Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010011

Physical Location & Seq

Genomic Coordinates Forward (+)

23931375 .. 23933355

Gene Structure 1981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30203.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAGAGAATTAGGAAGGGTAGCGGCGGCGGCAACGGATCTGCAGCGTTAGTAAAGGCGGCTGCATGGGCATGGTATGAGCATGGAACTGGATTACAAGGCAAGTCACTGCAGGAGTTTGATATCAGAAGAAGTTCTCATGATCTTAAACCATCCAGGTTCAAGCTGGAAGCTAAGAAATTAGCTGAACAAGGCAGTAGAGATTTTGATGATCGTTCACTTCTTGATCGATATGAAATTGAGAGTATTTCTAGGCGGTTGGATCAACTTATAGAATCCAGTGGTGACAAAGGCAAAGTTTATAATAAAGGGTTCCTAGTTCAAGACGATTCTGATCATCCTGGATCATGCAGCAGTAAGAAGTCAATAGCTCCAACATCTGCAGTTGGGGATCTTGGTCGAAAAGAAAGTGTGGCGTTATCAGATGTACCTGGAAAAGAGGAAGGTGTACCCGCCGGTACCGGTGGTAAAGTTGGCCGACTGTCGGCCAAAGGCCACTGGCCGTCACACACACGCATTGTGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.02

Weight (kDa)

