Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010011

Physical Location & Seq

Genomic Coordinates Reverse (-)

14918901 .. 14920025

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCTTCCATTCGCCAACTACTACATTTCAACACCAATTATGTCCGAGAAGAAGAGCATCACCAGAAGCCGTAACAATAGTAGAAAGAAGAGATGGTCACCGACGCTCTTTGCCGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGATGATGAGCTGGCGACAGTGAAAGCTGCGGCGTGGGCTTGGTACCAAAGACACGAAGGAAAGCCGATGATGAGAGAGTTCGATCTCTCGAAAAGAGCCATAAGAACACCTCGACCTTCGCGGTATAAGCTCGAGGCCAACAAGACCATGATCCTCTCCGAGAATAAGGTTTCTAAACCACACTCTAATCATTTTTTGCGTGGAGATCAAGAAACCAAGTTGTCTAGTCTTCTTGATTCTTATGAGATCAAGAGCATCTCTAAGAGGATTGATGAGGGTTCGTTACCAACTATTGGTTTCTGGAATGATCATGGTCAACATTATGATCATAATATGTTGCAGAAGAAGCTTGAATATGATAGTAAGCAAGAGAATGGGTTGGTGAAAAAAATGAGCATTAGAAATTTGTGGAAAGGAATGATTATGATGGCTCCAAGGACGGTTTGTGGAAGAAGTGATGACGTGGATCTTGGGGCATATCATCGGGTTGGTCCAAGAACAAAGAAGGTTGCACCGACGAGTGTCAATATGCGTACCGGCCGACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

26.25

Weight (kDa)

