Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007080

Physical Location & Seq

Genomic Coordinates Reverse (-)

22515375 .. 22517742

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGGTAATTTCTTCTGCCCCAATTGTTCTTCCGCCGCTTGTGGTTATTTCCGCAATTGGGTTTGCCCTTTCTGTTCCATCCGGTGTTGTCTTGGCAAGTTATGCTTGCACTGAGAAGATCATGAGCAAGTTGCTCCCTTATGGTGAACCTCCTTTTTTGTCAGAAAATAATGGAACGTTAATGTCGAATAACGAAGAATTCGAGCAAGATGAGGAATGGGAACAGGACACATGGGTAGGAGGGAAGACTGACATCGAAAAGGAAGAAGGGTGGGATTGGAGGGATAGACTTGAAGGCGGCGAGATGAGAGTAGAATTTGTGGATGAGGAAAATGATGCCATCATTGCGGAGGATTCACAAGGAAATGTAACTGAAGATGCGGATGAAAATGTAGAAGAAAATGGATATCAGGAGGATGTTGATGAGTCTACGAATAAGAAGGAAAAGCTAATATTGGATAGTATTTACAAGGTGAAATTTGAAGGATTGACTGATGATTTAAAGGATGATTCTGTACTAGATGAGAATCAAGTCGACGAGGTGTGTGGATTGGTATTGAATGTGATTGAGGGTGATGAAACTGATGATCAAATGGGAGTGGCACTGATTGAAGTGACTAGCGTAGTAATCGAAGAGAGTGAGGATCAAGAAAGAGTAAGTGATATTGTAGAAGATGAGGAGTTGGTGGAAGAGACAAGGGGATTGCTAGAAAAAATAAGGGATGAAGGCAACGCTGATAATGCAATGGAGATGAACAAGCAGTATGTGGGAGAAACTGGAGGAGGTGGGGAGGTAAGAAATAAAAAAATTGGTTCACATGCTGAAGACATTGAGATACCAGTTGAAGCTAGAATTGCTGGTATTGGATCGCAAGAACCGACTAGTATCTTGGAAGGTGGAGTTGGGGAAGTATCAGATGAATGTGAAGGTATGCAAGGATTCCAAGAAATGAGATGTGCGAACGATGCAAAGACTGTTTCTGAAGATGTCAAACCGACTAGAGATATTGGGAGTGTTTCGGAAAGCAAGAATGCTGAGAAAAATTTAGAAGTGGAGAAGCCAATAGGGGAAACCAAGAATGTTAACGATGTTTTAGAGGAAGAAAAGAGAATGGCAGATAAGAGAAATATGAAACCTGTGGTGAGCAGCATTGTGGAAGACGAGCAAAAGCCTGTGATAATCAGAGAGGAACCAGTACAGGAAGGAAGGAGAACCAAGGATAGCATCAGTGACGTAGATTTTCGGTTGATTAAAGAGAAGGAAACTGTGGTATCCTCAAATTCATATGCAGGCGGGCTTCATTTGTTCAATGACAAAAATGTTTCTGGTCAGCAAGACTGGTGTGCTTCTTGTGAAACTTCTGAAGGTAATGTGGGTGATGAAGTTACAGAGCTTCCCGTTTCAGGCATTGCTCATGAATCTACAGATTCTGGGATGTCATCCGGAAAGGACTTCAACGTGCATTCAAATGGGGTACTGTACGATGAGGCTAAAATACGGGAGAAGATTGGTGCTGTGCGAAGTATAGTCGGATACAAGGGCACACCCCATGCAACATGCATAGAGGAACTGAAAGCTCTTTACCTCTTCACCGGTGTAGAACCTCCGACGATATCATTTGGTGACCCTCCCGATCTCGAACAAGTTAATCACAAACTTCGCTTTCTCATGTCCATCATCGGAGTTAAACTGGACTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

567

Amino Acids

62.3

Weight (kDa)

