, 587, 1289
DdeI	CTNAG	3 cut(s)	51, 255, 1248
DpnI	GATC	4 cut(s)	9, 575, 745, 1446
DpnII	GATC	4 cut(s)	7, 573, 743, 1444
DrdI	GACNNNNNNGTC	1 cut(s)	1073
DseDI	GACNNNNNNGTC	1 cut(s)	1073
Eam1104I	CTCTTC	4 cut(s)	336, 627, 1041, 1259
EarI	CTCTTC	4 cut(s)	336, 627, 1041, 1259
Eco130I	CCWWGG	1 cut(s)	1116
Eco32I	GATATC	1 cut(s)	1254
EcoRII	CCWGG	1 cut(s)	513
EcoRV	GATATC	1 cut(s)	1254
EcoT14I	CCWWGG	1 cut(s)	1116
ErhI	CCWWGG	1 cut(s)	1116
Esp3I	CGTCTC	1 cut(s)	647
FaeI	CATG	8 cut(s)	580, 763, 889, 1120, 1169, 1181, 1367, 1402
FatI	CATG	8 cut(s)	576, 759, 885, 1116, 1165, 1177, 1363, 1398
FbaI	TGATCA	1 cut(s)	573
FblI	GTMKAC	1 cut(s)	1458
Fnu4HI	GCNGC	1 cut(s)	945
Fsp4HI	GCNGC	1 cut(s)	945
FspBI	CTAG	4 cut(s)	479, 773, 926, 1032
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	945
GsaI	CCCAGC	1 cut(s)	1128
HapII	CCGG	2 cut(s)	225, 1407
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	560
Hin1II	CATG	8 cut(s)	580, 763, 889, 1120, 1169, 1181, 1367, 1402
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	2 cut(s)	1066, 1459
HindII	GTYRAC	2 cut(s)	1066, 1459
HinfI	GANTC	2 cut(s)	755, 1074
HpaII	CCGG	2 cut(s)	225, 1407
HphI	GGTGA	8 cut(s)	51, 100, 148, 395, 445, 658, 1019, 1396
Hpy166II	GTNNAC	5 cut(s)	587, 802, 1066, 1404, 1459
Hpy188I	TCNGA	4 cut(s)	52, 256, 1263, 1346
Hpy188III	TCNNGA	6 cut(s)	450, 577, 608, 722, 1442, 1448
Hpy8I	GTNNAC	5 cut(s)	587, 802, 1066, 1404, 1459
Hpy99I	CGWCG	1 cut(s)	1346
HpyAV	CCTTC	7 cut(s)	231, 356, 437, 587, 596, 680, 1184
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	8 cut(s)	491, 740, 944, 965, 989, 1196, 1205, 1367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	953, 962, 1202
HpyF3I	CTNAG	3 cut(s)	51, 255, 1248
HpySE526I	ACGT	1 cut(s)	804
Hsp92I	GRCGYC	1 cut(s)	560
Hsp92II	CATG	8 cut(s)	580, 763, 889, 1120, 1169, 1181, 1367, 1402
HspAI	GCGC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	7, 573, 743, 1444
LguI	GCTCTTC	1 cut(s)	1259
LmnI	GCTCC	1 cut(s)	282
Lsp1109I	GCAGC	1 cut(s)	956
LweI	GCATC	5 cut(s)	343, 931, 1072, 1234, 1315
MaeI	CTAG	4 cut(s)	479, 773, 926, 1032
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	8 cut(s)	136, 187, 556, 620, 1075, 1168, 1234, 1354
MalI	GATC	4 cut(s)	9, 575, 745, 1446
MboI	GATC	4 cut(s)	7, 573, 743, 1444
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	9 cut(s)	564, 675, 822, 846, 996, 1039, 1149, 1215, 1488
MlyI	GAGTC	1 cut(s)	1083
MmeI	TCCRAC	3 cut(s)	74, 396, 1324
MseI	TTAA	4 cut(s)	317, 426, 845, 1293
