Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010011

Physical Location & Seq

Genomic Coordinates Forward (+)

18757937 .. 18758707

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g18160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTATTAATTTATCTGAACATCCTTATTCTCCCTAACTATTTTAATGAACTCTATAAAGCTACAAAAACTCAGTATTATAAATTCATCATGCAGAGAAGAAAGCCGAGGGGAAGCTTCAACGACATCGATGAATCGGCAGTAGTAAAGGCAGCTGCATGGGCATGGTTCGAGCGCGGTTCGTGTTCCTACAGCAAGTCGATCGTGCCGGAATTCGATTTAAGGAGGACTTGTCACGCTCCATATAAACCGTCCAGGTACAAGCTAGAAGCTATGGAAAATATAGCCAATATTAGTAGTAAAGAAGACACGGAATTTGTCAAGTTAGAATCTCCAAGCGTTACTACATCTAGTAACTCGCTTCTTGATACATATGAAATTGAAAGTATTTCTCGGAAATTGGATCAACTTATAGAGTTTAGTGGTGACAAAGACAAAGTTCGTAAGGGTTTTCTAGTTGGAGATGTTCTTGGTACAAAGAACACGAAAGAGTGCAGCAGAGGTTCGTACTCTGATCTCGAATACAGAGATAAATCCTCTTTACCAGTGAAACTACAAGTCCCCGAAGACGTTCGTCAACAAGAAAGTGTGCCGCTCATGGATGGTAACGCGAATCGGAGGAAGAAAAAGAAGAACGTTAGAGGAGGGTTCTGGCATAGGCATGCGGCGATATGTGGCAATAGTGAAGATGTTCTTAACACACAAGCTTTTGTGGTTAGTCGTCGGCGGCCAGAAAAGGGTGTATATGTACGTACCGGTACCGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

29.27

Weight (kDa)

