Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007080

Physical Location & Seq

Genomic Coordinates Reverse (-)

30341059 .. 30344478

Gene Structure 3420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G358500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGGGAGACCCGAGTGAGGAGGCGGCGGAGATTGAAGACAACTGGGCTGAAGCTAACAGTGACAGGGTGAGTTGGATCATGAACAAGGGATTGGGACTTGGAAAAATAATTCTGGTCACTGCTATTGTAATTTCTTCTGCACCATTGGTTCTTCCACCGCTTGTGGTTATTTCAGCAATTGGCTTTGCCTTTTGTGTTCCGTGTGCCGTTGTCTTGGCAAGTTATGCTTGCACTAAGAAGCTCATGAGTAAGTTGCTTCCTTATAGTACACCTCCTCTTTTGTTGGAAAATGGCACATTAATGTCAAATGATGATGAAGAAGAAGAAGAGCAGGGTGAGGAACAGGGAGGAAAGATTGATACCGAAAAGGAGGAAGGATGGGATAGTGGGGGTATACTAGGAGGAGGCAAGATGAGAATCGAATTAGTAGAGGAGGAAAATGATGAAATTTTTGAGGAAGGGAGAATTGAGGAGGGGGATGAGTGTGTGCAAGAGGGTGTTAAGAAGAATGCACAAGAATATTTTGCTGAAGACGAAAATAGATATGAGGAGGATGTTGGTGAGTCTACGGATGTGGAGGAAATGCTCATATTGGATAACATTAATGTGGTGAATATTGAAGGACTGATTCAGGATTATAAGGATGATACCTTGCTAGATGAGAATTCAGTCAGCGACATGTACAGATTGGTGTCGAATGTAGTTGAGGGTGCTGAGGAAATAGGACTGACACCAATTGAAGTGACTGCCATAGTAATGGATGAAAGTGGGGATCAAGAAACTGCAAGTAACACTGCAGAAGAGGAGGAGTTGGTGGAAGAGACAAGGGAATTTCTAGAAAAAATTAGGGATGAAGGCAATGCTGATAATGCAATGGATTTGGAAAAGCAGTATACAGGAGAAGTTGAAGGGGGTAAGGAGGTAAGAGATCAACAATTTGATTGGAATGCGGAAGAGAGAGAGATACTAGTTGAAGATAAAATTTCAGATATTAGATTAGAAAAACCTACTGGTACCATGGACGGCGGAGTAGGCAGAGTTCCGAAAGAGTGTGAAGATATGCAAGAACGCCAAGAAATGAAACATGTGAACGATGCAAACACTACTACTGTTTCTGGGCATGTCAAACCAACTGGAGATATAGGGAGTGTTTTGGAAAGCAAGAATGCTGACAATAATTCAAAGGCAGAGAAGCCCATAGGGGAAGCCAATGATGTTGGCAACACTTTAGAGGCAGAAACGAGAAATTTGAGGCCTGTGATGAGCAGCATCGTGGAAGACAAGCAAAAGCCTGTGATAAGCAAGGAGGAAATAGTACTACAAGGAGGGAGAGCAGAGGATAATGTCAATAACTTAGATTTTCAGTTGATCAGAGAGAAGGAAACTGTGGTTTCCTCAAATGTAGATGCAGGAGAGATTGCTGATGAAAGTGGGCTTCATTTGTTCGATGAGAAGAATGTATCTGGTCAGCAATATAATTCTTATGAAACTTCTGAAGGTCATGGGGGTGATGAAGGTGCGGATTTCGCAGAGCTTCCTGTTTCACACAGGGCACATGAATCTACAGATGCCGTGATATCTTCTGGAAAGGACGTCAGCATGCATCCAAACGGGGTACCGTACGATGAGGCGAAAATATGGAGACAGATTGATGCTATGCGAAGAATAGTAGGATACAAAGCCACACCCCATGCAACATGCATAGAGGAACTCAAGGCTCTTTACCTCTTCACTGGTGTGGAACTTCCTGCATCATTTGGTGACCATCCTGATCTTGCACAAGTCAATGACAAACTTCGGTTTCTCATGTCCATAATTGGAGTTAAACTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

612

Amino Acids

67.32

Weight (kDa)

