AT5G36100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007080
Physical Location & Seq
Reverse (-)
14191526 .. 14194176
2651 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36100.2

Sequence Viewer

Length: 888 bp
ATGGAAGAAGTCACAAGAGTGGATGGGAAGATGGGTTGGCTTTGGAGGAAAGGAGTTAGTGTGGGAAAGAAGGTTCTTGCAGCATGTTTTCTAGTGTTTTCTGCACCGTTCCTCGTTCCCGCACTCGTTGTTGCCTCCACAATCGCGTTGATTTCGTCCCTTCCTTATTGTTTTTTCTTGGTGAGCTATGTTTGTACTGAAAAGTTGATGAGAAAACTGCTTCCTGCTAATGCGTTTAGTGGAAGATGTGATCATGAAATGGTGCTACACCAGAACAAGATCAGTCACGGTGATATTTATGATGAAGCCGTTGCGCGAGTGGCTATAAGTGAGCCTGTTCTTGTTCAGATTGAAGAAGAGACAACGATCGCAATAGCTTATCGGGAAGATGAGGATATGACGAAAGAGTTAAAGAGCTGGTTAGAGAGTATAAGAGACGAGGGTAAAAATAATCAATCACTTTATAGAGGAGTCATATTGGAAAAAGGATTTGAAGAGGAGGATAAAGATCAGTCTATAGTTCCTAGAGATGCCAAGTCAGAGAATGTTAGAGCAAAACTTGAAGATCTATTAGGGAAGAAGCAAGAATCTGTGACTATACATGAAGGAGAACTTGAGTCCACTACAAGTAAAACGTCTAGAGAGAAGGATATGGAAATATCTTCAACTACGGTGTTGTATAGCGAGGAGCAGATATGGACAAAGATTGAGGCATTAAGGAAGGTAGTTGGATATAACGTTACGAGGAGCACGACTTATTCAGAAGAATTGAAGGCGCTTTACATGTTCACGGGTGTGGAATTGCCGACATCAACGTTGGAGAATCAAGATATTGCAAAAGTCAGTGAGGGGCTTTCCTTTCTAATGTCTGTTATTGGAATAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

33.21

Weight (kDa)

