Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8397881.1

Orthogroup ID

OG0007080

Physical Location & Seq

Genomic Coordinates Forward (+)

91 .. 1257

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8397881.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atgggagatccaagtgggaagtgtgagattgaagaagatacttactgctttgatgagtcctctccccaagtagataataatactggtaaggcgagttggatattgaacaagggatgggggattgggaagaaacttttggtgactggtgccgtcatttcttctgcaccctttgttctcccaccacttgtggttacatcggcgatagcgtttgcctgttgggttccttccggggtcgtgttggcaagttatgcttgttctgagaagataatgagcaagttgctcccttataatagtagtagtagtagcaccacaggaggagtattaatgtcagataatgaggatgaagaagagtttgaggatgcggaagaaggtgtaagggtggatgttggtgagtatttggatgtggaggagaagccgatgttggatgggattaatggggtgataatggaagggtcgagatatgagtacaatgaggatgtcctgctagatgagaatgcaatcagtgatggggtggatgtcttggtgttcaatgtaaatgagggagaggaggagtttggagtgacgccaattgaagtgatcatgacaagtgtagtaccggaaggaagcgaaggtaaaaaaaaagtaggtgactttctggaagagggggaaatggtgaaagagacgaggggattgctagagaaaattagggatgaaggcaatgctggtgatggaatggaaatggacaatcaagatgtagatggaactgcaggatcaaggagggattccatgtatgtattgctagataacaatatagtcagtgatgaggtggacgtattcgtgtcgaatgtaatatttgagggggaggaggagatattaattgaagaaattgaggaaaaggaaatagtaaatgacttcatggaggatgaagaagtgatgaaagaaacaaagggattgctagaaaacatcagggatgcagctggcagtgctgataatgcagtggcaatggcagagctgtatgcaggagaaattgaacgaggtgaggaggagacagatgagataactagaagtcattttgaagagacagagagtacagttgacaacagagtcactgatgctgatgttggcttggagaaacctactcataccatggaagctgggttgccaaaagaaggtgaaaaaattgaagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

42.55

Weight (kDa)

