Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007080

Physical Location & Seq

Genomic Coordinates Forward (+)

47180998 .. 47186768

Gene Structure 5771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGGGAGATCCAAGTGGGAAGTGTGAGATTGAAGAAGATACTTACTGCGTTGATGAGTCCTCTTCCCAAGTAGATAATAGTACTGGAAAGGTGAGTTGGATATTGAACAAGGGATGGGGGATTGGGAAGAAACTTTTGGTGACTGGTGCCGTCATTTCTTCTGCACCCTTTGTTCTCCCACCACTTGTGGTTACATCGGCGATAGCGCTTGCCTGTTGGGTTCCTTCCGGGGTCGTGTTGGCAAGTTATGCTTGTTCTGAGAAGATTATGAGTAAGTTGCTCCCTTATAATAGTAGTAGTAGTACCACAGGAGGAGTATTAATGTCAGATAATGAGGATGAAGAAGGGTTTGAGGATGCGGAAGAAGGTGTAGGGGTGGATGTTGGTGAGTATTTGGATGTGGAGGAGAAGCCGATGTTGGATGAAATTAATGGGGTGATAATGGAAGGGTCGAGATATGAGTACAATGAGGATGTCCTACTAGATGAGAATGCAATCAGTGATGGGGTGGATGTCTTGGTGTTCAATGTAAATGAGGGAGAGGAGGAGTTTGGAGTGACGCCAATTGAAGTGATCATGACAAGTGTACTACCGGAAGGAAGCGAAGGTCAAGAAAAAGTAAGTGACTTTCAGGAAGAGGGGGAAATGGTGAAAGGGACGAGGGGATTGCTAGAGAAAATTAGGGATGAAGGCAATGCTGATGATGGAATGGAAATGGACAATCAGGATGTAGATGGAACTGCAGGATCAAGGAGGGATTCCATGTATATAATGCTAGATAACAATATAGTCAGTGATGAGGCGGAGGTATTTGTGTCGAATGTAATTGAGGGGGAGGAGGAGATATTAATTGAAGAAATTGAGGAAAAAGAAATAGTAAATGACTTCATGGAGGATGAAGAAGTGATGAAAGAAACAAGAAGATTGCTAGAAAACATCAGGGATGCAGCTGGCAGTGCTGATAATGCAGTGGCAATGGCAGCGCTGTATGCAGGAGAAATTGAAAGAGGTGAGGAGGAGGAAGATGAGATAACTAGAAGTAATTTTGAAGAGACAGAGAGGGCAGTTGACAACAAAGTCACTGATGCTGATGTTGGCTTGGAGAAGCCAACTCGTACCATGGAAGCTGGGTTGCCAAAAGAAAGTGAAAAAATTGAAGAAAAGAAGCATGTGACAGGTCATGTGGGTGTAGAAGGTGCAGACTTTGCAGAGCTTCCAATTTCAAGCAGGGTCGATGTTACTACTGATGCTAAGATATCTTCTCGGAAGAGCGACATCCATTCCAATGGGGTACTTAATAAAGAGGACAAGATATGGAAACAGATTGATGCCATACGAAATATCGTCGGATATAAAGTCACACCCCATGCAAGTTATATGGAGGAACTACAGGCTCTTTACATCTTCACCGGAGTAGAGCCACCTACATCGTTCAACGACCCTCCTGATCTTGCACAAGTCGACAACAAACTCCGTTTTCTCATGCTTGATCTGGTGAGATGGGAACTGGGTTTGTGTAAAGTTTCAATCTTTCATGACCTAATGAAAACTTTGAGTGCTGGAAAGCTGAATGAGAAAGTCTTGAAGCTATTCATAGCAACTGGCAAGGATGAAGTCCTTTCACTAATTGAGGCACTTAATATTCGGCAGATCCATAGTCCCGTCCTTCCTACCAGATGTTCTGAAAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

564

Amino Acids

62.16

Weight (kDa)

