Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010011

Physical Location & Seq

Genomic Coordinates Forward (+)

18525884 .. 18528742

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G166400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAGAGAAGAAAGAGTAGGAGAAGCTGCAATGATGAATTGGCATTAGTAAAGGCAGCTGCATGGGCATGGTTTCAACATGGATCCGGGACCGACGGCAAACCAGTTATGCCGGAATTTGATGTCAGAAGGACTTGTCATGCTCCTTATAAACCATCCAGGTACAAGCTAGAAGCTATGTTGATTTCTAATATTAATAAACAAGGCATGGAATTTGAAGGGTTGAAATCACTAAGTGTTGTTGAGAGTATCTCTGATCATTCGCTTCTTGATACATATGAAATTGAGAGTATTTCCCGGAAATTGGATCAACTTATAGAGTCTAGTGGTGAAGGCAAACTGTCTAAGGGGTTCCTAGCTGGAGATGTTCTTGGTAGAAACAAGGCCAAACCGGGAGGCAGAGGCTCAAACTCTGACCTTGAGTGCGGAGATAAATGTTCGCTACCACTCAAGTTACAAGCTTCTAATCTTGTTGAAGATAATCGTCGACAAGGAAGAAGTGAGTCACTAATGGATGGTAAAACAAATGGGAGGAAGAACAAGAACAAGAACTTTACAGGGTTTTGGAATAGGCATGCAGCAATATGTGGCAGAAGTGATGATGTTCTAAACACAAAAGCTTTCGTGGTTAGTCGTCGCCGGCCGCGGGAAAAGGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.56

Weight (kDa)