4.05

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65090 AT1G65090 AT1G65090 AT5G36100 AT5G36100
fragaria_vesca	FvH4_6g00830 FvH4_6g00830
malus_domestica	MD04G1241000.v1.1 MD12G1258000.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1 Prupe.6G358500_v2.0.a1 Prupe.6G358500_v2.0.a1
pyrus_communis	pycom04g21270 pycom12g23660
rosa_chinensis	RchiOBHm_Chr3g0448301
rosa_laevigata	RLG00000025929
rosa_multiflora	Rmu_co8397881.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426450
rosa_rugosa	Rorug02G0610100
rosa_samantha	Rh3AG009800 Rh3BG009300 Rh3BG009400 Rh3CG009300 Rh3DG010000
rosa_wichuraiana	Rw3G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AasI	GACNNNNNNGTC	1 cut(s)	1082
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	2 cut(s)	2, 757
AcyI	GRCGYC	1 cut(s)	563
AfaI	GTAC	3 cut(s)	467, 594, 1069
AfiI	CCNNNNNNNGG	1 cut(s)	1148
AgsI	TTSAA	8 cut(s)	32, 106, 529, 572, 860, 1010, 1055, 1163
AjuI	GAANNNNNNNTTGG	4 cut(s)	119, 151, 404, 436
AluBI	AGCT	3 cut(s)	956, 991, 1133
AluI	AGCT	3 cut(s)	956, 991, 1133
Alw26I	GTCTC	3 cut(s)	653, 1019, 1052
AlwI	GGATC	2 cut(s)	2, 757
ApeKI	GCWGC	1 cut(s)	953
AseI	ATTAAT	3 cut(s)	323, 432, 854
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	8 cut(s)	151, 401, 451, 638, 664, 716, 1028, 1163
BanI	GGYRCC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	965
BccI	CCATC	5 cut(s)	108, 419, 500, 701, 731
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	652, 686
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	3 cut(s)	653, 1019, 1052
BfaI	CTAG	5 cut(s)	485, 674, 779, 935, 1041
BfmI	CTRYAG	1 cut(s)	744
BisI	GCNGC	1 cut(s)	954
BlsI	GCNGC	1 cut(s)	955
Bme1390I	CCNGG	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	148, 222
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	3 cut(s)	349, 940, 1081
BpuMI	CCSGG	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	228, 1125
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	1 cut(s)	1148
Bse1I	ACTGG	2 cut(s)	88, 148
Bse3DI	GCAATG	2 cut(s)	703, 987
BseDI	CCNNGG	2 cut(s)	228, 1125
BseLI	CCNNNNNNNGG	1 cut(s)	1148
BseMI	GCAATG	2 cut(s)	703, 987
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	88, 148
BseRI	GAGGAG	8 cut(s)	330, 422, 560, 563, 857, 860, 1034, 1037
BseXI	GCAGC	1 cut(s)	965
BseYI	CCCAGC	1 cut(s)	1133
BsgI	GTGCAG	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	228, 596
BslI	CCNNNNNNNGG	1 cut(s)	1148
BsmAI	GTCTC	3 cut(s)	653, 1019, 1052
BsmBI	CGTCTC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	499
Bsp143I	GATC	3 cut(s)	7, 576, 749
Bsp19I	CCATGG	1 cut(s)	1125
BspACI	CCGC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	2 cut(s)	148, 222
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	2 cut(s)	2, 757
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	2 cut(s)	703, 987
BsrI	ACTGG	2 cut(s)	88, 148
BssECI	CCNNGG	2 cut(s)	228, 1125
BssMI	GATC	3 cut(s)	7, 576, 749
BssNI	GRCGYC	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	1125
Bst4CI	ACNGT	1 cut(s)	1072
Bst6I	CTCTTC	3 cut(s)	342, 633, 1050
BstACI	GRCGYC	1 cut(s)	563
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	958
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	1125
BstKTI	GATC	3 cut(s)	10, 579, 752
BstMAI	GTCTC	3 cut(s)	653, 1019, 1052
BstMBI	GATC	3 cut(s)	7, 576, 749
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 962, 971
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	1 cut(s)	965
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	1125
BtsI	GCAGTG	2 cut(s)	967, 981
BtsIMutI	CAGTG	5 cut(s)	508, 802, 967, 981, 1086
Cac8I	GCNNGC	1 cut(s)	958
CciI	TCATGA	1 cut(s)	579
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	3 cut(s)	466, 593, 1068
CviAII	CATG	4 cut(s)	580, 766, 895, 1126
CviJI	RGCY	5 cut(s)	415, 956, 991, 1104, 1133
CviKI_1	RGCY	5 cut(s)	415, 956, 991, 1104, 1133
CviQI	GTAC	3 cut(s)	466, 593, 1068