9.32

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66190 AT5G37550
fragaria_vesca	FvH4_1g30203 FvH4_1g30203
malus_domestica	MD09G1270500.v1.1
prunus_persica	Prupe.3G166400_v2.0.a1
pyrus_communis	pycom09g18160 pycom17g26720
rosa_chinensis	RchiOBHm_Chr3g0491241
rosa_laevigata	RLG00000022848
rosa_multiflora	Rmu_sc0000293.1_g000037 Rmu_sc0014162.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393000 Rroxscaffold_6G00393070
rosa_rugosa	Rorug03G0248600
rosa_samantha	Rh3AG297700 Rh3BG334000 Rh3CG330700 Rh3DG331700
rosa_wichuraiana	Rw3G026230 Rw3G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
Acc65I	GGTACC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	458
AciI	CCGC	6 cut(s)	24, 27, 30, 59, 256, 453
AclWI	GGATC	4 cut(s)	46, 270, 352, 399
AcoI	YGGCCR	3 cut(s)	475, 486, 500
AfaI	GTAC	3 cut(s)	429, 450, 460
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgeI	ACCGGT	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	163, 323
AjnI	CCWGG	3 cut(s)	155, 340, 430
AluBI	AGCT	4 cut(s)	166, 173, 185, 371
AluI	AGCT	4 cut(s)	166, 173, 185, 371
AlwI	GGATC	4 cut(s)	46, 270, 352, 399
AoxI	GGCC	4 cut(s)	475, 486, 493, 500
ApeKI	GCWGC	3 cut(s)	44, 62, 351
AsiGI	ACCGGT	1 cut(s)	461
Asp700I	GAANNNNTTC	1 cut(s)	133
Asp718I	GGTACC	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	458
BbvI	GCAGC	3 cut(s)	49, 56, 363
BccI	CCATC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	487
BciT130I	CCWGG	3 cut(s)	157, 342, 432
BclI	TGATCA	2 cut(s)	334, 522
BfaI	CTAG	2 cut(s)	252, 317
BfmI	CTRYAG	3 cut(s)	42, 110, 381
BisI	GCNGC	7 cut(s)	25, 28, 31, 45, 60, 63, 352
BlsI	GCNGC	7 cut(s)	26, 29, 32, 46, 61, 64, 353
Bme1390I	CCNGG	3 cut(s)	157, 342, 432
BmiI	GGNNCC	2 cut(s)	314, 460
BmrFI	CCNGG	3 cut(s)	157, 342, 432
Bsa29I	ATCGAT	1 cut(s)	229
BsaBI	GATNNNNATC	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse118I	RCCGGY	2 cut(s)	455, 461
Bse1I	ACTGG	3 cut(s)	94, 279, 503
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	3 cut(s)	157, 342, 432
BseCI	ATCGAT	1 cut(s)	229
BseGI	GGATG	2 cut(s)	152, 337
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseNI	ACTGG	3 cut(s)	94, 279, 503
BseXI	GCAGC	3 cut(s)	49, 56, 363
BshFI	GGCC	4 cut(s)	477, 488, 495, 502
BshNI	GGYRCC	1 cut(s)	458
BshTI	ACCGGT	1 cut(s)	461
BshVI	ATCGAT	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	456, 462
BslI	CCNNNNNNNGG	1 cut(s)	484
BsnI	GGCC	4 cut(s)	477, 488, 495, 502
Bsp143I	GATC	9 cut(s)	38, 142, 211, 226, 262, 334, 344, 391, 522
BspACI	CCGC	6 cut(s)	24, 27, 30, 59, 256, 453
BspANI	GGCC	4 cut(s)	477, 488, 495, 502
BspDI	ATCGAT	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	314, 460
BspMAI	CTGCAG	3 cut(s)	46, 114, 385
BspPI	GGATC	4 cut(s)	46, 270, 352, 399
BspT107I	GGYRCC	1 cut(s)	458
BsrFI	RCCGGY	2 cut(s)	455, 461
BsrI	ACTGG	3 cut(s)	94, 279, 503
BssAI	RCCGGY	2 cut(s)	455, 461
BssMI	GATC	9 cut(s)	38, 142, 211, 226, 262, 334, 344, 391, 522
Bst2UI	CCWGG	3 cut(s)	157, 342, 432
Bst4CI	ACNGT	1 cut(s)	483
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	152, 337
BstKTI	GATC	9 cut(s)	41, 145, 214, 229, 265, 337, 347, 394, 525
BstMBI	GATC	9 cut(s)	38, 142, 211, 226, 262, 334, 344, 391, 522
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 68
BstNI	CCWGG	3 cut(s)	157, 342, 432
BstSCI	CCNGG	3 cut(s)	155, 340, 430
BstSFI	CTRYAG	3 cut(s)	42, 110, 381
BstV1I	GCAGC	3 cut(s)	49, 56, 363
BstX2I	RGATCY	2 cut(s)	38, 391
BstYI	RGATCY	2 cut(s)	38, 391
Bsu15I	ATCGAT	1 cut(s)	229
BsuRI	GGCC	4 cut(s)	477, 488, 495, 502
BsuTUI	ATCGAT	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	152, 337
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	3 cut(s)	107, 286, 496
CciI	TCATGA	1 cut(s)	139
Cfr10I	RCCGGY	2 cut(s)	455, 461
ClaI	ATCGAT	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	428, 449, 459
CspAI	ACCGGT	1 cut(s)	461
CviAII	CATG	5 cut(s)	66, 72, 83, 140, 348
CviJI	RGCY	9 cut(s)	62, 166, 173, 185, 371, 477, 488, 495, 502
