Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010011

Physical Location & Seq

Genomic Coordinates Reverse (-)

24652741 .. 24653998

Gene Structure 1258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCTCCCATTTGCCAACTACTACATTTCTTCACCATCCGTCTCGGAGAAGAATGCTATCAACAACAACGTAAACAAGAGGAGGAAGAAGAAACGGGCGATGATGGTTTATGGTGGAGGAGGAGGAGGAGATGATTTAGCGGTGGTGAAGGCGGCGGCGTGGGCTTGGTACTTACGGAAAGAAGGCAAACCGATTATGAGAGAGTTTGATGTAACGAGAGCACAAAGAATACCTCGACCTTCACGGTACAAGATCGAAGCCACGAAGAACATGATCCTCTCTGAGAATAGGGTTTTGGCCGAGAATAGGGTTTCTTCTACTAAGTCTCCGCTTTGGTACACGAATTATCAATTTCGTGGGGATCAAGAAACGTATTACTCTCGTCTTCTTGATACTTACGAAACCAAGAACATCTCCAAGAGGCTTAACATTGATGATTCTAGTTTCTCCACGAGTTTAAGTAGTGTTTTGAAGCACAACGGCGATGATCATCATAATCATAATCGTAATGATGATTATGGTTTTGATGATCATGGTTTGTTGAAGAAGAGAAATGGTAGTGACAGTAATACTACTACTAGAAGTAAAACAAATAATGACAAGAGTTATAATGGTGGCTTCATGAAAAAGGTGAGCAAGAGAAGTTTATGGAAGGGAATGATTGTGATGGGTCCAGGGTCGACGGTTTGTGGGAGAAGTGATGACGTGGCTTCGCAGGCCGGAAGGAGAACGGTTAAGGTTGCGGTGGCTGCAGAGGCTCTGGTCAGGTCGGCGGCAAGTGGGAGTGGCAAGACTCAAAGTGGTCATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

30.17

Weight (kDa)

