Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007080

Physical Location & Seq

Genomic Coordinates Forward (+)

606652 .. 608648

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGGAGATCCAAGTGGGAAGTGTGAGATTGAAGAAGATACTTACTGCTTTGATGAGTCCTCTCCCCAAGTAGATAATAATACTGGTAAGGCGAGTTGGATATTGAACAAGGGATGGGGGATTGGGAAGAAACTTTTGGTGACTGGTGCCGTCATTTCTTCTGCACCCTTTGTTCTCCCACCACTTGTGGTTACATCGGCGATAGCGTTTGCCTGTTGGGTTCCTTCCGGGGTCGTGTTGGCAAGTTATGCTTGTTCTGAGAAGATTATGAGCAAGTTGCTCCCTTATAATAGTAGTAGTAGTAGTACCACAGGAGGAGTATTAATGTCAGATAATGAGGATGAAGAAGAGTTTGAGGATGCGGAAGAAGGTGTAAGGGAGAAGCCGATGTTGGATGGGATTAATGGGGTGATAATGGAAGGGTCGAGATATGAGTACAATGAGGATGTCCTGCTAGATGAGAATGCAATCAGTGATGGGGTGGATGTCTTGGTGTTCAATGTAAATGAGGGAGAGGAGGAGTACTTTGGAGTGACGCCAATTGAAGTGATCATGACAAGTGTAGTACCGGAAGGAAGCGAAGGTAAAAAAAAAGTAAGTGACTTTCTGGAAGAGGGGGAAATGGTGAAAGAGACGAGGGGATTGCTAGAGAAAATTAGGGATGAAGGCAATGCTGATGATGGAATGGAAATGGACAATCAGGATGTAGATGGAACTGCAGGATCAAGGAGGGATTCCATGTATGTATTGCTAGATAACAATATAGTCAGTGATGAGGTGGACGTATTAGTGTCGAATGTAATATTTGAGGGGGAGGAGGAGATATTAATTGAAGAAATTGAGGAAAAGGAAATAGTAAATGACTTCATGGAGGATGAAGAAGTGATGAAAGAAACAAAGGGATTGCTAGAAAACATCAGGGATGCAGCTGGCAGTGCTGATAATGCAGTGGCAATGGCAGAGCTGTATACAGGAGAAATAGAACCAGGTGAGGAGGAGACAGATGAGATAACTAGAAGTCATTTTGAAGAGACAGAGAGTACAGTTGACAACAGAGTCACTGATGCTGATGTTGGCTTGGAGAAACCTACTCATACCATGGAAGCTGGGTTGCCAAAAGAAGGTCATGTGGGTGGAGAAGGTGCAGACTTTGCCGAGCTTCCAATTTTAAGCAGGGTCGATGAATCTACTGATGCTAAGATATCTTCTCGGAAGAGCGATATCCATTCCAATGGGGTACTTAACAAAGAGGACAAGATATGGAAACAGATTGATGCTATCCGAAGTATCGTCGGATATAAAGTCACACCCCATGCAAGTTATATGGAGGAACTAAAGGCTCTTTACATGTTCACCGGAGTAGAGCCACCTACATTGTTCAATGACCCTCCTGATCTTGAACAAGTCGACAACAAACTCCGTTTTCTCATGTCCATAATTGGACTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

483

Amino Acids

53.06

Weight (kDa)