9.63

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66190 AT5G37550
fragaria_vesca	FvH4_1g30203 FvH4_1g30203
malus_domestica	MD09G1270500.v1.1
prunus_persica	Prupe.3G166400_v2.0.a1
pyrus_communis	pycom09g18160 pycom17g26720
rosa_chinensis	RchiOBHm_Chr3g0491241
rosa_laevigata	RLG00000022848
rosa_multiflora	Rmu_sc0000293.1_g000037 Rmu_sc0014162.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393000 Rroxscaffold_6G00393070
rosa_rugosa	Rorug03G0248600
rosa_samantha	Rh3AG297700 Rh3BG334000 Rh3CG330700 Rh3DG331700
rosa_wichuraiana	Rw3G026230 Rw3G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	487
AccII	CGCG	1 cut(s)	646
AciI	CCGC	3 cut(s)	426, 644, 646
AclWI	GGATC	3 cut(s)	78, 91, 315
AcoI	YGGCCR	1 cut(s)	641
AcsI	RAATTY	2 cut(s)	116, 212
AdeI	CACNNNGTG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	304, 646
AgsI	TTSAA	4 cut(s)	77, 218, 226, 476
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	7 cut(s)	27, 59, 169, 176, 359, 461, 620
AluI	AGCT	7 cut(s)	27, 59, 169, 176, 359, 461, 620
AlwI	GGATC	3 cut(s)	78, 91, 315
AoxI	GGCC	2 cut(s)	384, 641
ApeKI	GCWGC	4 cut(s)	27, 56, 59, 578
ApoI	RAATTY	2 cut(s)	116, 212
AseI	ATTAAT	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	90
AsuC2I	CCSGG	3 cut(s)	88, 298, 393
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	83
BbvI	GCAGC	4 cut(s)	14, 46, 68, 590
BccI	CCATC	2 cut(s)	163, 509
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	160
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	3 cut(s)	88, 298, 393
BfaI	CTAG	3 cut(s)	170, 324, 356
BisI	GCNGC	5 cut(s)	28, 57, 60, 579, 644
BlsI	GCNGC	5 cut(s)	29, 58, 61, 580, 645
Bme1390I	CCNGG	4 cut(s)	88, 160, 298, 393
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	3 cut(s)	85, 91, 353
BmrFI	CCNGG	4 cut(s)	88, 160, 298, 393
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	434, 440
BpuMI	CCSGG	3 cut(s)	88, 298, 393
BsaJI	CCNNGG	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 646
Bse118I	RCCGGY	1 cut(s)	639
Bse1I	ACTGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	644
BseGI	GGATG	2 cut(s)	155, 520
BseLI	CCNNNNNNNGG	2 cut(s)	304, 646
BseMI	GCAATG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	104
BseX3I	CGGCCG	1 cut(s)	641
BseXI	GCAGC	4 cut(s)	14, 46, 68, 590
Bsh1236I	CGCG	1 cut(s)	646
Bsh1285I	CGRYCG	1 cut(s)	644
BshFI	GGCC	2 cut(s)	386, 643
BsiEI	CGRYCG	1 cut(s)	644
BsiSI	CCGG	5 cut(s)	87, 113, 298, 392, 640
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	304, 646
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	386, 643
Bsp143I	GATC	3 cut(s)	83, 256, 307
BspACI	CCGC	3 cut(s)	426, 644, 646
BspANI	GGCC	2 cut(s)	386, 643
BspFNI	CGCG	1 cut(s)	646
BspLI	GGNNCC	3 cut(s)	85, 91, 353
BspPI	GGATC	3 cut(s)	78, 91, 315
BsrDI	GCAATG	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	639
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	639
BssECI	CCNNGG	1 cut(s)	644
BssMI	GATC	3 cut(s)	83, 256, 307
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	576, 641
BstDEI	CTNAG	2 cut(s)	233, 345
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	2 cut(s)	155, 520
BstFNI	CGCG	1 cut(s)	646
BstKTI	GATC	3 cut(s)	86, 259, 310
BstMBI	GATC	3 cut(s)	83, 256, 307
BstMCI	CGRYCG	1 cut(s)	644
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	4 cut(s)	86, 158, 296, 391
BstUI	CGCG	1 cut(s)	646
BstV1I	GCAGC	4 cut(s)	14, 46, 68, 590
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BstZI	CGGCCG	1 cut(s)	641
BsuRI	GGCC	2 cut(s)	386, 643
BtgI	CCRYGG	1 cut(s)	644
BtsCI	GGATG	2 cut(s)	155, 520
Cac8I	GCNNGC	2 cut(s)	576, 641
Cfr10I	RCCGGY	1 cut(s)	639
Cfr13I	GGNCC	1 cut(s)	90
Cfr42I	CCGCGG	1 cut(s)	647
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	6 cut(s)	63, 69, 80, 140, 208, 575
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	2 cut(s)	233, 345
DpnI	GATC	3 cut(s)	85, 258, 309
DpnII	GATC	3 cut(s)	83, 256, 307
DraIII	CACNNNGTG	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	641
EagI	CGGCCG	1 cut(s)	641
EclXI	CGGCCG	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	90