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	3 cut(s)	9, 578, 751
DpnII	GATC	3 cut(s)	7, 576, 749
DrdI	GACNNNNNNGTC	1 cut(s)	1082
DseDI	GACNNNNNNGTC	1 cut(s)	1082
Eam1104I	CTCTTC	3 cut(s)	342, 633, 1050
EarI	CTCTTC	3 cut(s)	342, 633, 1050
Eco130I	CCWWGG	1 cut(s)	1125
EcoT14I	CCWWGG	1 cut(s)	1125
ErhI	CCWWGG	1 cut(s)	1125
Esp3I	CGTCTC	1 cut(s)	653
FaeI	CATG	4 cut(s)	583, 769, 898, 1129
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	4 cut(s)	579, 765, 894, 1125
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	1 cut(s)	954
Fsp4HI	GCNGC	1 cut(s)	954
FspBI	CTAG	5 cut(s)	485, 674, 779, 935, 1041
GluI	GCNGC	1 cut(s)	954
GsaI	CCCAGC	1 cut(s)	1137
HapII	CCGG	2 cut(s)	228, 596
HgaI	GACGC	1 cut(s)	571
Hin1I	GRCGYC	1 cut(s)	563
Hin1II	CATG	4 cut(s)	583, 769, 898, 1129
HincII	GTYRAC	1 cut(s)	1075
HindII	GTYRAC	1 cut(s)	1075
HinfI	GANTC	3 cut(s)	56, 761, 1083
HpaII	CCGG	2 cut(s)	228, 596
HphI	GGTGA	8 cut(s)	151, 401, 451, 638, 664, 716, 1028, 1163
Hpy166II	GTNNAC	2 cut(s)	808, 1075
Hpy188I	TCNGA	2 cut(s)	259, 331
Hpy188III	TCNNGA	4 cut(s)	456, 580, 635, 728
Hpy8I	GTNNAC	2 cut(s)	808, 1075
HpyAV	CCTTC	7 cut(s)	234, 362, 443, 593, 602, 686, 1142
HpyCH4III	ACNGT	1 cut(s)	1072
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	6 cut(s)	164, 497, 746, 953, 974, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 962, 971
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	810
Hsp92I	GRCGYC	1 cut(s)	563
Hsp92II	CATG	4 cut(s)	583, 769, 898, 1129
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	7, 576, 749
LmnI	GCTCC	1 cut(s)	285
Lsp1109I	GCAGC	1 cut(s)	965
LweI	GCATC	3 cut(s)	349, 940, 1081
MaeI	CTAG	5 cut(s)	485, 674, 779, 935, 1041
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	5 cut(s)	139, 190, 559, 626, 1084
MalI	GATC	3 cut(s)	9, 578, 751
MboI	GATC	3 cut(s)	7, 576, 749
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	6 cut(s)	567, 681, 855, 864, 1005, 1158
MlyI	GAGTC	2 cut(s)	65, 1092
MmeI	TCCRAC	2 cut(s)	77, 402
MseI	TTAA	3 cut(s)	323, 432, 854
MspA1I	CMGCKG	1 cut(s)	956
MspI	CCGG	2 cut(s)	228, 596
MspR9I	CCNGG	1 cut(s)	229
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	499
MwoI	GCNNNNNNNGC	3 cut(s)	248, 962, 971
NciI	CCSGG	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	1125
NdeII	GATC	3 cut(s)	7, 576, 749
NlaIII	CATG	4 cut(s)	583, 769, 898, 1129
NlaIV	GGNNCC	2 cut(s)	148, 222
NmuCI	GTSAC	4 cut(s)	139, 559, 626, 1084
PagI	TCATGA	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	761
PkrI	GCNGC	1 cut(s)	955
PleI	GAGTC	2 cut(s)	64, 1091
PpsI	GAGTC	2 cut(s)	64, 1091
PshBI	ATTAAT	3 cut(s)	323, 432, 854
PsiI	TTATAA	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	1133
PspN4I	GGNNCC	2 cut(s)	148, 222
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	3 cut(s)	467, 594, 1069
RsaNI	GTAC	3 cut(s)	466, 593, 1068
SaqAI	TTAA	3 cut(s)	323, 432, 854
SatI	GCNGC	1 cut(s)	954
Sau3AI	GATC	3 cut(s)	7, 576, 749
SchI	GAGTC	2 cut(s)	65, 1092
ScrFI	CCNGG	1 cut(s)	229
SfaNI	GCATC	3 cut(s)	349, 940, 1081
SfcI	CTRYAG	1 cut(s)	744
Sse9I	AATT	6 cut(s)	567, 681, 855, 864, 1005, 1158
SsiI	CCGC	1 cut(s)	362
SspI	AATATT	1 cut(s)	831
SspMI	CTAG	5 cut(s)	485, 674, 779, 935, 1041
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	1125
TaaI	ACNGT	1 cut(s)	1072
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	2 cut(s)	455, 821
TasI	AATT	6 cut(s)	567, 681, 855, 864, 1005, 1158
TatI	WGTACW	2 cut(s)	465, 1067
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	3 cut(s)	323, 432, 854
Tru9I	TTAA	3 cut(s)	323, 432, 854
TscAI	CASTG	5 cut(s)	508, 802, 967, 981, 1093
TseFI	GTSAC	4 cut(s)	139, 559, 626, 1084
TseI	GCWGC	1 cut(s)	953
Tsp45I	GTSAC	4 cut(s)	139, 559, 626, 1084
TspDTI	ATGAA	5 cut(s)	357, 705, 883, 918, 929
TspRI	CASTG	5 cut(s)	508, 802, 967, 981, 1093
VspI	ATTAAT	3 cut(s)	323, 432, 854
XspI	CTAG	5 cut(s)	485, 674, 779, 935, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.