4.25

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65090 AT1G65090 AT1G65090 AT5G36100 AT5G36100
fragaria_vesca	FvH4_6g00830 FvH4_6g00830
malus_domestica	MD04G1241000.v1.1 MD12G1258000.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1 Prupe.6G358500_v2.0.a1 Prupe.6G358500_v2.0.a1
pyrus_communis	pycom04g21270 pycom12g23660
rosa_chinensis	RchiOBHm_Chr3g0448301
rosa_laevigata	RLG00000025929
rosa_multiflora	Rmu_co8397881.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426450
rosa_rugosa	Rorug02G0610100
rosa_samantha	Rh3AG009800 Rh3BG009300 Rh3BG009400 Rh3CG009300 Rh3DG010000
rosa_wichuraiana	Rw3G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	428, 534
AccIII	TCCGGA	1 cut(s)	1442
AciI	CCGC	7 cut(s)	32, 35, 51, 297, 347, 380, 1293
AclI	AACGTT	1 cut(s)	176
AclWI	GGATC	2 cut(s)	651, 874
AcsI	RAATTY	5 cut(s)	197, 314, 476, 1042, 1279
AcuI	CTGAAG	4 cut(s)	393, 843, 1002, 1383
AfaI	GTAC	4 cut(s)	516, 1197, 1476, 1481
AfiI	CCNNNNNNNGG	2 cut(s)	57, 1403
AgeI	ACCGGT	1 cut(s)	1592
AgsI	TTSAA	8 cut(s)	293, 482, 559, 611, 845, 1309, 1456, 1467
AhlI	ACTAGT	1 cut(s)	881
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AluBI	AGCT	4 cut(s)	448, 848, 1393, 1577
AluI	AGCT	4 cut(s)	448, 848, 1393, 1577
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	2 cut(s)	651, 874
AlwNI	CAGNNNCTG	1 cut(s)	1430
Aor13HI	TCCGGA	1 cut(s)	1442
ApeKI	GCWGC	1 cut(s)	1146
ApoI	RAATTY	5 cut(s)	197, 314, 476, 1042, 1279
AsiGI	ACCGGT	1 cut(s)	1592
AsuHPI	GGTGA	7 cut(s)	155, 484, 584, 1153, 1388, 1582, 1634
BaeGI	GKGCMC	1 cut(s)	1544
BaeI	ACNNNNGTAYC	2 cut(s)	1254, 1287
BauI	CACGAG	1 cut(s)	1696
BbsI	GAAGAC	3 cut(s)	251, 831, 1164
BbvI	GCAGC	1 cut(s)	1158
BccI	CCATC	3 cut(s)	85, 347, 1682
BciVI	GTATCC	2 cut(s)	1282, 1526
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	686
BcuI	ACTAGT	1 cut(s)	881
BfaI	CTAG	6 cut(s)	518, 618, 707, 849, 882, 999
BfmI	CTRYAG	1 cut(s)	1422
BfuI	GTATCC	2 cut(s)	1282, 1526
BisI	GCNGC	3 cut(s)	35, 298, 1147
BlsI	GCNGC	3 cut(s)	36, 299, 1148
BmiI	GGNNCC	1 cut(s)	1191
BpiI	GAAGAC	3 cut(s)	251, 831, 1164
BpmI	CTGGAG	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	1215
BsaWI	WCCGGW	3 cut(s)	80, 1442, 1592
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 1403
Bse118I	RCCGGY	1 cut(s)	1592
Bse1I	ACTGG	5 cut(s)	781, 839, 1193, 1343, 1695
Bse3DI	GCAATG	3 cut(s)	342, 750, 1407
Bse8I	GATNNNNATC	1 cut(s)	525
BseAI	TCCGGA	1 cut(s)	1442
BseDI	CCNNGG	1 cut(s)	1215