CviKI_1	RGCY	9 cut(s)	62, 166, 173, 185, 371, 477, 488, 495, 502
CviQI	GTAC	3 cut(s)	428, 449, 459
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	9 cut(s)	40, 144, 213, 228, 264, 336, 346, 393, 524
DpnII	GATC	9 cut(s)	38, 142, 211, 226, 262, 334, 344, 391, 522
EaeI	YGGCCR	3 cut(s)	475, 486, 500
Eco32I	GATATC	1 cut(s)	124
EcoRII	CCWGG	3 cut(s)	155, 340, 430
EcoRV	GATATC	1 cut(s)	124
FaeI	CATG	5 cut(s)	69, 75, 86, 143, 351
FaiI	YATR	9 cut(s)	67, 73, 78, 84, 141, 234, 272, 303, 349
FatI	CATG	5 cut(s)	65, 71, 82, 139, 347
FauI	CCCGC	1 cut(s)	460
FbaI	TGATCA	2 cut(s)	334, 522
Fnu4HI	GCNGC	7 cut(s)	25, 28, 31, 45, 60, 63, 352
FokI	GGATG	2 cut(s)	139, 324
Fsp4HI	GCNGC	7 cut(s)	25, 28, 31, 45, 60, 63, 352
FspBI	CTAG	2 cut(s)	252, 317
GluI	GCNGC	7 cut(s)	25, 28, 31, 45, 60, 63, 352
HaeIII	GGCC	4 cut(s)	477, 488, 495, 502
HapII	CCGG	2 cut(s)	456, 462
Hin1II	CATG	5 cut(s)	69, 75, 86, 143, 351
HinfI	GANTC	2 cut(s)	275, 329
HpaII	CCGG	2 cut(s)	456, 462
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	2 cut(s)	218, 449
Hpy188I	TCNGA	3 cut(s)	128, 334, 424
Hpy188III	TCNNGA	3 cut(s)	140, 224, 323
Hpy8I	GTNNAC	2 cut(s)	218, 449
HpyAV	CCTTC	2 cut(s)	10, 437
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4V	TGCA	5 cut(s)	44, 65, 112, 351, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 68
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	5 cut(s)	69, 75, 86, 143, 351
KpnI	GGTACC	1 cut(s)	462
Ksp22I	TGATCA	2 cut(s)	334, 522
Kzo9I	GATC	9 cut(s)	38, 142, 211, 226, 262, 334, 344, 391, 522
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	3 cut(s)	49, 56, 363
MaeI	CTAG	2 cut(s)	252, 317
MaeIII	GTNAC	3 cut(s)	105, 284, 504
MalI	GATC	9 cut(s)	40, 144, 213, 228, 264, 336, 346, 393, 524
MboI	GATC	9 cut(s)	38, 142, 211, 226, 262, 334, 344, 391, 522
MboII	GAAGA	1 cut(s)	141
MfeI	CAATTG	1 cut(s)	526
MflI	RGATCY	2 cut(s)	38, 391
MluCI	AATT	4 cut(s)	9, 179, 237, 526
MmeI	TCCRAC	2 cut(s)	240, 398
MnlI	CCTC	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	133
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	70
MspI	CCGG	2 cut(s)	456, 462
MspR9I	CCNGG	3 cut(s)	157, 342, 432
MunI	CAATTG	1 cut(s)	526
MvaI	CCWGG	3 cut(s)	157, 342, 432
MwoI	GCNNNNNNNGC	2 cut(s)	30, 68
NdeII	GATC	9 cut(s)	38, 142, 211, 226, 262, 334, 344, 391, 522
NlaIII	CATG	5 cut(s)	69, 75, 86, 143, 351
NlaIV	GGNNCC	2 cut(s)	314, 460
NmuCI	GTSAC	3 cut(s)	105, 284, 504
PagI	TCATGA	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	275, 329
PfoI	TCCNGGA	1 cut(s)	340
PinAI	ACCGGT	1 cut(s)	461
PkrI	GCNGC	7 cut(s)	26, 29, 32, 46, 61, 64, 353
PsiI	TTATAA	1 cut(s)	303
Psp6I	CCWGG	3 cut(s)	155, 340, 430
PspGI	CCWGG	3 cut(s)	155, 340, 430
PspN4I	GGNNCC	2 cut(s)	314, 460
PstI	CTGCAG	3 cut(s)	46, 114, 385
PsuI	RGATCY	2 cut(s)	38, 391
RsaI	GTAC	3 cut(s)	429, 450, 460
RsaNI	GTAC	3 cut(s)	428, 449, 459
RseI	CAYNNNNRTG	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	7 cut(s)	25, 28, 31, 45, 60, 63, 352
Sau3AI	GATC	9 cut(s)	38, 142, 211, 226, 262, 334, 344, 391, 522
ScrFI	CCNGG	3 cut(s)	157, 342, 432
SetI	ASST	7 cut(s)	161, 168, 175, 187, 373, 433, 448
SfcI	CTRYAG	3 cut(s)	42, 110, 381
SmiMI	CAYNNNNRTG	1 cut(s)	70
Sse9I	AATT	4 cut(s)	9, 179, 237, 526
SsiI	CCGC	6 cut(s)	24, 27, 30, 59, 256, 453
SspMI	CTAG	2 cut(s)	252, 317
StyD4I	CCNGG	3 cut(s)	155, 340, 430
TaaI	ACNGT	1 cut(s)	483
TaqI	TCGA	2 cut(s)	229, 400
TasI	AATT	4 cut(s)	9, 179, 237, 526
TauI	GCSGC	4 cut(s)	27, 30, 33, 62
TfiI	GAWTC	2 cut(s)	275, 329
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	114, 286, 503
TseFI	GTSAC	3 cut(s)	105, 284, 504
TseI	GCWGC	3 cut(s)	44, 62, 351
Tsp45I	GTSAC	3 cut(s)	105, 284, 504
TspDTI	ATGAA	1 cut(s)	249
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	3 cut(s)	114, 286, 503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	2 cut(s)	252, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.