4.16

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65090 AT1G65090 AT1G65090 AT5G36100 AT5G36100
fragaria_vesca	FvH4_6g00830 FvH4_6g00830
malus_domestica	MD04G1241000.v1.1 MD12G1258000.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1 Prupe.6G358500_v2.0.a1 Prupe.6G358500_v2.0.a1
pyrus_communis	pycom04g21270 pycom12g23660
rosa_chinensis	RchiOBHm_Chr3g0448301
rosa_laevigata	RLG00000025929
rosa_multiflora	Rmu_co8397881.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426450
rosa_rugosa	Rorug02G0610100
rosa_samantha	Rh3AG009800 Rh3BG009300 Rh3BG009400 Rh3CG009300 Rh3DG010000
rosa_wichuraiana	Rw3G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AasI	GACNNNNNNGTC	1 cut(s)	1055
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	2 cut(s)	968, 1407
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	2 cut(s)	2, 730
AcyI	GRCGYC	1 cut(s)	536
AfaI	GTAC	6 cut(s)	307, 437, 524, 567, 1042, 1239
AfiI	CCNNNNNNNGG	1 cut(s)	1121
AflIII	ACRYGT	1 cut(s)	1347
AgsI	TTSAA	8 cut(s)	32, 106, 499, 545, 833, 1028, 1381, 1400
AjnI	CCWGG	1 cut(s)	985
AjuI	GAANNNNNNNTTGG	4 cut(s)	119, 151, 374, 406
AluBI	AGCT	4 cut(s)	929, 964, 1106, 1159
AluI	AGCT	4 cut(s)	929, 964, 1106, 1159
Alw26I	GTCTC	3 cut(s)	626, 992, 1025
AlwI	GGATC	2 cut(s)	2, 730
ApeKI	GCWGC	1 cut(s)	926
AseI	ATTAAT	3 cut(s)	323, 402, 827
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	5 cut(s)	151, 421, 637, 1001, 1345
BanI	GGYRCC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	938
BccI	CCATC	5 cut(s)	108, 389, 470, 674, 704
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BciT130I	CCWGG	1 cut(s)	987
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	3 cut(s)	626, 992, 1025
BfaI	CTAG	5 cut(s)	455, 647, 752, 908, 1014
BfmI	CTRYAG	1 cut(s)	717
BisI	GCNGC	1 cut(s)	927
BlsI	GCNGC	1 cut(s)	928
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	2 cut(s)	229, 987
BmiI	GGNNCC	2 cut(s)	148, 222
BmrFI	CCNGG	2 cut(s)	229, 987
BmsI	GCATC	5 cut(s)	349, 913, 1054, 1183, 1264
BpuMI	CCSGG	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	228, 1098
BsaWI	WCCGGW	2 cut(s)	568, 1355
Bsc4I	CCNNNNNNNGG	1 cut(s)	1121
Bse1I	ACTGG	2 cut(s)	88, 148
Bse3DI	GCAATG	2 cut(s)	676, 960
BseBI	CCWGG	1 cut(s)	987
BseDI	CCNNGG	2 cut(s)	228, 1098
BseLI	CCNNNNNNNGG	1 cut(s)	1121
BseMI	GCAATG	2 cut(s)	676, 960
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	88, 148
BseRI	GAGGAG	7 cut(s)	330, 530, 533, 830, 833, 1007, 1010
BseXI	GCAGC	1 cut(s)	938
BseYI	CCCAGC	1 cut(s)	1106
BsgI	GTGCAG	2 cut(s)	147, 1164
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	228, 569, 1356
BslI	CCNNNNNNNGG	1 cut(s)	1121
BsmAI	GTCTC	3 cut(s)	626, 992, 1025
BsmBI	CGTCTC	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	7, 549, 722, 1393
Bsp19I	CCATGG	1 cut(s)	1098
BspACI	CCGC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	2 cut(s)	148, 222
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	2 cut(s)	2, 730
BspQI	GCTCTTC	1 cut(s)	1208
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	2 cut(s)	676, 960
BsrI	ACTGG	2 cut(s)	88, 148
BssECI	CCNNGG	2 cut(s)	228, 1098
BssMI	GATC	4 cut(s)	7, 549, 722, 1393
BssNAI	GTATAC	1 cut(s)	969
BssNI	GRCGYC	1 cut(s)	536
BssT1I	CCWWGG	1 cut(s)	1098