BseGI	GGATG	8 cut(s)	77, 328, 388, 421, 511, 727, 1439, 1440
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	57, 1403
BseMI	GCAATG	3 cut(s)	342, 750, 1407
BseMII	CTCAG	2 cut(s)	102, 1026
BseNI	ACTGG	5 cut(s)	781, 839, 1193, 1343, 1695
BseRI	GAGGAG	2 cut(s)	692, 795
BseSI	GKGCMC	1 cut(s)	1544
BseXI	GCAGC	1 cut(s)	1158
BshTI	ACCGGT	1 cut(s)	1592
BsiSI	CCGG	3 cut(s)	81, 1443, 1593
BslI	CCNNNNNNNGG	2 cut(s)	57, 1403
BsmAI	GTCTC	1 cut(s)	686
BsmI	GAATGC	2 cut(s)	1036, 1462
Bsp1286I	GDGCHC	1 cut(s)	1544
Bsp13I	TCCGGA	1 cut(s)	1442
Bsp143I	GATC	5 cut(s)	117, 586, 643, 866, 1633
BspACI	CCGC	7 cut(s)	32, 35, 51, 297, 347, 380, 1293
BspCNI	CTCAG	2 cut(s)	103, 1027
BspEI	TCCGGA	1 cut(s)	1442
BspHI	TCATGA	2 cut(s)	120, 1414
BspLI	GGNNCC	1 cut(s)	1191
BspPI	GGATC	2 cut(s)	651, 874
BsrDI	GCAATG	3 cut(s)	342, 750, 1407
BsrFI	RCCGGY	1 cut(s)	1592
BsrI	ACTGG	5 cut(s)	781, 839, 1193, 1343, 1695
BssAI	RCCGGY	1 cut(s)	1592
BssECI	CCNNGG	1 cut(s)	1215
BssMI	GATC	5 cut(s)	117, 586, 643, 866, 1633
BssSI	CACGAG	1 cut(s)	1696
BssT1I	CCWWGG	1 cut(s)	1215
Bst2BI	CACGAG	1 cut(s)	1696
Bst4CI	ACNGT	3 cut(s)	976, 1267, 1479
Bst6I	CTCTTC	3 cut(s)	627, 684, 1592
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	106, 1291, 1295
BstDEI	CTNAG	2 cut(s)	111, 1035
BstEII	GGTNACC	1 cut(s)	1622
BstF5I	GGATG	8 cut(s)	77, 328, 388, 421, 511, 727, 1439, 1440
BstKTI	GATC	5 cut(s)	120, 589, 646, 869, 1636
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	5 cut(s)	117, 586, 643, 866, 1633
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 344, 740, 854, 965
BstNSI	RCATGY	2 cut(s)	821, 1560
BstPI	GGTNACC	1 cut(s)	1622
BstSFI	CTRYAG	1 cut(s)	1422
BstSLI	GKGCMC	1 cut(s)	1544
BstV1I	GCAGC	1 cut(s)	1158
BstV2I	GAAGAC	3 cut(s)	251, 831, 1164
BsuI	GTATCC	2 cut(s)	1282, 1526
BtsCI	GGATG	8 cut(s)	77, 328, 388, 421, 511, 727, 1439, 1440
BtsIMutI	CAGTG	3 cut(s)	108, 602, 1234
Cac8I	GCNNGC	3 cut(s)	106, 1291, 1295
CaiI	CAGNNNCTG	1 cut(s)	1430
CciI	TCATGA	2 cut(s)	120, 1414
Cfr10I	RCCGGY	1 cut(s)	1592
Csp6I	GTAC	4 cut(s)	515, 1196, 1475, 1480
CspAI	ACCGGT	1 cut(s)	1592
CviAII	CATG	7 cut(s)	121, 231, 818, 1415, 1550, 1557, 1669
CviJI	RGCY	8 cut(s)	448, 848, 1060, 1171, 1297, 1393, 1490, 1577
CviKI_1	RGCY	8 cut(s)	448, 848, 1060, 1171, 1297, 1393, 1490, 1577
CviQI	GTAC	4 cut(s)	515, 1196, 1475, 1480
DdeI	CTNAG	2 cut(s)	111, 1035
DpnI	GATC	5 cut(s)	119, 588, 645, 868, 1635
DpnII	GATC	5 cut(s)	117, 586, 643, 866, 1633