4.24

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65090 AT1G65090 AT1G65090 AT5G36100 AT5G36100
fragaria_vesca	FvH4_6g00830 FvH4_6g00830
malus_domestica	MD04G1241000.v1.1 MD12G1258000.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1 Prupe.6G358500_v2.0.a1 Prupe.6G358500_v2.0.a1
pyrus_communis	pycom04g21270 pycom12g23660
rosa_chinensis	RchiOBHm_Chr3g0448301
rosa_laevigata	RLG00000025929
rosa_multiflora	Rmu_co8397881.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426450
rosa_rugosa	Rorug02G0610100
rosa_samantha	Rh3AG009800 Rh3BG009300 Rh3BG009400 Rh3CG009300 Rh3DG010000
rosa_wichuraiana	Rw3G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	639
AatII	GACGTC	1 cut(s)	1596
Acc65I	GGTACC	2 cut(s)	1013, 1615
AccB1I	GGYRCC	2 cut(s)	1013, 1615
AccI	GTMKAC	3 cut(s)	394, 566, 893
AciI	CCGC	6 cut(s)	23, 26, 158, 950, 1026, 1520
AclWI	GGATC	2 cut(s)	83, 780
AcsI	RAATTY	5 cut(s)	447, 664, 830, 981, 1246
AcuI	CTGAAG	3 cut(s)	69, 549, 1515
AcyI	GRCGYC	1 cut(s)	1593
AfaI	GTAC	6 cut(s)	268, 683, 1015, 1317, 1617, 1622
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	2 cut(s)	678, 1084
AgsI	TTSAA	6 cut(s)	35, 620, 740, 908, 974, 1182
AhlI	ACTAGT	1 cut(s)	967
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AleI	CACNNNNGTG	1 cut(s)	1736
AluBI	AGCT	3 cut(s)	53, 241, 1534
AluI	AGCT	3 cut(s)	53, 241, 1534
Alw26I	GTCTC	2 cut(s)	815, 1636
AlwI	GGATC	2 cut(s)	83, 780
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	1 cut(s)	1253
ApeKI	GCWGC	1 cut(s)	1266
ApoI	RAATTY	5 cut(s)	447, 664, 830, 981, 1246
AseI	ATTAAT	2 cut(s)	299, 603
Asp718I	GGTACC	2 cut(s)	1013, 1615
AsuHPI	GGTGA	6 cut(s)	79, 347, 572, 622, 1520, 1772
AvaI	CYCGRG	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	1555
BanI	GGYRCC	2 cut(s)	1013, 1615
BbsI	GAAGAC	3 cut(s)	42, 537, 1284
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	1278
BccI	CCATC	2 cut(s)	372, 1773
BceAI	ACGGC	3 cut(s)	191, 1039, 1556
BciVI	GTATCC	1 cut(s)	1667
BclI	TGATCA	1 cut(s)	1368
BcoDI	GTCTC	2 cut(s)	815, 1636
BcuI	ACTAGT	1 cut(s)	967
BfaI	CTAG	5 cut(s)	398, 656, 836, 968, 1829
BfmI	CTRYAG	2 cut(s)	795, 1563
BfuI	GTATCC	1 cut(s)	1667
BisI	GCNGC	2 cut(s)	24, 1267
BlsI	GCNGC	2 cut(s)	25, 1268
BmcAI	AGTACT	1 cut(s)	1317
BmeT110I	CYCGRG	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	1015, 1617
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	7 cut(s)	1084, 1278, 1396, 1558, 1612, 1642, 1760
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	3 cut(s)	42, 537, 1284
BpmI	CTGGAG	1 cut(s)	1155
Bpu10I	CCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	1697
BsaBI	GATNNNNATC	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	1593
