Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010011

Physical Location & Seq

Genomic Coordinates Reverse (-)

36774132 .. 36775512

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG331700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGAGAATTAGGAAGCAGAGCCGAGGTGGCGATGAATTGGCCTTGGTAAAGGCGGCCGCATGGGCATGGTATGAGCATGGGACTGGATTAGAAGGCAAGTCACTGCAGGAATTTGATATCAGAAGAACTTTTCATGATCCTATACCATCCAGGTTCAAGCTAGAAGCCAAGAAATTAGCCGAACAAGGCAGTAGAGTTTTTGATGAAGGGTCAAGTCCGGGAACTAGTGGGAGTGTACAGACTGTTGATGATCATTCACTTCTTGATAGATATGAAATTGAGAGTATTTCTAGGCGGTTGGATCAACTTATAGAGTCTAGTGGTGACAAAGGCACAGTTTATAATAAGGGGTTCCTAGTTGGAGATCGTCTTGCTAAACTGTACGACCACTCTAATCTTGGATGCGGTAGTAGATGCTCACCGCCGCCGAAGTTACAAGTTCCGACGTCTGCAGTTGAAGATCTTCATCGAAAAGGAAGTGTGGCATTATCAGATGGTGACTACACAAATCGCAGGAGGAAGAAAACGAGCAACAACTTTAGAGGGTTTTGGCAAAGGCATGTAGTGATATGCGGTTCAAGTACTCATAAAGATGTAATTCTAGGGACAAGATCTTTTGTGGATAATCGGGGGCAGCAGCAGAACCCGGAAAAGCGGAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

24.9

Weight (kDa)