DraI	TTTAAA	1 cut(s)	501
Eam1104I	CTCTTC	3 cut(s)	627, 684, 1592
EarI	CTCTTC	3 cut(s)	627, 684, 1592
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	1215
Eco32I	GATATC	2 cut(s)	407, 1614
Eco57I	CTGAAG	4 cut(s)	393, 843, 1002, 1383
Eco91I	GGTNACC	1 cut(s)	1622
EcoO65I	GGTNACC	1 cut(s)	1622
EcoRI	GAATTC	1 cut(s)	197
EcoRV	GATATC	2 cut(s)	407, 1614
EcoT14I	CCWWGG	1 cut(s)	1215
EcoT22I	ATGCAT	1 cut(s)	1562
ErhI	CCWWGG	1 cut(s)	1215
FaeI	CATG	7 cut(s)	124, 234, 821, 1418, 1553, 1560, 1672
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FatI	CATG	7 cut(s)	120, 230, 817, 1414, 1549, 1556, 1668
FauI	CCCGC	1 cut(s)	1286
FauNDI	CATATG	1 cut(s)	1285
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	2 cut(s)	428, 534
Fnu4HI	GCNGC	3 cut(s)	35, 298, 1147
FokI	GGATG	8 cut(s)	64, 335, 395, 428, 518, 734, 1426, 1447
Fsp4HI	GCNGC	3 cut(s)	35, 298, 1147
FspBI	CTAG	6 cut(s)	518, 618, 707, 849, 882, 999
GluI	GCNGC	3 cut(s)	35, 298, 1147
GsuI	CTGGAG	1 cut(s)	798
HapII	CCGG	3 cut(s)	81, 1443, 1593
Hin1II	CATG	7 cut(s)	124, 234, 821, 1418, 1553, 1560, 1672
HincII	GTYRAC	2 cut(s)	535, 1084
HindII	GTYRAC	2 cut(s)	535, 1084
HinfI	GANTC	8 cut(s)	353, 425, 509, 526, 939, 1418, 1427, 1694
HpaI	GTTAAC	1 cut(s)	1084
HpaII	CCGG	3 cut(s)	81, 1443, 1593
HphI	GGTGA	7 cut(s)	155, 484, 584, 1153, 1388, 1582, 1634
Hpy166II	GTNNAC	5 cut(s)	146, 429, 535, 815, 1084
Hpy188I	TCNGA	9 cut(s)	163, 916, 982, 1021, 1184, 1363, 1532, 1608, 1682
Hpy188III	TCNNGA	8 cut(s)	121, 410, 647, 1415, 1443, 1631, 1637, 1698
Hpy8I	GTNNAC	5 cut(s)	146, 429, 535, 815, 1084
Hpy99I	CGWCG	2 cut(s)	539, 1612
HpyCH4III	ACNGT	3 cut(s)	976, 1267, 1479
HpyCH4IV	ACGT	3 cut(s)	176, 1233, 1458
HpyCH4V	TGCA	8 cut(s)	108, 743, 934, 968, 1289, 1462, 1553, 1560
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 344, 740, 854, 965
HpyF3I	CTNAG	2 cut(s)	111, 1035
HpySE526I	ACGT	3 cut(s)	176, 1233, 1458
Hsp92II	CATG	7 cut(s)	124, 234, 821, 1418, 1553, 1560, 1672
Kpn2I	TCCGGA	1 cut(s)	1442
Ksp22I	TGATCA	1 cut(s)	586
KspAI	GTTAAC	1 cut(s)	1084
Kzo9I	GATC	5 cut(s)	117, 586, 643, 866, 1633
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	1 cut(s)	1158
LweI	GCATC	4 cut(s)	325, 367, 955, 1233
MaeI	CTAG	6 cut(s)	518, 618, 707, 849, 882, 999
MaeII	ACGT	3 cut(s)	176, 1233, 1458
MaeIII	GTNAC	5 cut(s)	367, 613, 1229, 1384, 1622
MalI	GATC	5 cut(s)	119, 588, 645, 868, 1635
MboI	GATC	5 cut(s)	117, 586, 643, 866, 1633
MfeI	CAATTG	2 cut(s)	21, 54