10.16

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66190 AT5G37550
fragaria_vesca	FvH4_1g30203 FvH4_1g30203
malus_domestica	MD09G1270500.v1.1
prunus_persica	Prupe.3G166400_v2.0.a1
pyrus_communis	pycom09g18160 pycom17g26720
rosa_chinensis	RchiOBHm_Chr3g0491241
rosa_laevigata	RLG00000022848
rosa_multiflora	Rmu_sc0000293.1_g000037 Rmu_sc0014162.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393000 Rroxscaffold_6G00393070
rosa_rugosa	Rorug03G0248600
rosa_samantha	Rh3AG297700 Rh3BG334000 Rh3CG330700 Rh3DG331700
rosa_wichuraiana	Rw3G026230 Rw3G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	186
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccII	CGCG	1 cut(s)	265
AciI	CCGC	2 cut(s)	173, 265
AclWI	GGATC	2 cut(s)	289, 618
AcoI	YGGCCR	1 cut(s)	682
AcsI	RAATTY	1 cut(s)	547
AfaI	GTAC	2 cut(s)	188, 679
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	2 cut(s)	30, 497
AjiI	CACGTC	1 cut(s)	607
AluBI	AGCT	4 cut(s)	154, 170, 274, 493
AluI	AGCT	4 cut(s)	154, 170, 274, 493
AlwI	GGATC	2 cut(s)	289, 618
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	279, 682
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	547
Asp718I	GGTACC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	3 cut(s)	52, 90, 538
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	635
BanI	GGYRCC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	2 cut(s)	87, 565
BceAI	ACGGC	1 cut(s)	54
BclI	TGATCA	2 cut(s)	451, 469
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	2 cut(s)	171, 174
BlsI	GCNGC	2 cut(s)	172, 175
Bme18I	GGWCC	1 cut(s)	635
BmeT110I	CYCGRG	1 cut(s)	275
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	2 cut(s)	188, 576
BmsI	GCATC	2 cut(s)	66, 408
BoxI	GACNNNNGTC	1 cut(s)	665
BpiI	GAAGAC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	1 cut(s)	680
BseDI	CCNNGG	1 cut(s)	578
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseRI	GAGGAG	7 cut(s)	132, 135, 138, 147, 150, 153, 156
BseX3I	CGGCCG	1 cut(s)	682
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	265
Bsh1285I	CGRYCG	1 cut(s)	685
BshFI	GGCC	2 cut(s)	281, 684
BshNI	GGYRCC	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	685
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	114, 681
BslI	CCNNNNNNNGG	1 cut(s)	437
BsnI	GGCC	2 cut(s)	281, 684
BsoBI	CYCGRG	1 cut(s)	275
Bsp143I	GATC	7 cut(s)	226, 294, 349, 390, 451, 469, 610
BspACI	CCGC	2 cut(s)	173, 265
BspANI	GGCC	2 cut(s)	281, 684
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	188, 576
BspPI	GGATC	2 cut(s)	289, 618
BspQI	GCTCTTC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	680
BssAI	RCCGGY	1 cut(s)	680
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	7 cut(s)	226, 294, 349, 390, 451, 469, 610
BssT1I	CCWWGG	1 cut(s)	578
Bst4CI	ACNGT	2 cut(s)	163, 586
Bst6I	CTCTTC	3 cut(s)	47, 83, 124
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	405
BstEII	GGTNACC	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	265
BstKTI	GATC	7 cut(s)	229, 297, 352, 393, 454, 472, 613
BstMBI	GATC	7 cut(s)	226, 294, 349, 390, 451, 469, 610
BstMCI	CGRYCG	1 cut(s)	685
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 271, 490
BstPAI	GACNNNNGTC	1 cut(s)	665
BstPI	GGTNACC	1 cut(s)	96
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BstZI	CGGCCG	1 cut(s)	682
BsuRI	GGCC	2 cut(s)	281, 684
BtrI	CACGTC	1 cut(s)	607
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	680
Cfr13I	GGNCC	1 cut(s)	635
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	187, 678
CviAII	CATG	2 cut(s)	292, 455
CviQI	GTAC	2 cut(s)	187, 678
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	7 cut(s)	228, 296, 351, 392, 453, 471, 612
DpnII	GATC	7 cut(s)	226, 294, 349, 390, 451, 469, 610
EaeI	YGGCCR	1 cut(s)	682
EagI	CGGCCG	1 cut(s)	682
Eam1104I	CTCTTC	3 cut(s)	47, 83, 124
EarI	CTCTTC	3 cut(s)	47, 83, 124
EclXI	CGGCCG	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	635
Eco52I	CGGCCG	1 cut(s)	682
Eco88I	CYCGRG	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	96
EcoO65I	GGTNACC	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	2 cut(s)	295, 458
FatI	CATG	2 cut(s)	291, 454
FbaI	TGATCA	2 cut(s)	451, 469
Fnu4HI	GCNGC	2 cut(s)	171, 174
Fsp4HI	GCNGC	2 cut(s)	171, 174
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	2 cut(s)	171, 174
HaeIII	GGCC	2 cut(s)	281, 684
HapII	CCGG	2 cut(s)	114, 681
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	295, 458
HincII	GTYRAC	1 cut(s)	461
HindII	GTYRAC	1 cut(s)	461
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	2 cut(s)	114, 681
HphI	GGTGA	3 cut(s)	52, 90, 538
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	2 cut(s)	46, 304
Hpy188III	TCNNGA	5 cut(s)	232, 353, 377, 394, 445
Hpy8I	GTNNAC	1 cut(s)	461
Hpy99I	CGWCG	3 cut(s)	106, 664, 690
HpyAV	CCTTC	3 cut(s)	194, 270, 643
HpyCH4III	ACNGT	2 cut(s)	163, 586
HpyCH4IV	ACGT	1 cut(s)	606
HpyCH4V	TGCA	2 cut(s)	484, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 271, 490
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	606
Hsp92II	CATG	2 cut(s)	295, 458
KpnI	GGTACC	1 cut(s)	190
Ksp22I	TGATCA	2 cut(s)	451, 469
Kzo9I	GATC	7 cut(s)	226, 294, 349, 390, 451, 469, 610
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	1 cut(s)	580
LpnPI	CCDG	4 cut(s)	76, 127, 140, 430
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	2 cut(s)	66, 408
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	606
MaeIII	GTNAC	3 cut(s)	71, 96, 426
MalI	GATC	7 cut(s)	228, 296, 351, 392, 453, 471, 612
MboI	GATC	7 cut(s)	226, 294, 349, 390, 451, 469, 610
MboII	GAAGA	7 cut(s)	61, 64, 100, 141, 365, 499, 606
MflI	RGATCY	1 cut(s)	610
MluCI	AATT	2 cut(s)	36, 547
MspI	CCGG	2 cut(s)	114, 681
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	3 cut(s)	179, 271, 490
NdeII	GATC	7 cut(s)	226, 294, 349, 390, 451, 469, 610
NlaIII	CATG	2 cut(s)	295, 458
NlaIV	GGNNCC	2 cut(s)	188, 576
NmuCI	GTSAC	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	172, 175
PshAI	GACNNNNGTC	1 cut(s)	665
PspEI	GGTNACC	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	188, 576
PspPI	GGNCC	1 cut(s)	635
PspXI	VCTCGAGB	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	2 cut(s)	188, 679
RsaNI	GTAC	2 cut(s)	187, 678
SapI	GCTCTTC	1 cut(s)	47
SatI	GCNGC	2 cut(s)	171, 174
Sau3AI	GATC	7 cut(s)	226, 294, 349, 390, 451, 469, 610
Sau96I	GGNCC	1 cut(s)	635
SetI	ASST	9 cut(s)	156, 172, 256, 262, 276, 315, 495, 609, 654
SfaNI	GCATC	2 cut(s)	66, 408
Sfr274I	CTCGAG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	635
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	36, 547
SsiI	CCGC	2 cut(s)	173, 265
SspMI	CTAG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	2 cut(s)	163, 586
TaiI	ACGT	1 cut(s)	609
TaqI	TCGA	4 cut(s)	225, 233, 256, 276
TasI	AATT	2 cut(s)	36, 547
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	380
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	96
TspRI	CASTG	1 cut(s)	168
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	275
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.