5.09

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 146, 316
AciI CCGC 1 cut(s) 120
AclI AACGTT 2 cut(s) 738, 815
AfaI GTAC 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 5 cut(s) 353, 494, 563, 666, 772
AleI CACNNNNGTG 2 cut(s) 17, 794
AloI GAACNNNNNNTCC 2 cut(s) 57, 89
AluBI AGCT 3 cut(s) 186, 377, 417
AluI AGCT 3 cut(s) 186, 377, 417
Alw21I GWGCWC 1 cut(s) 752
Alw26I GTCTC 2 cut(s) 353, 429
ApeKI GCWGC 1 cut(s) 80
AspLEI GCGC 2 cut(s) 316, 778
AsuHPI GGTGA 2 cut(s) 193, 302
BarI GAAGNNNNNNTAC 2 cut(s) 764, 796
Bbv12I GWGCWC 1 cut(s) 752
BbvI GCAGC 1 cut(s) 92
BccI CCATC 2 cut(s) 17, 25
BceAI ACGGC 1 cut(s) 293
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 353, 429
BfaI CTAG 3 cut(s) 92, 525, 639
BfmI CTRYAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 779
BglII AGATCT 1 cut(s) 565
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmsI GCATC 1 cut(s) 520
BpuEI CTTGAG 1 cut(s) 635
BsaBI GATNNNNATC 1 cut(s) 507
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bse8I GATNNNNATC 1 cut(s) 507
BseGI GGATG 1 cut(s) 28
BseJI GATNNNNATC 1 cut(s) 507
BseRI GAGGAG 4 cut(s) 483, 512, 701, 760
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 2 cut(s) 146, 316
Bsh1285I CGRYCG 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 752
BslFI GGGAC 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 353, 429
BsmBI CGTCTC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 752
Bsp143I GATC 5 cut(s) 250, 279, 366, 508, 565
BspACI CCGC 1 cut(s) 120
BspFNI CGCG 2 cut(s) 146, 316
BspHI TCATGA 1 cut(s) 253
BssMI GATC 5 cut(s) 250, 279, 366, 508, 565
Bst4CI ACNGT 3 cut(s) 108, 290, 673
Bst6I CTCTTC 2 cut(s) 351, 489
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 2 cut(s) 146, 316
BstH2I RGCGCY 1 cut(s) 779
BstHHI GCGC 2 cut(s) 316, 778
BstKTI GATC 5 cut(s) 253, 282, 369, 511, 568
BstMAI GTCTC 2 cut(s) 353, 429
BstMBI GATC 5 cut(s) 250, 279, 366, 508, 565
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNSI RCATGY 2 cut(s) 87, 787
BstSFI CTRYAG 1 cut(s) 516
BstUI CGCG 2 cut(s) 146, 316
BstV1I GCAGC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 850
CciI TCATGA 1 cut(s) 253
CfoI GCGC 2 cut(s) 316, 778
Csp6I GTAC 1 cut(s) 195
CviAII CATG 4 cut(s) 84, 254, 602, 784
CviJI RGCY 8 cut(s) 40, 186, 308, 323, 334, 377, 417, 853
CviKI_1 RGCY 8 cut(s) 40, 186, 308, 323, 334, 377, 417, 853
CviQI GTAC 1 cut(s) 195
DpnI GATC 5 cut(s) 252, 281, 368, 510, 567
DpnII GATC 5 cut(s) 250, 279, 366, 508, 565
Eam1104I CTCTTC 2 cut(s) 351, 489
EarI CTCTTC 2 cut(s) 351, 489
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 4 cut(s) 87, 257, 605, 787
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 1 cut(s) 142
FatI CATG 4 cut(s) 83, 253, 601, 783
FauI CCCGC 1 cut(s) 127
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 3 cut(s) 92, 525, 639
GlaI GCGC 2 cut(s) 315, 777
GluI GCNGC 1 cut(s) 81
HaeII RGCGCY 1 cut(s) 779
HhaI GCGC 2 cut(s) 316, 778
Hin1II CATG 4 cut(s) 87, 257, 605, 787
Hin6I GCGC 2 cut(s) 314, 776
HinP1I GCGC 2 cut(s) 314, 776
HinfI GANTC 4 cut(s) 471, 587, 617, 823
HphI GGTGA 2 cut(s) 193, 302
Hpy166II GTNNAC 2 cut(s) 621, 789
Hpy188I TCNGA 3 cut(s) 348, 541, 763
Hpy188III TCNNGA 4 cut(s) 254, 383, 639, 827
Hpy8I GTNNAC 2 cut(s) 621, 789
HpyAV CCTTC 6 cut(s) 64, 170, 599, 640, 715, 766
HpyCH4III ACNGT 3 cut(s) 108, 290, 673
HpyCH4IV ACGT 3 cut(s) 635, 738, 815
HpyCH4V TGCA 3 cut(s) 80, 104, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpySE526I ACGT 3 cut(s) 635, 738, 815
Hsp92II CATG 4 cut(s) 87, 257, 605, 787
HspAI GCGC 2 cut(s) 314, 776
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 5 cut(s) 250, 279, 366, 508, 565
LmnI GCTCC 2 cut(s) 688, 747
LpnPI CCDG 4 cut(s) 237, 284, 348, 403
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 520
MaeI CTAG 3 cut(s) 92, 525, 639
MaeII ACGT 3 cut(s) 635, 738, 815
MaeIII GTNAC 4 cut(s) 10, 284, 592, 739
MalI GATC 5 cut(s) 252, 281, 368, 510, 567
MboI GATC 5 cut(s) 250, 279, 366, 508, 565
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 752
MluCI AATT 2 cut(s) 767, 800
MlyI GAGTC 2 cut(s) 480, 626
MmeI TCCRAC 2 cut(s) 709, 798
MseI TTAA 2 cut(s) 410, 716
MslI CAYNNNNRTG 2 cut(s) 17, 794
MvnI CGCG 2 cut(s) 146, 316
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 5 cut(s) 250, 279, 366, 508, 565
NlaIII CATG 4 cut(s) 87, 257, 605, 787
NmuCI GTSAC 3 cut(s) 10, 284, 592
NspI RCATGY 2 cut(s) 87, 787
OliI CACNNNNGTG 2 cut(s) 17, 794
PagI TCATGA 1 cut(s) 253
PciI ACATGT 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 749
PfeI GAWTC 2 cut(s) 587, 823
PkrI GCNGC 1 cut(s) 82
Ple19I CGATCG 1 cut(s) 369
PleI GAGTC 2 cut(s) 479, 625
PpsI GAGTC 2 cut(s) 479, 625
PscI ACATGT 1 cut(s) 783
Psp1406I AACGTT 2 cut(s) 738, 815
PsuI RGATCY 1 cut(s) 565
PvuI CGATCG 1 cut(s) 369
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
RseI CAYNNNNRTG 2 cut(s) 17, 794
SaqAI TTAA 2 cut(s) 410, 716
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 5 cut(s) 250, 279, 366, 508, 565
SchI GAGTC 2 cut(s) 480, 626
SduI GDGCHC 1 cut(s) 752
SetI ASST 8 cut(s) 75, 188, 379, 419, 638, 726, 741, 818
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 1 cut(s) 516
SmiMI CAYNNNNRTG 2 cut(s) 17, 794
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
Sse9I AATT 2 cut(s) 767, 800
SsiI CCGC 1 cut(s) 120
SspMI CTAG 3 cut(s) 92, 525, 639
TaaI ACNGT 3 cut(s) 108, 290, 673
TaiI ACGT 3 cut(s) 638, 741, 818
TasI AATT 2 cut(s) 767, 800
TatI WGTACW 1 cut(s) 194
TfiI GAWTC 2 cut(s) 587, 823
Tru1I TTAA 2 cut(s) 410, 716
Tru9I TTAA 2 cut(s) 410, 716
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 3 cut(s) 10, 284, 592
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 3 cut(s) 10, 284, 592
TspDTI ATGAA 3 cut(s) 270, 318, 618
TspRI CASTG 1 cut(s) 850
XbaI TCTAGA 1 cut(s) 638
XceI RCATGY 2 cut(s) 87, 787
XspI CTAG 3 cut(s) 92, 525, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.