MslI	CAYNNNNRTG	2 cut(s)	1182, 1281
MspA1I	CMGCKG	1 cut(s)	947
MspI	CCGG	2 cut(s)	225, 1407
MspR9I	CCNGG	2 cut(s)	226, 515
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	953, 962, 1202
NciI	CCSGG	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	1116
NdeII	GATC	4 cut(s)	7, 573, 743, 1444
NlaIII	CATG	8 cut(s)	580, 763, 889, 1120, 1169, 1181, 1367, 1402
NlaIV	GGNNCC	2 cut(s)	145, 219
NmuCI	GTSAC	5 cut(s)	136, 556, 620, 1075, 1354
NspI	RCATGY	2 cut(s)	1169, 1402
PagI	TCATGA	1 cut(s)	576
PciI	ACATGT	1 cut(s)	1398
PciSI	GCTCTTC	1 cut(s)	1259
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	1 cut(s)	755
PkrI	GCNGC	1 cut(s)	946
PleI	GAGTC	1 cut(s)	1082
PpsI	GAGTC	1 cut(s)	1082
PscI	ACATGT	1 cut(s)	1398
PshBI	ATTAAT	3 cut(s)	317, 426, 845
PsiI	TTATAA	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	1124
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	145, 219
PstI	CTGCAG	1 cut(s)	742
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	947
RsaI	GTAC	5 cut(s)	56, 301, 461, 588, 1290
RsaNI	GTAC	5 cut(s)	55, 300, 460, 587, 1289
RseI	CAYNNNNRTG	2 cut(s)	1182, 1281
SalI	GTCGAC	1 cut(s)	1457
SapI	GCTCTTC	1 cut(s)	1259
SaqAI	TTAA	4 cut(s)	317, 426, 845, 1293
SatI	GCNGC	1 cut(s)	945
Sau3AI	GATC	4 cut(s)	7, 573, 743, 1444
ScaI	AGTACT	1 cut(s)	56
SchI	GAGTC	1 cut(s)	1083
ScrFI	CCNGG	2 cut(s)	226, 515
SfaNI	GCATC	5 cut(s)	343, 931, 1072, 1234, 1315
SfcI	CTRYAG	2 cut(s)	668, 738
SmiMI	CAYNNNNRTG	2 cut(s)	1182, 1281
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
Sse9I	AATT	9 cut(s)	564, 675, 822, 846, 996, 1039, 1149, 1215, 1488
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	4 cut(s)	479, 773, 926, 1032
StyD4I	CCNGG	2 cut(s)	224, 513
StyI	CCWWGG	1 cut(s)	1116
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	2 cut(s)	815, 1458
TasI	AATT	9 cut(s)	564, 675, 822, 846, 996, 1039, 1149, 1215, 1488
TatI	WGTACW	3 cut(s)	54, 459, 586
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	4 cut(s)	317, 426, 845, 1293
Tru9I	TTAA	4 cut(s)	317, 426, 845, 1293
TscAI	CASTG	5 cut(s)	502, 796, 958, 972, 1084
TseFI	GTSAC	5 cut(s)	136, 556, 620, 1075, 1354
TseI	GCWGC	1 cut(s)	944
Tsp45I	GTSAC	5 cut(s)	136, 556, 620, 1075, 1354
TspDTI	ATGAA	5 cut(s)	351, 699, 874, 909, 920
TspGWI	ACGGA	1 cut(s)	1460
TspRI	CASTG	5 cut(s)	502, 796, 958, 972, 1084
VspI	ATTAAT	3 cut(s)	317, 426, 845
XceI	RCATGY	2 cut(s)	1169, 1402
XmiI	GTMKAC	1 cut(s)	1458
XspI	CTAG	4 cut(s)	479, 773, 926, 1032
ZrmI	AGTACT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.