4.28

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65090 AT1G65090 AT1G65090 AT5G36100 AT5G36100
fragaria_vesca	FvH4_6g00830 FvH4_6g00830
malus_domestica	MD04G1241000.v1.1 MD12G1258000.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1 Prupe.6G358500_v2.0.a1 Prupe.6G358500_v2.0.a1
pyrus_communis	pycom04g21270 pycom12g23660
rosa_chinensis	RchiOBHm_Chr3g0448301
rosa_laevigata	RLG00000025929
rosa_multiflora	Rmu_co8397881.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426450
rosa_rugosa	Rorug02G0610100
rosa_samantha	Rh3AG009800 Rh3BG009300 Rh3BG009400 Rh3CG009300 Rh3DG010000
rosa_wichuraiana	Rw3G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AasI	GACNNNNNNGTC	1 cut(s)	1076
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	1461
AciI	CCGC	2 cut(s)	359, 803
AclWI	GGATC	3 cut(s)	2, 754, 1645
AcyI	GRCGYC	1 cut(s)	560
AfaI	GTAC	6 cut(s)	82, 304, 464, 588, 1117, 1293
AfeI	AGCGCT	2 cut(s)	207, 984
AjuI	GAANNNNNNNTTGG	6 cut(s)	79, 111, 119, 151, 401, 433
AluBI	AGCT	5 cut(s)	950, 1127, 1213, 1567, 1588
AluI	AGCT	5 cut(s)	950, 1127, 1213, 1567, 1588
Alw26I	GTCTC	1 cut(s)	1046
AlwI	GGATC	3 cut(s)	2, 754, 1645
Aor51HI	AGCGCT	2 cut(s)	207, 984
ApeKI	GCWGC	2 cut(s)	947, 980
AseI	ATTAAT	3 cut(s)	320, 429, 848
Asp700I	GAANNNNTTC	1 cut(s)	1589
AspLEI	GCGC	2 cut(s)	208, 985
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	8 cut(s)	103, 151, 398, 448, 661, 1022, 1399, 1507
BanI	GGYRCC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	959, 992
BccI	CCATC	5 cut(s)	108, 497, 698, 728, 1494
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	649, 683
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	1046
BfaI	CTAG	5 cut(s)	482, 671, 776, 929, 1035
BfmI	CTRYAG	2 cut(s)	741, 1388
BfoI	RGCGCY	2 cut(s)	209, 986
BisI	GCNGC	2 cut(s)	948, 981
BlsI	GCNGC	2 cut(s)	949, 982
BmcAI	AGTACT	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	148, 222
BmrFI	CCNGG	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	1517
BmsI	GCATC	5 cut(s)	346, 934, 1075, 1237, 1318
BmuI	ACTGGG	1 cut(s)	1517
BpuMI	CCSGG	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	228, 1119
BsaWI	WCCGGW	2 cut(s)	592, 1409
Bse1I	ACTGG	4 cut(s)	88, 148, 1512, 1606
Bse3DI	GCAATG	2 cut(s)	700, 981
BseDI	CCNNGG	2 cut(s)	228, 1119
BseMI	GCAATG	2 cut(s)	700, 981
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	4 cut(s)	88, 148, 1512, 1606
BseRI	GAGGAG	8 cut(s)	327, 419, 557, 560, 851, 854, 1028, 1031
BseXI	GCAGC	2 cut(s)	959, 992
BseYI	CCCAGC	1 cut(s)	1127
BsgI	GTGCAG	2 cut(s)	147, 1218
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	228, 593, 1410
BslFI	GGGAC	2 cut(s)	670, 1644
BsmAI	GTCTC	1 cut(s)	1046
BsmFI	GGGAC	2 cut(s)	670, 1644
BsmI	GAATGC	1 cut(s)	496
Bsp143I	GATC	6 cut(s)	7, 573, 746, 1447, 1489, 1650
Bsp19I	CCATGG	1 cut(s)	1119
BspACI	CCGC	2 cut(s)	359, 803
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	2 cut(s)	576, 1534
BspLI	GGNNCC	2 cut(s)	148, 222
BspMAI	CTGCAG	1 cut(s)	745
BspPI	GGATC	3 cut(s)	2, 754, 1645
BspQI	GCTCTTC	1 cut(s)	1262
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	2 cut(s)	700, 981