9.95

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66190 AT5G37550
fragaria_vesca	FvH4_1g30203 FvH4_1g30203
malus_domestica	MD09G1270500.v1.1
prunus_persica	Prupe.3G166400_v2.0.a1
pyrus_communis	pycom09g18160 pycom17g26720
rosa_chinensis	RchiOBHm_Chr3g0491241
rosa_laevigata	RLG00000022848
rosa_multiflora	Rmu_sc0000293.1_g000037 Rmu_sc0014162.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393000 Rroxscaffold_6G00393070
rosa_rugosa	Rorug03G0248600
rosa_samantha	Rh3AG297700 Rh3BG334000 Rh3CG330700 Rh3DG331700
rosa_wichuraiana	Rw3G026230 Rw3G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AccI	GTMKAC	1 cut(s)	680
AciI	CCGC	6 cut(s)	140, 152, 155, 329, 743, 773
AclWI	GGATC	2 cut(s)	268, 369
AcoI	YGGCCR	1 cut(s)	297
AfaI	GTAC	3 cut(s)	170, 248, 338
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	2 cut(s)	472, 544
AjiI	CACGTC	1 cut(s)	706
AjnI	CCWGG	1 cut(s)	673
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	46, 330
AlwI	GGATC	2 cut(s)	268, 369
AoxI	GGCC	2 cut(s)	297, 717
ApeKI	GCWGC	1 cut(s)	749
AspS9I	GGNCC	1 cut(s)	671
AsuHPI	GGTGA	3 cut(s)	24, 157, 643
AvaII	GGWCC	1 cut(s)	671
BauI	CACGAG	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	736
BccI	CCATC	3 cut(s)	43, 97, 661
BceAI	ACGGC	1 cut(s)	496
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	2 cut(s)	487, 529
BcoDI	GTCTC	2 cut(s)	46, 330
BfaI	CTAG	2 cut(s)	441, 579
BfmI	CTRYAG	1 cut(s)	750
BisI	GCNGC	4 cut(s)	153, 156, 750, 774
BlsI	GCNGC	4 cut(s)	154, 157, 751, 775
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	671
BmgBI	CACGTC	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	671
BmiI	GGNNCC	1 cut(s)	672
BmrFI	CCNGG	1 cut(s)	675
BpiI	GAAGAC	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	489
BsaJI	CCNNGG	1 cut(s)	674
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	805
Bse8I	GATNNNNATC	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	674
BseGI	GGATG	1 cut(s)	35
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	805
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	5 cut(s)	94, 132, 135, 138, 141
BseXI	GCAGC	1 cut(s)	736
BshFI	GGCC	2 cut(s)	299, 719
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	720
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	2 cut(s)	46, 330
BsmBI	CGTCTC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	299, 719
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	252, 273, 361, 487, 529
BspACI	CCGC	6 cut(s)	140, 152, 155, 329, 743, 773
BspANI	GGCC	2 cut(s)	299, 719
BspCNI	CTCAG	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	1 cut(s)	672
BspMAI	CTGCAG	1 cut(s)	754
BspPI	GGATC	2 cut(s)	268, 369
BsrDI	GCAATG	1 cut(s)	805
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	5 cut(s)	252, 273, 361, 487, 529
BssSI	CACGAG	1 cut(s)	451
Bst2BI	CACGAG	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	4 cut(s)	246, 566, 685, 733
Bst6I	CTCTTC	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	2 cut(s)	282, 321
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	5 cut(s)	255, 276, 364, 490, 532
BstMAI	GTCTC	2 cut(s)	46, 330
BstMBI	GATC	5 cut(s)	252, 273, 361, 487, 529
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 716, 749, 755
BstNI	CCWGG	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	1 cut(s)	736
BstV2I	GAAGAC	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	299, 719
BtgZI	GCGATG	2 cut(s)	113, 498
BtrI	CACGTC	1 cut(s)	706
BtsCI	GGATG	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	717
CciI	TCATGA	1 cut(s)	621
Cfr13I	GGNCC	1 cut(s)	671
Csp6I	GTAC	3 cut(s)	169, 247, 337
CviAII	CATG	3 cut(s)	271, 533, 622
CviJI	RGCY	9 cut(s)	164, 260, 299, 424, 618, 710, 719, 749, 758
CviKI_1	RGCY	9 cut(s)	164, 260, 299, 424, 618, 710, 719, 749, 758
CviQI	GTAC	3 cut(s)	169, 247, 337
DdeI	CTNAG	2 cut(s)	282, 321
DpnI	GATC	5 cut(s)	254, 275, 363, 489, 531
DpnII	GATC	5 cut(s)	252, 273, 361, 487, 529
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	673
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	3 cut(s)	274, 536, 625
FatI	CATG	3 cut(s)	270, 532, 621
FbaI	TGATCA	2 cut(s)	487, 529
FblI	GTMKAC	1 cut(s)	680
Fnu4HI	GCNGC	4 cut(s)	153, 156, 750, 774
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	4 cut(s)	153, 156, 750, 774
FspBI	CTAG	2 cut(s)	441, 579
GluI	GCNGC	4 cut(s)	153, 156, 750, 774
HaeIII	GGCC	2 cut(s)	299, 719
HapII	CCGG	1 cut(s)	720
Hin1II	CATG	3 cut(s)	274, 536, 625
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HinfI	GANTC	2 cut(s)	437, 793
HpaII	CCGG	1 cut(s)	720
HphI	GGTGA	3 cut(s)	24, 157, 643
Hpy166II	GTNNAC	3 cut(s)	73, 339, 681
Hpy188I	TCNGA	2 cut(s)	46, 283
Hpy188III	TCNNGA	3 cut(s)	365, 389, 622
Hpy8I	GTNNAC	3 cut(s)	73, 339, 681
Hpy99I	CGWCG	1 cut(s)	685
HpyAV	CCTTC	5 cut(s)	142, 176, 249, 646, 717
HpyCH4III	ACNGT	4 cut(s)	246, 566, 685, 733
HpyCH4IV	ACGT	3 cut(s)	69, 371, 705
HpyCH4V	TGCA	1 cut(s)	752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 716, 749, 755
HpyF3I	CTNAG	2 cut(s)	282, 321
HpySE526I	ACGT	3 cut(s)	69, 371, 705
Hsp92II	CATG	3 cut(s)	274, 536, 625
Ksp22I	TGATCA	2 cut(s)	487, 529
Kzo9I	GATC	5 cut(s)	252, 273, 361, 487, 529
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	6 cut(s)	660, 687, 701, 733, 746, 751
Lsp1109I	GCAGC	1 cut(s)	736
MaeI	CTAG	2 cut(s)	441, 579
MaeII	ACGT	3 cut(s)	69, 371, 705
MaeIII	GTNAC	2 cut(s)	211, 560
MalI	GATC	5 cut(s)	254, 275, 363, 489, 531
MboI	GATC	5 cut(s)	252, 273, 361, 487, 529
MboII	GAAGA	9 cut(s)	21, 61, 97, 100, 277, 306, 377, 556, 559
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	343, 350
MlyI	GAGTC	1 cut(s)	787
MseI	TTAA	3 cut(s)	426, 458, 735
MspI	CCGG	1 cut(s)	720
MspR9I	CCNGG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	4 cut(s)	161, 716, 749, 755
NdeII	GATC	5 cut(s)	252, 273, 361, 487, 529
NlaIII	CATG	3 cut(s)	274, 536, 625
NlaIV	GGNNCC	1 cut(s)	672
NmeAIII	GCCGAG	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	560
PagI	TCATGA	1 cut(s)	621
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	437
PkrI	GCNGC	4 cut(s)	154, 157, 751, 775
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
PsiI	TTATAA	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	1 cut(s)	672
PspPI	GGNCC	1 cut(s)	671
PstI	CTGCAG	1 cut(s)	754
RsaI	GTAC	3 cut(s)	170, 248, 338
RsaNI	GTAC	3 cut(s)	169, 247, 337
SalI	GTCGAC	1 cut(s)	679
SaqAI	TTAA	3 cut(s)	426, 458, 735
SatI	GCNGC	4 cut(s)	153, 156, 750, 774
Sau3AI	GATC	5 cut(s)	252, 273, 361, 487, 529
Sau96I	GGNCC	1 cut(s)	671
SchI	GAGTC	1 cut(s)	787
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	8 cut(s)	72, 235, 241, 374, 633, 708, 741, 770
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	1 cut(s)	671
Sse9I	AATT	2 cut(s)	343, 350
SsiI	CCGC	6 cut(s)	140, 152, 155, 329, 743, 773
SspMI	CTAG	2 cut(s)	441, 579
StyD4I	CCNGG	1 cut(s)	673
TaaI	ACNGT	4 cut(s)	246, 566, 685, 733
TaiI	ACGT	3 cut(s)	72, 374, 708
TaqI	TCGA	3 cut(s)	235, 255, 680
TasI	AATT	2 cut(s)	343, 350
TauI	GCSGC	3 cut(s)	155, 158, 776
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	3 cut(s)	426, 458, 735
Tru9I	TTAA	3 cut(s)	426, 458, 735
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	1 cut(s)	749
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	2 cut(s)	610, 638
TspGWI	ACGGA	2 cut(s)	28, 190
VpaK11BI	GGWCC	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	680
XspI	CTAG	2 cut(s)	441, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.