MhlI	GDGCHC	1 cut(s)	1544
MlyI	GAGTC	2 cut(s)	434, 1688
MmeI	TCCRAC	2 cut(s)	1510, 1631
Mph1103I	ATGCAT	1 cut(s)	1562
MroI	TCCGGA	1 cut(s)	1442
MseI	TTAA	6 cut(s)	179, 500, 1083, 1251, 1647, 1686
MslI	CAYNNNNRTG	1 cut(s)	1467
MspI	CCGG	3 cut(s)	81, 1443, 1593
MunI	CAATTG	2 cut(s)	21, 54
Mva1269I	GAATGC	2 cut(s)	1036, 1462
MwoI	GCNNNNNNNGC	5 cut(s)	101, 344, 740, 854, 965
NdeI	CATATG	1 cut(s)	1285
NdeII	GATC	5 cut(s)	117, 586, 643, 866, 1633
NlaIII	CATG	7 cut(s)	124, 234, 821, 1418, 1553, 1560, 1672
NlaIV	GGNNCC	1 cut(s)	1191
NmuCI	GTSAC	3 cut(s)	613, 1229, 1622
NsiI	ATGCAT	1 cut(s)	1562
NspI	RCATGY	2 cut(s)	821, 1560
PagI	TCATGA	2 cut(s)	120, 1414
PcsI	WCGNNNNNNNCGW	3 cut(s)	182, 198, 875
PctI	GAATGC	2 cut(s)	1036, 1462
PfeI	GAWTC	6 cut(s)	353, 509, 526, 939, 1418, 1427
PinAI	ACCGGT	1 cut(s)	1592
PkrI	GCNGC	3 cut(s)	36, 299, 1148
PleI	GAGTC	2 cut(s)	433, 1688
PpsI	GAGTC	2 cut(s)	433, 1688
Psp1406I	AACGTT	1 cut(s)	176
PspEI	GGTNACC	1 cut(s)	1622
PspN4I	GGNNCC	1 cut(s)	1191
PstNI	CAGNNNCTG	1 cut(s)	1430
RsaI	GTAC	4 cut(s)	516, 1197, 1476, 1481
RsaNI	GTAC	4 cut(s)	515, 1196, 1475, 1480
RseI	CAYNNNNRTG	1 cut(s)	1467
SalI	GTCGAC	1 cut(s)	533
SaqAI	TTAA	6 cut(s)	179, 500, 1083, 1251, 1647, 1686
SatI	GCNGC	3 cut(s)	35, 298, 1147
Sau3AI	GATC	5 cut(s)	117, 586, 643, 866, 1633
SchI	GAGTC	2 cut(s)	434, 1688
SduI	GDGCHC	1 cut(s)	1544
SfaNI	GCATC	4 cut(s)	325, 367, 955, 1233
SfcI	CTRYAG	1 cut(s)	1422
SgrAI	CRCCGGYG	1 cut(s)	1592
SmiMI	CAYNNNNRTG	1 cut(s)	1467
SpeI	ACTAGT	1 cut(s)	881
SsiI	CCGC	7 cut(s)	32, 35, 51, 297, 347, 380, 1293
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	6 cut(s)	518, 618, 707, 849, 882, 999
StyI	CCWWGG	1 cut(s)	1215
TaaI	ACNGT	3 cut(s)	976, 1267, 1479
TaiI	ACGT	3 cut(s)	179, 1236, 1461
TaqI	TCGA	6 cut(s)	185, 201, 255, 534, 630, 1638
TatI	WGTACW	2 cut(s)	514, 1195
TauI	GCSGC	2 cut(s)	37, 300
TfiI	GAWTC	6 cut(s)	353, 509, 526, 939, 1418, 1427
Tru1I	TTAA	6 cut(s)	179, 500, 1083, 1251, 1647, 1686
Tru9I	TTAA	6 cut(s)	179, 500, 1083, 1251, 1647, 1686
TscAI	CASTG	3 cut(s)	115, 609, 1234
TseFI	GTSAC	3 cut(s)	613, 1229, 1622
TseI	GCWGC	1 cut(s)	1146
Tsp45I	GTSAC	3 cut(s)	613, 1229, 1622
TspRI	CASTG	3 cut(s)	115, 609, 1234
XapI	RAATTY	5 cut(s)	197, 314, 476, 1042, 1279
XceI	RCATGY	2 cut(s)	821, 1560
XmiI	GTMKAC	2 cut(s)	428, 534
XspI	CTAG	6 cut(s)	518, 618, 707, 849, 882, 999
Zsp2I	ATGCAT	1 cut(s)	1562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.