BsrI	ACTGG	4 cut(s)	88, 148, 1512, 1606
BssECI	CCNNGG	2 cut(s)	228, 1119
BssMI	GATC	6 cut(s)	7, 573, 746, 1447, 1489, 1650
BssNI	GRCGYC	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	1119
Bst6I	CTCTTC	4 cut(s)	67, 630, 1044, 1262
BstACI	GRCGYC	1 cut(s)	560
BstAPI	GCANNNNNTGC	2 cut(s)	248, 1205
BstC8I	GCNNGC	2 cut(s)	210, 952
BstDEI	CTNAG	2 cut(s)	258, 1251
BstDSI	CCRYGG	1 cut(s)	1119
BstH2I	RGCGCY	2 cut(s)	209, 986
BstHHI	GCGC	2 cut(s)	208, 985
BstKTI	GATC	6 cut(s)	10, 576, 749, 1450, 1492, 1653
BstMAI	GTCTC	1 cut(s)	1046
BstMBI	GATC	6 cut(s)	7, 573, 746, 1447, 1489, 1650
BstMWI	GCNNNNNNNGC	6 cut(s)	248, 956, 965, 980, 989, 1205
BstNSI	RCATGY	1 cut(s)	1172
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	2 cut(s)	741, 1388
BstV1I	GCAGC	2 cut(s)	959, 992
BstX2I	RGATCY	2 cut(s)	7, 1650
BstXI	CCANNNNNNTGG	1 cut(s)	1286
BstYI	RGATCY	2 cut(s)	7, 1650
BtgI	CCRYGG	1 cut(s)	1119
BtsI	GCAGTG	2 cut(s)	961, 975
BtsIMutI	CAGTG	5 cut(s)	505, 799, 961, 975, 1080
Cac8I	GCNNGC	2 cut(s)	210, 952
CciI	TCATGA	2 cut(s)	576, 1534
CfoI	GCGC	2 cut(s)	208, 985
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	6 cut(s)	81, 303, 463, 587, 1116, 1292
CviAII	CATG	9 cut(s)	577, 763, 889, 1120, 1169, 1181, 1367, 1483, 1535
CviQI	GTAC	6 cut(s)	81, 303, 463, 587, 1116, 1292
DdeI	CTNAG	2 cut(s)	258, 1251
DpnI	GATC	6 cut(s)	9, 575, 748, 1449, 1491, 1652
DpnII	GATC	6 cut(s)	7, 573, 746, 1447, 1489, 1650
DrdI	GACNNNNNNGTC	1 cut(s)	1076
DseDI	GACNNNNNNGTC	1 cut(s)	1076
Eam1104I	CTCTTC	4 cut(s)	67, 630, 1044, 1262
EarI	CTCTTC	4 cut(s)	67, 630, 1044, 1262
EciI	GGCGGA	1 cut(s)	818
Eco130I	CCWWGG	1 cut(s)	1119
Eco32I	GATATC	1 cut(s)	1257
Eco47III	AGCGCT	2 cut(s)	207, 984
EcoRV	GATATC	1 cut(s)	1257
EcoT14I	CCWWGG	1 cut(s)	1119
ErhI	CCWWGG	1 cut(s)	1119
FaeI	CATG	9 cut(s)	580, 766, 892, 1123, 1172, 1184, 1370, 1486, 1538
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FaqI	GGGAC	2 cut(s)	670, 1644
FatI	CATG	9 cut(s)	576, 762, 888, 1119, 1168, 1180, 1366, 1482, 1534
FbaI	TGATCA	1 cut(s)	573
FblI	GTMKAC	1 cut(s)	1461
Fnu4HI	GCNGC	2 cut(s)	948, 981
Fsp4HI	GCNGC	2 cut(s)	948, 981
FspBI	CTAG	5 cut(s)	482, 671, 776, 929, 1035
GlaI	GCGC	2 cut(s)	207, 984
GluI	GCNGC	2 cut(s)	948, 981
GsaI	CCCAGC	1 cut(s)	1131
HaeII	RGCGCY	2 cut(s)	209, 986
HapII	CCGG	3 cut(s)	228, 593, 1410
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	2 cut(s)	208, 985
Hin1I	GRCGYC	1 cut(s)	560
Hin1II	CATG	9 cut(s)	580, 766, 892, 1123, 1172, 1184, 1370, 1486, 1538
Hin6I	GCGC	2 cut(s)	206, 983
HinP1I	GCGC	2 cut(s)	206, 983
HincII	GTYRAC	2 cut(s)	1069, 1462
HindII	GTYRAC	2 cut(s)	1069, 1462
HinfI	GANTC	2 cut(s)	56, 758
HpaII	CCGG	3 cut(s)	228, 593, 1410
HphI	GGTGA	8 cut(s)	103, 151, 398, 448, 661, 1022, 1399, 1507
Hpy166II	GTNNAC	3 cut(s)	587, 1069, 1462
Hpy188I	TCNGA	6 cut(s)	259, 328, 1266, 1349, 1684, 1694
Hpy188III	TCNNGA	8 cut(s)	453, 577, 611, 632, 725, 1445, 1535, 1582
Hpy8I	GTNNAC	3 cut(s)	587, 1069, 1462
Hpy99I	CGWCG	1 cut(s)	1349
HpyAV	CCTTC	9 cut(s)	234, 338, 359, 440, 590, 599, 683, 1187, 1676
HpyF10VI	GCNNNNNNNGC	6 cut(s)	248, 956, 965, 980, 989, 1205
HpyF3I	CTNAG	2 cut(s)	258, 1251