Bst1107I	GTATAC	1 cut(s)	969
Bst2UI	CCWGG	1 cut(s)	987
Bst4CI	ACNGT	1 cut(s)	1045
Bst6I	CTCTTC	4 cut(s)	342, 606, 1023, 1208
BstACI	GRCGYC	1 cut(s)	536
BstAPI	GCANNNNNTGC	2 cut(s)	248, 1151
BstC8I	GCNNGC	1 cut(s)	931
BstDEI	CTNAG	2 cut(s)	258, 1197
BstDSI	CCRYGG	1 cut(s)	1098
BstKTI	GATC	4 cut(s)	10, 552, 725, 1396
BstMAI	GTCTC	3 cut(s)	626, 992, 1025
BstMBI	GATC	4 cut(s)	7, 549, 722, 1393
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 935, 944, 1151
BstNI	CCWGG	1 cut(s)	987
BstNSI	RCATGY	1 cut(s)	1351
BstSCI	CCNGG	2 cut(s)	227, 985
BstSFI	CTRYAG	1 cut(s)	717
BstV1I	GCAGC	1 cut(s)	938
BstX2I	RGATCY	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	1232
BstYI	RGATCY	1 cut(s)	7
BstZ17I	GTATAC	1 cut(s)	969
BtgI	CCRYGG	1 cut(s)	1098
BtsI	GCAGTG	2 cut(s)	940, 954
BtsIMutI	CAGTG	5 cut(s)	478, 775, 940, 954, 1059
Cac8I	GCNNGC	1 cut(s)	931
CciI	TCATGA	1 cut(s)	552
CseI	GACGC	1 cut(s)	544
CsiI	ACCWGGT	1 cut(s)	985
Csp6I	GTAC	6 cut(s)	306, 436, 523, 566, 1041, 1238
CspCI	CAANNNNNGTGG	2 cut(s)	1356, 1391
CviAII	CATG	8 cut(s)	553, 739, 868, 1099, 1127, 1313, 1348, 1429
CviJI	RGCY	8 cut(s)	385, 929, 964, 1077, 1106, 1159, 1340, 1366
CviKI_1	RGCY	8 cut(s)	385, 929, 964, 1077, 1106, 1159, 1340, 1366
CviQI	GTAC	6 cut(s)	306, 436, 523, 566, 1041, 1238
DdeI	CTNAG	2 cut(s)	258, 1197
DpnI	GATC	4 cut(s)	9, 551, 724, 1395
DpnII	GATC	4 cut(s)	7, 549, 722, 1393
DrdI	GACNNNNNNGTC	1 cut(s)	1055
DseDI	GACNNNNNNGTC	1 cut(s)	1055
Eam1104I	CTCTTC	4 cut(s)	342, 606, 1023, 1208
EarI	CTCTTC	4 cut(s)	342, 606, 1023, 1208
Eco130I	CCWWGG	1 cut(s)	1098
Eco32I	GATATC	2 cut(s)	1203, 1222
EcoRII	CCWGG	1 cut(s)	985
EcoRV	GATATC	2 cut(s)	1203, 1222
EcoT14I	CCWWGG	1 cut(s)	1098
ErhI	CCWWGG	1 cut(s)	1098
Esp3I	CGTCTC	1 cut(s)	626
FaeI	CATG	8 cut(s)	556, 742, 871, 1102, 1130, 1316, 1351, 1432
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	8 cut(s)	552, 738, 867, 1098, 1126, 1312, 1347, 1428
FbaI	TGATCA	1 cut(s)	549
FblI	GTMKAC	2 cut(s)	968, 1407
Fnu4HI	GCNGC	1 cut(s)	927
Fsp4HI	GCNGC	1 cut(s)	927
FspBI	CTAG	5 cut(s)	455, 647, 752, 908, 1014
GluI	GCNGC	1 cut(s)	927
GsaI	CCCAGC	1 cut(s)	1110
HapII	CCGG	3 cut(s)	228, 569, 1356
HgaI	GACGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	536
Hin1II	CATG	8 cut(s)	556, 742, 871, 1102, 1130, 1316, 1351, 1432
HincII	GTYRAC	2 cut(s)	1048, 1408
HindII	GTYRAC	2 cut(s)	1048, 1408
HinfI	GANTC	4 cut(s)	56, 734, 1056, 1184
HpaII	CCGG	3 cut(s)	228, 569, 1356
HphI	GGTGA	5 cut(s)	151, 421, 637, 1001, 1345
Hpy166II	GTNNAC	5 cut(s)	781, 969, 1048, 1353, 1408
Hpy188I	TCNGA	5 cut(s)	259, 331, 1212, 1283, 1295
Hpy188III	TCNNGA	6 cut(s)	426, 553, 608, 701, 1391, 1397
Hpy8I	GTNNAC	5 cut(s)	781, 969, 1048, 1353, 1408
Hpy99I	CGWCG	1 cut(s)	1295
HpyAV	CCTTC	8 cut(s)	234, 362, 413, 566, 575, 659, 1115, 1133
HpyCH4III	ACNGT	1 cut(s)	1045
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	7 cut(s)	164, 467, 719, 926, 947, 1145, 1316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 935, 944, 1151
HpyF3I	CTNAG	2 cut(s)	258, 1197
HpySE526I	ACGT	1 cut(s)	783
Hsp92I	GRCGYC	1 cut(s)	536
Hsp92II	CATG	8 cut(s)	556, 742, 871, 1102, 1130, 1316, 1351, 1432
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	4 cut(s)	7, 549, 722, 1393