9.46

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66190 AT5G37550
fragaria_vesca	FvH4_1g30203 FvH4_1g30203
malus_domestica	MD09G1270500.v1.1
prunus_persica	Prupe.3G166400_v2.0.a1
pyrus_communis	pycom09g18160 pycom17g26720
rosa_chinensis	RchiOBHm_Chr3g0491241
rosa_laevigata	RLG00000022848
rosa_multiflora	Rmu_sc0000293.1_g000037 Rmu_sc0014162.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393000 Rroxscaffold_6G00393070
rosa_rugosa	Rorug03G0248600
rosa_samantha	Rh3AG297700 Rh3BG334000 Rh3CG330700 Rh3DG331700
rosa_wichuraiana	Rw3G026230 Rw3G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AatII	GACGTC	1 cut(s)	452
AciI	CCGC	8 cut(s)	56, 60, 298, 408, 425, 428, 576, 658
AclWI	GGATC	2 cut(s)	134, 312
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	449
AfaI	GTAC	3 cut(s)	240, 386, 586
AgsI	TTSAA	3 cut(s)	160, 461, 582
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
AlwI	GGATC	2 cut(s)	134, 312
AoxI	GGCC	2 cut(s)	42, 57
ApeKI	GCWGC	2 cut(s)	637, 640
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	465
AsuC2I	CCSGG	2 cut(s)	222, 650
AsuHPI	GGTGA	3 cut(s)	338, 414, 512
BbvI	GCAGC	2 cut(s)	649, 652
BccI	CCATC	2 cut(s)	157, 491
BciT130I	CCWGG	1 cut(s)	154
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	2 cut(s)	222, 650
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
BfmI	CTRYAG	2 cut(s)	107, 453
BglI	GCCNNNNNGGC	2 cut(s)	30, 65
BglII	AGATCT	2 cut(s)	463, 614
BisI	GCNGC	5 cut(s)	57, 60, 428, 638, 641
BlsI	GCNGC	5 cut(s)	58, 61, 429, 639, 642
BmcAI	AGTACT	1 cut(s)	586
Bme1390I	CCNGG	3 cut(s)	154, 222, 650
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	3 cut(s)	154, 222, 650
BmsI	GCATC	2 cut(s)	395, 407
BpuMI	CCSGG	2 cut(s)	222, 650
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	25, 45
Bse1I	ACTGG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	25, 45
BseGI	GGATG	2 cut(s)	149, 410
BseJI	GATNNNNATC	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	91
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	649, 652
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	44, 59
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	221, 650
BslFI	GGGAC	2 cut(s)	97, 622
BsmFI	GGGAC	2 cut(s)	97, 622
BsnI	GGCC	2 cut(s)	44, 59
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	6 cut(s)	139, 253, 304, 367, 463, 614
BspACI	CCGC	8 cut(s)	56, 60, 298, 408, 425, 428, 576, 658
BspANI	GGCC	2 cut(s)	44, 59
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	356
BspMAI	CTGCAG	2 cut(s)	111, 457
BspPI	GGATC	2 cut(s)	134, 312
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	25, 45
BssMI	GATC	6 cut(s)	139, 253, 304, 367, 463, 614
BssNI	GRCGYC	1 cut(s)	449
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	3 cut(s)	247, 340, 384
BstACI	GRCGYC	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	149, 410
BstKTI	GATC	6 cut(s)	142, 256, 307, 370, 466, 617
BstMBI	GATC	6 cut(s)	139, 253, 304, 367, 463, 614
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 65
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	3 cut(s)	152, 220, 648
BstSFI	CTRYAG	2 cut(s)	107, 453
BstV1I	GCAGC	2 cut(s)	649, 652
BstX2I	RGATCY	2 cut(s)	463, 614
BstYI	RGATCY	2 cut(s)	463, 614
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	44, 59
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	149, 410
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
CciI	TCATGA	1 cut(s)	136
CciNI	GCGGCCGC	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	239, 385, 585
CviAII	CATG	5 cut(s)	63, 69, 80, 137, 563
CviJI	RGCY	6 cut(s)	24, 44, 59, 163, 170, 182
CviKI_1	RGCY	6 cut(s)	24, 44, 59, 163, 170, 182
CviQI	GTAC	3 cut(s)	239, 385, 585
DpnI	GATC	6 cut(s)	141, 255, 306, 369, 465, 616
DpnII	GATC	6 cut(s)	139, 253, 304, 367, 463, 614
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	121
Eco52I	CGGCCG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	5 cut(s)	66, 72, 83, 140, 566
FaqI	GGGAC	2 cut(s)	97, 622
FatI	CATG	5 cut(s)	62, 68, 79, 136, 562
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	5 cut(s)	57, 60, 428, 638, 641
FokI	GGATG	2 cut(s)	136, 417
Fsp4HI	GCNGC	5 cut(s)	57, 60, 428, 638, 641
FspBI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
GluI	GCNGC	5 cut(s)	57, 60, 428, 638, 641
HaeIII	GGCC	2 cut(s)	44, 59
HapII	CCGG	2 cut(s)	221, 650
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	5 cut(s)	66, 72, 83, 140, 566
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	2 cut(s)	221, 650
HphI	GGTGA	3 cut(s)	338, 414, 512
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	125, 447, 496
Hpy188III	TCNNGA	2 cut(s)	137, 266
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	1 cut(s)	451
HpyAV	CCTTC	2 cut(s)	89, 203
HpyCH4III	ACNGT	3 cut(s)	247, 340, 384
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	2 cut(s)	109, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 65
HpySE526I	ACGT	1 cut(s)	449
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	5 cut(s)	66, 72, 83, 140, 566
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	6 cut(s)	139, 253, 304, 367, 463, 614
LpnPI	CCDG	7 cut(s)	72, 95, 139, 166, 234, 502, 663
Lsp1109I	GCAGC	2 cut(s)	649, 652
LweI	GCATC	2 cut(s)	395, 407
MaeI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	4 cut(s)	102, 326, 435, 500
MalI	GATC	6 cut(s)	141, 255, 306, 369, 465, 616
MboI	GATC	6 cut(s)	139, 253, 304, 367, 463, 614
MboII	GAAGA	4 cut(s)	138, 458, 473, 535
MflI	RGATCY	2 cut(s)	463, 614
MluCI	AATT	6 cut(s)	9, 38, 113, 176, 279, 600
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	3 cut(s)	282, 343, 470
MnlI	CCTC	3 cut(s)	20, 513, 539
MroXI	GAANNNNTTC	1 cut(s)	465
MslI	CAYNNNNRTG	2 cut(s)	67, 594
MspI	CCGG	2 cut(s)	221, 650
MspR9I	CCNGG	3 cut(s)	154, 222, 650
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	2 cut(s)	30, 65
NciI	CCSGG	2 cut(s)	222, 650
NdeII	GATC	6 cut(s)	139, 253, 304, 367, 463, 614
NlaIII	CATG	5 cut(s)	66, 72, 83, 140, 566
NlaIV	GGNNCC	1 cut(s)	356
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	3 cut(s)	102, 326, 500
NotI	GCGGCCGC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	566
PagI	TCATGA	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	465
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	5 cut(s)	58, 61, 429, 639, 642
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	356
PstI	CTGCAG	2 cut(s)	111, 457
PsuI	RGATCY	2 cut(s)	463, 614
RsaI	GTAC	3 cut(s)	240, 386, 586
RsaNI	GTAC	3 cut(s)	239, 385, 585
RseI	CAYNNNNRTG	2 cut(s)	67, 594
SatI	GCNGC	5 cut(s)	57, 60, 428, 638, 641
Sau3AI	GATC	6 cut(s)	139, 253, 304, 367, 463, 614
ScaI	AGTACT	1 cut(s)	586
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	3 cut(s)	154, 222, 650
SetI	ASST	4 cut(s)	31, 158, 165, 452
SfaNI	GCATC	2 cut(s)	395, 407
SfcI	CTRYAG	2 cut(s)	107, 453
SmiMI	CAYNNNNRTG	2 cut(s)	67, 594
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	6 cut(s)	9, 38, 113, 176, 279, 600
SsiI	CCGC	8 cut(s)	56, 60, 298, 408, 425, 428, 576, 658
SspMI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
StyD4I	CCNGG	3 cut(s)	152, 220, 648
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	247, 340, 384
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	472
TasI	AATT	6 cut(s)	9, 38, 113, 176, 279, 600
TatI	WGTACW	2 cut(s)	238, 584
TauI	GCSGC	3 cut(s)	59, 62, 430
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	3 cut(s)	102, 326, 500
TseI	GCWGC	2 cut(s)	637, 640
Tsp45I	GTSAC	3 cut(s)	102, 326, 500
TspDTI	ATGAA	5 cut(s)	51, 125, 222, 291, 458
TspRI	CASTG	1 cut(s)	111
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
ZraI	GACGTC	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.