BsaJI	CCNNGG	1 cut(s)	1017
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	4 cut(s)	47, 1015, 1138, 1738
Bse3DI	GCAATG	2 cut(s)	865, 879
Bse8I	GATNNNNATC	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	1017
BseGI	GGATG	9 cut(s)	383, 484, 559, 577, 649, 766, 856, 1603, 1765
BseJI	GATNNNNATC	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	2 cut(s)	865, 879
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	4 cut(s)	47, 1015, 1138, 1738
BseRI	GAGGAG	8 cut(s)	32, 264, 417, 446, 485, 563, 818, 821
BseSI	GKGCMC	1 cut(s)	1555
BseXI	GCAGC	1 cut(s)	1278
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	1255
BshNI	GGYRCC	2 cut(s)	1013, 1615
BsiHKCI	CYCGRG	1 cut(s)	10
BsiWI	CGTACG	1 cut(s)	1620
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	815, 1636
BsmFI	GGGAC	1 cut(s)	108
BsmI	GAATGC	3 cut(s)	514, 952, 1171
BsnI	GGCC	1 cut(s)	1255
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	1555
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	5 cut(s)	75, 772, 928, 1368, 1771
Bsp19I	CCATGG	1 cut(s)	1017
BspACI	CCGC	6 cut(s)	23, 26, 158, 950, 1026, 1520
BspANI	GGCC	1 cut(s)	1255
BspCNI	CTCAG	1 cut(s)	706
BspHI	TCATGA	2 cut(s)	78, 243
BspLI	GGNNCC	2 cut(s)	1015, 1617
BspMAI	CTGCAG	1 cut(s)	799
BspPI	GGATC	2 cut(s)	83, 780
BspQI	GCTCTTC	1 cut(s)	321
BspT107I	GGYRCC	2 cut(s)	1013, 1615
BsrDI	GCAATG	2 cut(s)	865, 879
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	4 cut(s)	47, 1015, 1138, 1738
BssECI	CCNNGG	1 cut(s)	1017
BssMI	GATC	5 cut(s)	75, 772, 928, 1368, 1771
BssNAI	GTATAC	2 cut(s)	395, 894
BssNI	GRCGYC	1 cut(s)	1593
BssT1I	CCWWGG	1 cut(s)	1017
Bst1107I	GTATAC	2 cut(s)	395, 894
Bst4CI	ACNGT	4 cut(s)	59, 1111, 1387, 1620
Bst6I	CTCTTC	5 cut(s)	321, 795, 813, 948, 1733
BstACI	GRCGYC	1 cut(s)	1593
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstAUI	TGTACA	1 cut(s)	681
BstC8I	GCNNGC	2 cut(s)	229, 1601
BstDEI	CTNAG	3 cut(s)	234, 714, 1354
BstDSI	CCRYGG	1 cut(s)	1017
BstEII	GGTNACC	1 cut(s)	1760
BstF5I	GGATG	9 cut(s)	383, 484, 559, 577, 649, 766, 856, 1603, 1765
BstKTI	GATC	5 cut(s)	78, 775, 931, 1371, 1774
BstMAI	GTCTC	2 cut(s)	815, 1636
BstMBI	GATC	5 cut(s)	75, 772, 928, 1368, 1771
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 869, 1032, 1526
BstNSI	RCATGY	5 cut(s)	682, 1088, 1124, 1603, 1701
BstPI	GGTNACC	1 cut(s)	1760
BstSFI	CTRYAG	2 cut(s)	795, 1563
BstSLI	GKGCMC	1 cut(s)	1555
BstV1I	GCAGC	1 cut(s)	1278
BstV2I	GAAGAC	3 cut(s)	42, 537, 1284
BstXI	CCANNNNNNTGG	1 cut(s)	757
BstZ17I	GTATAC	2 cut(s)	395, 894
BsuI	GTATCC	1 cut(s)	1667
BsuRI	GGCC	1 cut(s)	1255
BtgI	CCRYGG	1 cut(s)	1017