Hsp92I	GRCGYC	1 cut(s)	560
Hsp92II	CATG	9 cut(s)	580, 766, 892, 1123, 1172, 1184, 1370, 1486, 1538
HspAI	GCGC	2 cut(s)	206, 983
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	6 cut(s)	7, 573, 746, 1447, 1489, 1650
LguI	GCTCTTC	1 cut(s)	1262
LmnI	GCTCC	1 cut(s)	285
Lsp1109I	GCAGC	2 cut(s)	959, 992
LweI	GCATC	5 cut(s)	346, 934, 1075, 1237, 1318
MaeI	CTAG	5 cut(s)	482, 671, 776, 929, 1035
MaeIII	GTNAC	8 cut(s)	139, 190, 556, 623, 1078, 1171, 1237, 1357
MalI	GATC	6 cut(s)	9, 575, 748, 1449, 1491, 1652
MboI	GATC	6 cut(s)	7, 573, 746, 1447, 1489, 1650
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	2 cut(s)	7, 1650
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	3 cut(s)	77, 399, 1327
MroXI	GAANNNNTTC	1 cut(s)	1589
MseI	TTAA	5 cut(s)	320, 429, 848, 1296, 1638
MslI	CAYNNNNRTG	2 cut(s)	1185, 1284
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	3 cut(s)	228, 593, 1410
MspR9I	CCNGG	1 cut(s)	229
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	6 cut(s)	248, 956, 965, 980, 989, 1205
NciI	CCSGG	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	1119
NdeII	GATC	6 cut(s)	7, 573, 746, 1447, 1489, 1650
NlaIII	CATG	9 cut(s)	580, 766, 892, 1123, 1172, 1184, 1370, 1486, 1538
NlaIV	GGNNCC	2 cut(s)	148, 222
NmuCI	GTSAC	6 cut(s)	139, 556, 623, 1078, 1171, 1357
NspI	RCATGY	1 cut(s)	1172
PagI	TCATGA	2 cut(s)	576, 1534
PciSI	GCTCTTC	1 cut(s)	1262
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	1589
PfeI	GAWTC	1 cut(s)	758
PkrI	GCNGC	2 cut(s)	949, 982
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PshBI	ATTAAT	3 cut(s)	320, 429, 848
PsiI	TTATAA	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	1127
PspN4I	GGNNCC	2 cut(s)	148, 222
PstI	CTGCAG	1 cut(s)	745
PsuI	RGATCY	2 cut(s)	7, 1650
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	6 cut(s)	82, 304, 464, 588, 1117, 1293
RsaNI	GTAC	6 cut(s)	81, 303, 463, 587, 1116, 1292
RseI	CAYNNNNRTG	2 cut(s)	1185, 1284
SalI	GTCGAC	1 cut(s)	1460
SapI	GCTCTTC	1 cut(s)	1262
SaqAI	TTAA	5 cut(s)	320, 429, 848, 1296, 1638
SatI	GCNGC	2 cut(s)	948, 981
Sau3AI	GATC	6 cut(s)	7, 573, 746, 1447, 1489, 1650
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	229
SfaNI	GCATC	5 cut(s)	346, 934, 1075, 1237, 1318
SfcI	CTRYAG	2 cut(s)	741, 1388
SmiMI	CAYNNNNRTG	2 cut(s)	1185, 1284
SsiI	CCGC	2 cut(s)	359, 803
SspI	AATATT	1 cut(s)	1642
SspMI	CTAG	5 cut(s)	482, 671, 776, 929, 1035
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	1119
TaqI	TCGA	4 cut(s)	452, 818, 1233, 1461
TatI	WGTACW	3 cut(s)	80, 462, 586
TfiI	GAWTC	1 cut(s)	758
Tru1I	TTAA	5 cut(s)	320, 429, 848, 1296, 1638
Tru9I	TTAA	5 cut(s)	320, 429, 848, 1296, 1638
TscAI	CASTG	5 cut(s)	505, 799, 961, 975, 1087
TseFI	GTSAC	6 cut(s)	139, 556, 623, 1078, 1171, 1357
TseI	GCWGC	2 cut(s)	947, 980
Tsp45I	GTSAC	6 cut(s)	139, 556, 623, 1078, 1171, 1357
TspGWI	ACGGA	1 cut(s)	1463
TspRI	CASTG	5 cut(s)	505, 799, 961, 975, 1087
VspI	ATTAAT	3 cut(s)	320, 429, 848
XceI	RCATGY	1 cut(s)	1172
XmiI	GTMKAC	1 cut(s)	1461
XmnI	GAANNNNTTC	1 cut(s)	1589
XspI	CTAG	5 cut(s)	482, 671, 776, 929, 1035
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.