9.4

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66190 AT5G37550
fragaria_vesca	FvH4_1g30203 FvH4_1g30203
malus_domestica	MD09G1270500.v1.1
prunus_persica	Prupe.3G166400_v2.0.a1
pyrus_communis	pycom09g18160 pycom17g26720
rosa_chinensis	RchiOBHm_Chr3g0491241
rosa_laevigata	RLG00000022848
rosa_multiflora	Rmu_sc0000293.1_g000037 Rmu_sc0014162.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393000 Rroxscaffold_6G00393070
rosa_rugosa	Rorug03G0248600
rosa_samantha	Rh3AG297700 Rh3BG334000 Rh3CG330700 Rh3DG331700
rosa_wichuraiana	Rw3G026230 Rw3G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
Acc65I	GGTACC	1 cut(s)	758
AccB1I	GGYRCC	1 cut(s)	758
AccBSI	CCGCTC	1 cut(s)	595
AccII	CGCG	2 cut(s)	177, 611
AciI	CCGC	4 cut(s)	177, 593, 665, 727
AclI	AACGTT	1 cut(s)	636
AclWI	GGATC	1 cut(s)	411
AcoI	YGGCCR	1 cut(s)	728
AcsI	RAATTY	3 cut(s)	83, 212, 314
AfaI	GTAC	6 cut(s)	260, 475, 509, 750, 754, 760
AfiI	CCNNNNNNNGG	1 cut(s)	737
AgeI	ACCGGT	2 cut(s)	755, 761
AgsI	TTSAA	2 cut(s)	121, 383
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	6 cut(s)	62, 117, 155, 265, 272, 707
AluI	AGCT	6 cut(s)	62, 117, 155, 265, 272, 707
AlwI	GGATC	1 cut(s)	411
AoxI	GGCC	1 cut(s)	728
ApeKI	GCWGC	3 cut(s)	152, 155, 495
ApoI	RAATTY	3 cut(s)	83, 212, 314
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AseI	ATTAAT	1 cut(s)	8
AsiGI	ACCGGT	2 cut(s)	755, 761
Asp700I	GAANNNNTTC	2 cut(s)	570, 690
Asp718I	GGTACC	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	758
BbsI	GAAGAC	2 cut(s)	312, 573
BbvI	GCAGC	3 cut(s)	142, 164, 507
BccI	CCATC	1 cut(s)	596
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	256
BfaI	CTAG	3 cut(s)	266, 351, 455
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	6 cut(s)	153, 156, 496, 593, 666, 728
BlsI	GCNGC	6 cut(s)	154, 157, 497, 594, 667, 729
Bme1390I	CCNGG	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	1 cut(s)	256
BoxI	GACNNNNGTC	1 cut(s)	573
BpiI	GAAGAC	2 cut(s)	312, 573
Bsa29I	ATCGAT	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	752
BsaJI	CCNNGG	1 cut(s)	107
BsaWI	WCCGGW	2 cut(s)	755, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse118I	RCCGGY	2 cut(s)	755, 761
Bse1I	ACTGG	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	256
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	2 cut(s)	21, 607
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	1 cut(s)	657
BseXI	GCAGC	3 cut(s)	142, 164, 507
BsgI	GTGCAG	1 cut(s)	514
Bsh1236I	CGCG	2 cut(s)	177, 611
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	730
BshNI	GGYRCC	1 cut(s)	758
BshTI	ACCGGT	2 cut(s)	755, 761
BshVI	ATCGAT	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	3 cut(s)	209, 756, 762
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmFI	GGGAC	1 cut(s)	545
BsnI	GGCC	1 cut(s)	730
Bsp143I	GATC	3 cut(s)	201, 403, 514
BspACI	CCGC	4 cut(s)	177, 593, 665, 727
BspANI	GGCC	1 cut(s)	730
BspCNI	CTCAG	1 cut(s)	85
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	2 cut(s)	177, 611
BspLI	GGNNCC	1 cut(s)	760
BspPI	GGATC	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	758
BsrBI	CCGCTC	1 cut(s)	595
BsrFI	RCCGGY	2 cut(s)	755, 761
BsrI	ACTGG	1 cut(s)	545
BssAI	RCCGGY	2 cut(s)	755, 761
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	3 cut(s)	201, 403, 514
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	21, 607
BstFNI	CGCG	2 cut(s)	177, 611
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	204, 406, 517
BstMBI	GATC	3 cut(s)	201, 403, 514
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	665
BstPAI	GACNNNNGTC	1 cut(s)	573
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	190
BstSNI	TACGTA	1 cut(s)	752
BstUI	CGCG	2 cut(s)	177, 611
BstV1I	GCAGC	3 cut(s)	142, 164, 507
BstV2I	GAAGAC	2 cut(s)	312, 573
Bsu15I	ATCGAT	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	730
BsuTUI	ATCGAT	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	21, 607
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	663
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	2 cut(s)	755, 761
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	6 cut(s)	259, 474, 508, 749, 753, 759
CspAI	ACCGGT	2 cut(s)	755, 761
CviAII	CATG	5 cut(s)	91, 159, 165, 598, 662
CviJI	RGCY	9 cut(s)	62, 106, 117, 155, 265, 272, 287, 707, 730
CviKI_1	RGCY	9 cut(s)	62, 106, 117, 155, 265, 272, 287, 707, 730
CviQI	GTAC	6 cut(s)	259, 474, 508, 749, 753, 759