LguI	GCTCTTC	1 cut(s)	1208
LmnI	GCTCC	1 cut(s)	285
Lsp1109I	GCAGC	1 cut(s)	938
LweI	GCATC	5 cut(s)	349, 913, 1054, 1183, 1264
MabI	ACCWGGT	1 cut(s)	985
MaeI	CTAG	5 cut(s)	455, 647, 752, 908, 1014
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	6 cut(s)	139, 190, 532, 599, 1057, 1303
MalI	GATC	4 cut(s)	9, 551, 724, 1395
MboI	GATC	4 cut(s)	7, 549, 722, 1393
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	6 cut(s)	540, 654, 828, 837, 1164, 1437
MlyI	GAGTC	2 cut(s)	65, 1065
MmeI	TCCRAC	3 cut(s)	77, 372, 1273
MseI	TTAA	5 cut(s)	323, 402, 827, 1169, 1242
MslI	CAYNNNNRTG	2 cut(s)	1131, 1230
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	3 cut(s)	228, 569, 1356
MspR9I	CCNGG	2 cut(s)	229, 987
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	987
MwoI	GCNNNNNNNGC	4 cut(s)	248, 935, 944, 1151
NciI	CCSGG	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	1098
NdeII	GATC	4 cut(s)	7, 549, 722, 1393
NlaIII	CATG	8 cut(s)	556, 742, 871, 1102, 1130, 1316, 1351, 1432
NlaIV	GGNNCC	2 cut(s)	148, 222
NmeAIII	GCCGAG	1 cut(s)	1180
NmuCI	GTSAC	5 cut(s)	139, 532, 599, 1057, 1303
NspI	RCATGY	1 cut(s)	1351
PagI	TCATGA	1 cut(s)	552
PciI	ACATGT	1 cut(s)	1347
PciSI	GCTCTTC	1 cut(s)	1208
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PctI	GAATGC	1 cut(s)	469
PfeI	GAWTC	2 cut(s)	734, 1184
PkrI	GCNGC	1 cut(s)	928
PleI	GAGTC	2 cut(s)	64, 1064
PpsI	GAGTC	2 cut(s)	64, 1064
PscI	ACATGT	1 cut(s)	1347
PshBI	ATTAAT	3 cut(s)	323, 402, 827
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	985
PspFI	CCCAGC	1 cut(s)	1106
PspGI	CCWGG	1 cut(s)	985
PspN4I	GGNNCC	2 cut(s)	148, 222
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	6 cut(s)	307, 437, 524, 567, 1042, 1239
RsaNI	GTAC	6 cut(s)	306, 436, 523, 566, 1041, 1238
RseI	CAYNNNNRTG	2 cut(s)	1131, 1230
SalI	GTCGAC	1 cut(s)	1406
SapI	GCTCTTC	1 cut(s)	1208
SaqAI	TTAA	5 cut(s)	323, 402, 827, 1169, 1242
SatI	GCNGC	1 cut(s)	927
Sau3AI	GATC	4 cut(s)	7, 549, 722, 1393
ScaI	AGTACT	1 cut(s)	524
SchI	GAGTC	2 cut(s)	65, 1065
ScrFI	CCNGG	2 cut(s)	229, 987
SexAI	ACCWGGT	1 cut(s)	985
SfaNI	GCATC	5 cut(s)	349, 913, 1054, 1183, 1264
SfcI	CTRYAG	1 cut(s)	717
SmiMI	CAYNNNNRTG	2 cut(s)	1131, 1230
Sse9I	AATT	6 cut(s)	540, 654, 828, 837, 1164, 1437
SsiI	CCGC	1 cut(s)	362
SspI	AATATT	1 cut(s)	804
SspMI	CTAG	5 cut(s)	455, 647, 752, 908, 1014
StyD4I	CCNGG	2 cut(s)	227, 985
StyI	CCWWGG	1 cut(s)	1098
TaaI	ACNGT	1 cut(s)	1045
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	4 cut(s)	425, 794, 1179, 1407
TasI	AATT	6 cut(s)	540, 654, 828, 837, 1164, 1437
TatI	WGTACW	3 cut(s)	435, 522, 1040
TfiI	GAWTC	2 cut(s)	734, 1184
Tru1I	TTAA	5 cut(s)	323, 402, 827, 1169, 1242
Tru9I	TTAA	5 cut(s)	323, 402, 827, 1169, 1242
TscAI	CASTG	5 cut(s)	478, 775, 940, 954, 1066
TseFI	GTSAC	5 cut(s)	139, 532, 599, 1057, 1303
TseI	GCWGC	1 cut(s)	926
Tsp45I	GTSAC	5 cut(s)	139, 532, 599, 1057, 1303
TspDTI	ATGAA	6 cut(s)	357, 678, 856, 891, 902, 1197
TspGWI	ACGGA	1 cut(s)	1409
TspRI	CASTG	5 cut(s)	478, 775, 940, 954, 1066
VspI	ATTAAT	3 cut(s)	323, 402, 827
XceI	RCATGY	1 cut(s)	1351
XmiI	GTMKAC	2 cut(s)	968, 1407
XspI	CTAG	5 cut(s)	455, 647, 752, 908, 1014
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.