BtsCI	GGATG	9 cut(s)	383, 484, 559, 577, 649, 766, 856, 1603, 1765
BtsI	GCAGTG	2 cut(s)	117, 792
BtsIMutI	CAGTG	4 cut(s)	64, 117, 792, 1731
Cac8I	GCNNGC	2 cut(s)	229, 1601
CciI	TCATGA	2 cut(s)	78, 243
Csp6I	GTAC	6 cut(s)	267, 682, 1014, 1316, 1616, 1621
CviQI	GTAC	6 cut(s)	267, 682, 1014, 1316, 1616, 1621
DdeI	CTNAG	3 cut(s)	234, 714, 1354
DpnI	GATC	5 cut(s)	77, 774, 930, 1370, 1773
DpnII	GATC	5 cut(s)	75, 772, 928, 1368, 1771
Eam1104I	CTCTTC	5 cut(s)	321, 795, 813, 948, 1733
EarI	CTCTTC	5 cut(s)	321, 795, 813, 948, 1733
EciI	GGCGGA	2 cut(s)	41, 1041
Eco130I	CCWWGG	1 cut(s)	1017
Eco147I	AGGCCT	1 cut(s)	1255
Eco32I	GATATC	1 cut(s)	1578
Eco57I	CTGAAG	3 cut(s)	69, 549, 1515
Eco88I	CYCGRG	1 cut(s)	10
Eco91I	GGTNACC	1 cut(s)	1760
EcoO65I	GGTNACC	1 cut(s)	1760
EcoRI	GAATTC	1 cut(s)	664
EcoRV	GATATC	1 cut(s)	1578
EcoT14I	CCWWGG	1 cut(s)	1017
EcoT22I	ATGCAT	2 cut(s)	1605, 1703
ErhI	CCWWGG	1 cut(s)	1017
FalI	AAGNNNNNCTT	2 cut(s)	211, 243
FaqI	GGGAC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	1368
FblI	GTMKAC	3 cut(s)	394, 566, 893
Fnu4HI	GCNGC	2 cut(s)	24, 1267
FokI	GGATG	9 cut(s)	390, 491, 566, 584, 656, 773, 863, 1590, 1752
Fsp4HI	GCNGC	2 cut(s)	24, 1267
FspBI	CTAG	5 cut(s)	398, 656, 836, 968, 1829
GluI	GCNGC	2 cut(s)	24, 1267
GsuI	CTGGAG	1 cut(s)	1155
HaeIII	GGCC	1 cut(s)	1255
Hin1I	GRCGYC	1 cut(s)	1593
HinfI	GANTC	4 cut(s)	417, 563, 628, 1559
HphI	GGTGA	6 cut(s)	79, 347, 572, 622, 1520, 1772
Hpy166II	GTNNAC	5 cut(s)	269, 395, 567, 894, 1090
Hpy188I	TCNGA	4 cut(s)	988, 1044, 1373, 1495
Hpy188III	TCNNGA	7 cut(s)	79, 244, 632, 776, 836, 1584, 1769
Hpy8I	GTNNAC	5 cut(s)	269, 395, 567, 894, 1090
HpyAV	CCTTC	8 cut(s)	368, 452, 614, 848, 902, 1372, 1490, 1508
HpyCH4III	ACNGT	4 cut(s)	59, 1111, 1387, 1620
HpyCH4IV	ACGT	1 cut(s)	1593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 869, 1032, 1526
HpyF3I	CTNAG	3 cut(s)	234, 714, 1354
HpySE526I	ACGT	1 cut(s)	1593
Hsp92I	GRCGYC	1 cut(s)	1593
KpnI	GGTACC	2 cut(s)	1017, 1619
Ksp22I	TGATCA	1 cut(s)	1368
Kzo9I	GATC	5 cut(s)	75, 772, 928, 1368, 1771
LguI	GCTCTTC	1 cut(s)	321
Lsp1109I	GCAGC	1 cut(s)	1278
LweI	GCATC	7 cut(s)	1084, 1278, 1396, 1558, 1612, 1642, 1760
MaeI	CTAG	5 cut(s)	398, 656, 836, 968, 1829
MaeII	ACGT	1 cut(s)	1593
MaeIII	GTNAC	5 cut(s)	59, 115, 742, 788, 1760
MalI	GATC	5 cut(s)	77, 774, 930, 1370, 1773
MboI	GATC	5 cut(s)	75, 772, 928, 1368, 1771
MfeI	CAATTG	2 cut(s)	177, 735
MhlI	GDGCHC	1 cut(s)	1555
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	2 cut(s)	53, 264
Mph1103I	ATGCAT	2 cut(s)	1605, 1703
MseI	TTAA	4 cut(s)	299, 501, 603, 1824
MslI	CAYNNNNRTG	5 cut(s)	299, 605, 755, 1506, 1736
MunI	CAATTG	2 cut(s)	177, 735