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	3 cut(s)	203, 405, 516
DpnII	GATC	3 cut(s)	201, 403, 514
EaeI	YGGCCR	1 cut(s)	728
Eco105I	TACGTA	1 cut(s)	752
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	254
FaeI	CATG	5 cut(s)	94, 162, 168, 601, 665
FalI	AAGNNNNNCTT	4 cut(s)	214, 246, 678, 710
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	5 cut(s)	90, 158, 164, 597, 661
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	6 cut(s)	153, 156, 496, 593, 666, 728
FokI	GGATG	2 cut(s)	8, 614
Fsp4HI	GCNGC	6 cut(s)	153, 156, 496, 593, 666, 728
FspBI	CTAG	3 cut(s)	266, 351, 455
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	6 cut(s)	153, 156, 496, 593, 666, 728
HaeIII	GGCC	1 cut(s)	730
HapII	CCGG	3 cut(s)	209, 756, 762
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	5 cut(s)	94, 162, 168, 601, 665
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	578
HindII	GTYRAC	1 cut(s)	578
HindIII	AAGCTT	2 cut(s)	115, 705
HinfI	GANTC	3 cut(s)	134, 329, 613
HpaII	CCGG	3 cut(s)	209, 756, 762
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	578
Hpy188I	TCNGA	4 cut(s)	18, 396, 514, 618
Hpy188III	TCNNGA	2 cut(s)	365, 518
Hpy8I	GTNNAC	1 cut(s)	578
Hpy99I	CGWCG	1 cut(s)	726
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4IV	ACGT	3 cut(s)	570, 636, 751
HpyCH4V	TGCA	3 cut(s)	94, 158, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	3 cut(s)	570, 636, 751
Hsp92II	CATG	5 cut(s)	94, 162, 168, 601, 665
HspAI	GCGC	1 cut(s)	175
KpnI	GGTACC	1 cut(s)	762
Kzo9I	GATC	3 cut(s)	201, 403, 514
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	6 cut(s)	222, 241, 268, 558, 637, 744
Lsp1109I	GCAGC	3 cut(s)	142, 164, 507
MaeI	CTAG	3 cut(s)	266, 351, 455
MaeII	ACGT	3 cut(s)	570, 636, 751
MaeIII	GTNAC	5 cut(s)	233, 340, 353, 425, 605
MalI	GATC	3 cut(s)	203, 405, 516
MbiI	CCGCTC	1 cut(s)	595
MboI	GATC	3 cut(s)	201, 403, 514
MboII	GAAGA	6 cut(s)	111, 317, 578, 634, 643, 698
MluCI	AATT	6 cut(s)	9, 83, 212, 314, 378, 398
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	7 cut(s)	102, 219, 494, 547, 612, 635, 638
MroXI	GAANNNNTTC	2 cut(s)	570, 690
MseI	TTAA	5 cut(s)	8, 45, 221, 696, 769
MslI	CAYNNNNRTG	2 cut(s)	163, 660
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	3 cut(s)	209, 756, 762
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	2 cut(s)	177, 611
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	3 cut(s)	201, 403, 514
NlaIII	CATG	5 cut(s)	94, 162, 168, 601, 665
NlaIV	GGNNCC	1 cut(s)	760
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	233, 425
NspI	RCATGY	1 cut(s)	665
PaeI	GCATGC	1 cut(s)	665
PdmI	GAANNNNTTC	2 cut(s)	570, 690
PfeI	GAWTC	3 cut(s)	134, 329, 613
PinAI	ACCGGT	2 cut(s)	755, 761
PkrI	GCNGC	6 cut(s)	154, 157, 497, 594, 667, 729
Ple19I	CGATCG	1 cut(s)	204
Ppu21I	YACGTR	1 cut(s)	752
PshAI	GACNNNNGTC	1 cut(s)	573
PshBI	ATTAAT	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	81
Psp1406I	AACGTT	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	760
PvuI	CGATCG	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	6 cut(s)	260, 475, 509, 750, 754, 760
RsaNI	GTAC	6 cut(s)	259, 474, 508, 749, 753, 759
RseI	CAYNNNNRTG	2 cut(s)	163, 660
SaqAI	TTAA	5 cut(s)	8, 45, 221, 696, 769
SatI	GCNGC	6 cut(s)	153, 156, 496, 593, 666, 728
Sau3AI	GATC	3 cut(s)	201, 403, 514
ScrFI	CCNGG	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	190
SmiMI	CAYNNNNRTG	2 cut(s)	163, 660
SnaBI	TACGTA	1 cut(s)	752
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	6 cut(s)	9, 83, 212, 314, 378, 398
SsiI	CCGC	4 cut(s)	177, 593, 665, 727
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	3 cut(s)	266, 351, 455
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	252
TaiI	ACGT	3 cut(s)	573, 639, 754
TaqI	TCGA	5 cut(s)	129, 171, 200, 216, 519
TasI	AATT	6 cut(s)	9, 83, 212, 314, 378, 398
TauI	GCSGC	3 cut(s)	595, 668, 730
TfiI	GAWTC	3 cut(s)	134, 329, 613
Tru1I	TTAA	5 cut(s)	8, 45, 221, 696, 769
Tru9I	TTAA	5 cut(s)	8, 45, 221, 696, 769
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	2 cut(s)	233, 425
TseI	GCWGC	3 cut(s)	152, 155, 495
Tsp45I	GTSAC	2 cut(s)	233, 425
TspDTI	ATGAA	4 cut(s)	63, 76, 147, 390
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	552
VspI	ATTAAT	1 cut(s)	8
XapI	RAATTY	3 cut(s)	83, 212, 314
XceI	RCATGY	1 cut(s)	665
XmnI	GAANNNNTTC	2 cut(s)	570, 690
XspI	CTAG	3 cut(s)	266, 351, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.