Eco52I	CGGCCG	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	158
FaeI	CATG	6 cut(s)	66, 72, 83, 143, 211, 578
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	6 cut(s)	62, 68, 79, 139, 207, 574
FauI	CCCGC	1 cut(s)	639
FauNDI	CATATG	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	487
Fnu4HI	GCNGC	5 cut(s)	28, 57, 60, 579, 644
FokI	GGATG	2 cut(s)	142, 527
Fsp4HI	GCNGC	5 cut(s)	28, 57, 60, 579, 644
FspBI	CTAG	3 cut(s)	170, 324, 356
GluI	GCNGC	5 cut(s)	28, 57, 60, 579, 644
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	386, 643
HapII	CCGG	5 cut(s)	87, 113, 298, 392, 640
Hin1II	CATG	6 cut(s)	66, 72, 83, 143, 211, 578
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HindIII	AAGCTT	2 cut(s)	459, 618
HinfI	GANTC	2 cut(s)	320, 503
HpaII	CCGG	5 cut(s)	87, 113, 298, 392, 640
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	3 cut(s)	128, 256, 415
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	488
Hpy99I	CGWCG	3 cut(s)	98, 489, 639
HpyAV	CCTTC	3 cut(s)	123, 212, 326
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	3 cut(s)	30, 62, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	233, 345
Hsp92II	CATG	6 cut(s)	66, 72, 83, 143, 211, 578
KroI	GCCGGC	1 cut(s)	639
KroNI	GCCGGC	1 cut(s)	641
Ksp22I	TGATCA	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	647
Kzo9I	GATC	3 cut(s)	83, 256, 307
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	4 cut(s)	14, 46, 68, 590
MaeI	CTAG	3 cut(s)	170, 324, 356
MaeIII	GTNAC	2 cut(s)	453, 504
MalI	GATC	3 cut(s)	85, 258, 309
MboI	GATC	3 cut(s)	83, 256, 307
MboII	GAAGA	4 cut(s)	21, 488, 507, 547
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	5 cut(s)	38, 116, 212, 282, 302
MlyI	GAGTC	2 cut(s)	329, 512
MnlI	CCTC	3 cut(s)	389, 395, 525
MroNI	GCCGGC	1 cut(s)	639
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	67
MspA1I	CMGCKG	2 cut(s)	59, 646
MspI	CCGG	5 cut(s)	87, 113, 298, 392, 640
MspR9I	CCNGG	4 cut(s)	88, 160, 298, 393
MvaI	CCWGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	646
MwoI	GCNNNNNNNGC	1 cut(s)	65
NaeI	GCCGGC	1 cut(s)	641
NciI	CCSGG	3 cut(s)	88, 298, 393
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	3 cut(s)	83, 256, 307
NgoMIV	GCCGGC	1 cut(s)	639
NlaIII	CATG	6 cut(s)	66, 72, 83, 143, 211, 578
NlaIV	GGNNCC	3 cut(s)	85, 91, 353
NmuCI	GTSAC	1 cut(s)	504
NspI	RCATGY	1 cut(s)	578
PaeI	GCATGC	1 cut(s)	578
PdiI	GCCGGC	1 cut(s)	641
PfoI	TCCNGGA	2 cut(s)	86, 296
PkrI	GCNGC	5 cut(s)	29, 58, 61, 580, 645
PleI	GAGTC	2 cut(s)	328, 511
PpsI	GAGTC	2 cut(s)	328, 511
PshBI	ATTAAT	1 cut(s)	195
PsiI	TTATAA	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	3 cut(s)	85, 91, 353
PspPI	GGNCC	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	67
SacII	CCGCGG	1 cut(s)	647
SalI	GTCGAC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	5 cut(s)	28, 57, 60, 579, 644
Sau3AI	GATC	3 cut(s)	83, 256, 307
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	2 cut(s)	329, 512
ScrFI	CCNGG	4 cut(s)	88, 160, 298, 393
SetI	ASST	9 cut(s)	29, 61, 164, 171, 178, 361, 420, 463, 622
Sfr303I	CCGCGG	1 cut(s)	647
SgrBI	CCGCGG	1 cut(s)	647
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	67
SmlI	CTYRAG	2 cut(s)	419, 449
SmoI	CTYRAG	2 cut(s)	419, 449
SphI	GCATGC	1 cut(s)	578
Sse9I	AATT	5 cut(s)	38, 116, 212, 282, 302
SsiI	CCGC	3 cut(s)	426, 644, 646
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	3 cut(s)	170, 324, 356
StyD4I	CCNGG	4 cut(s)	86, 158, 296, 391
TaaI	ACNGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	487
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	5 cut(s)	38, 116, 212, 282, 302
TauI	GCSGC	1 cut(s)	646
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	4 cut(s)	27, 56, 59, 578
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	2 cut(s)	51, 294
VpaK11BI	GGWCC	1 cut(s)	90
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	2 cut(s)	116, 212
XceI	RCATGY	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	3 cut(s)	170, 324, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.