Mva1269I	GAATGC	3 cut(s)	514, 952, 1171
MwoI	GCNNNNNNNGC	4 cut(s)	224, 869, 1032, 1526
NcoI	CCATGG	1 cut(s)	1017
NdeII	GATC	5 cut(s)	75, 772, 928, 1368, 1771
NlaIV	GGNNCC	2 cut(s)	1015, 1617
NmuCI	GTSAC	4 cut(s)	59, 115, 742, 1760
NsiI	ATGCAT	2 cut(s)	1605, 1703
NspI	RCATGY	5 cut(s)	682, 1088, 1124, 1603, 1701
OliI	CACNNNNGTG	1 cut(s)	1736
PaeI	GCATGC	1 cut(s)	1603
PagI	TCATGA	2 cut(s)	78, 243
PceI	AGGCCT	1 cut(s)	1255
PciI	ACATGT	2 cut(s)	678, 1084
PciSI	GCTCTTC	1 cut(s)	321
PctI	GAATGC	3 cut(s)	514, 952, 1171
PfeI	GAWTC	3 cut(s)	417, 628, 1559
Pfl23II	CGTACG	1 cut(s)	1620
PkrI	GCNGC	2 cut(s)	25, 1268
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PscI	ACATGT	2 cut(s)	678, 1084
PshBI	ATTAAT	2 cut(s)	299, 603
PsiI	TTATAA	1 cut(s)	639
PspEI	GGTNACC	1 cut(s)	1760
PspLI	CGTACG	1 cut(s)	1620
PspN4I	GGNNCC	2 cut(s)	1015, 1617
PsrI	GAACNNNNNNTAC	2 cut(s)	1023, 1055
PstI	CTGCAG	1 cut(s)	799
RsaI	GTAC	6 cut(s)	268, 683, 1015, 1317, 1617, 1622
RsaNI	GTAC	6 cut(s)	267, 682, 1014, 1316, 1616, 1621
RseI	CAYNNNNRTG	5 cut(s)	299, 605, 755, 1506, 1736
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	4 cut(s)	299, 501, 603, 1824
SatI	GCNGC	2 cut(s)	24, 1267
Sau3AI	GATC	5 cut(s)	75, 772, 928, 1368, 1771
ScaI	AGTACT	1 cut(s)	1317
SchI	GAGTC	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	1555
SfaNI	GCATC	7 cut(s)	1084, 1278, 1396, 1558, 1612, 1642, 1760
SfcI	CTRYAG	2 cut(s)	795, 1563
SmiMI	CAYNNNNRTG	5 cut(s)	299, 605, 755, 1506, 1736
SmlI	CTYRAG	1 cut(s)	1712
SmoI	CTYRAG	1 cut(s)	1712
SpeI	ACTAGT	1 cut(s)	967
SphI	GCATGC	1 cut(s)	1603
SseBI	AGGCCT	1 cut(s)	1255
SsiI	CCGC	6 cut(s)	23, 26, 158, 950, 1026, 1520
SspI	AATATT	2 cut(s)	521, 616
SspMI	CTAG	5 cut(s)	398, 656, 836, 968, 1829
StuI	AGGCCT	1 cut(s)	1255
StyI	CCWWGG	1 cut(s)	1017
TaaI	ACNGT	4 cut(s)	59, 1111, 1387, 1620
TaiI	ACGT	1 cut(s)	1596
TaqI	TCGA	3 cut(s)	420, 695, 1446
TatI	WGTACW	3 cut(s)	266, 681, 1315
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	3 cut(s)	417, 628, 1559
Tru1I	TTAA	4 cut(s)	299, 501, 603, 1824
Tru9I	TTAA	4 cut(s)	299, 501, 603, 1824
TscAI	CASTG	4 cut(s)	64, 124, 799, 1738
TseFI	GTSAC	4 cut(s)	59, 115, 742, 1760
TseI	GCWGC	1 cut(s)	1266
Tsp45I	GTSAC	4 cut(s)	59, 115, 742, 1760
TspGWI	ACGGA	2 cut(s)	189, 584
TspRI	CASTG	4 cut(s)	64, 124, 799, 1738
VspI	ATTAAT	2 cut(s)	299, 603
XapI	RAATTY	5 cut(s)	447, 664, 830, 981, 1246
XbaI	TCTAGA	1 cut(s)	835
XceI	RCATGY	5 cut(s)	682, 1088, 1124, 1603, 1701
XmiI	GTMKAC	3 cut(s)	394, 566, 893
XspI	CTAG	5 cut(s)	398, 656, 836, 968, 1829
ZraI	GACGTC	1 cut(s)	1594
ZrmI	AGTACT	1 cut(s)	1317
Zsp2I	ATGCAT	2 cut(s)	1605, 1703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.