Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010011

Physical Location & Seq

Genomic Coordinates Forward (+)

13243311 .. 13245207

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022848

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGAGAATTAGGAAGCAGAGCAGAGGTGGCGATGAATCAGCCTTGGTAAAGGCGGCCGCATGGGCATGGTATGAGCATGGGACTGGATTAGAAGGCAAGTCACGGCAGGAATTTGATATCAGAAGAACTTTTCATGATCCTAAACCATCCAGGTTCAAGCTAGAAGCCAAGAAATTAGCCGAACAAGGCAGTAGAGTTTTTGATGAAGGGTCAAGTCCGGGAACTAGTGGGAGTGCACAGACTGTTGATGGTCATTCACTTCTTGATAGATATGAAATTGAGAGTATTTCTAGGCAGTTGGCTCAACTTATAGAGTCTAGTGGTGACAAAGGCACAGTTTATAATGAGGGGTTCCTAGTTGGAGATCGTCTTACTAAACAGTACGACCACTCTAATTTTGGATACGGTAGTAGATGCTCACCGCCGCCGAAGTTACAAGCTCCGACTTCTGCAGTTGGAGATCTTCGTCAAAAAGGAAGTGTAGCATTATCAGATGGTGACTATACAAATCGCAGGAGGAAGAAAACGAGCAACTACTTTAGAGGGTTTTGGCAAAGGCATGTAGTGATATGCGGTTCAAGCACTCATAAAGATGTAATTCTAGGGACAAGATCCTTTGTGGATAATCGGGGGCAGCAGCAGAACCCGGAAAAGCGGAAAGCATACTCGCCTGTACCAGTGCGTAACGGGCAGGGCCTTGACGGCAACGGCAGTGGCTGCAGACAATCTGAAAGGAGAGGTGATGGTCCTGTTGGAAGCCGAGATTGCGGCAGACAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

28.94

Weight (kDa)

9.59

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66190 AT5G37550
fragaria_vesca	FvH4_1g30203 FvH4_1g30203
malus_domestica	MD09G1270500.v1.1
prunus_persica	Prupe.3G166400_v2.0.a1
pyrus_communis	pycom09g18160 pycom17g26720
rosa_chinensis	RchiOBHm_Chr3g0491241
rosa_laevigata	RLG00000022848
rosa_multiflora	Rmu_sc0000293.1_g000037 Rmu_sc0014162.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393000 Rroxscaffold_6G00393070
rosa_rugosa	Rorug03G0248600
rosa_samantha	Rh3AG297700 Rh3BG334000 Rh3CG330700 Rh3DG331700
rosa_wichuraiana	Rw3G026230 Rw3G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AciI	CCGC	7 cut(s)	56, 60, 425, 428, 576, 658, 771
AclWI	GGATC	2 cut(s)	134, 609
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	113
AfaI	GTAC	2 cut(s)	386, 678
AgsI	TTSAA	2 cut(s)	160, 582
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	2 cut(s)	163, 443
AluI	AGCT	2 cut(s)	163, 443
Alw21I	GWGCWC	1 cut(s)	241
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	2 cut(s)	134, 609
AlwNI	CAGNNNCTG	1 cut(s)	720
AoxI	GGCC	2 cut(s)	57, 697
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	637, 640, 720
ApoI	RAATTY	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	697, 749
AsuC2I	CCSGG	2 cut(s)	222, 650
AsuHPI	GGTGA	4 cut(s)	338, 414, 512, 755
AvaII	GGWCC	1 cut(s)	749
BaeGI	GKGCMC	1 cut(s)	241
BaeI	ACNNNNGTAYC	2 cut(s)	397, 430
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	649, 652, 707
BccI	CCATC	4 cut(s)	157, 245, 491, 740
BceAI	ACGGC	3 cut(s)	122, 721, 727
BciT130I	CCWGG	1 cut(s)	154
BciVI	GTATCC	1 cut(s)	398
BcnI	CCSGG	2 cut(s)	222, 650
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
BfmI	CTRYAG	2 cut(s)	453, 721
BfuI	GTATCC	1 cut(s)	398
BglI	GCCNNNNNGGC	2 cut(s)	65, 705
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	7 cut(s)	57, 60, 428, 638, 641, 721, 772
BlsI	GCNGC	7 cut(s)	58, 61, 429, 639, 642, 722, 773
Bme1390I	CCNGG	3 cut(s)	154, 222, 650
Bme18I	GGWCC	1 cut(s)	749
BmgT120I	GGNCC	2 cut(s)	697, 749
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	3 cut(s)	154, 222, 650
BmsI	GCATC	1 cut(s)	407
BpuMI	CCSGG	2 cut(s)	222, 650
BsaJI	CCNNGG	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	91, 680
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	91, 680
BseSI	GKGCMC	1 cut(s)	241
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	649, 652, 707
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	59, 699
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	221, 650
BslFI	GGGAC	2 cut(s)	97, 622
BsmFI	GGGAC	2 cut(s)	97, 622
BsnI	GGCC	2 cut(s)	59, 699
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	4 cut(s)	139, 367, 463, 614
BspACI	CCGC	7 cut(s)	56, 60, 425, 428, 576, 658, 771
BspANI	GGCC	2 cut(s)	59, 699
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	356
BspMAI	CTGCAG	2 cut(s)	457, 725
BspPI	GGATC	2 cut(s)	134, 609
BsrI	ACTGG	2 cut(s)	91, 680
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	4 cut(s)	139, 367, 463, 614
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	4 cut(s)	247, 340, 384, 410
BstAPI	GCANNNNNTGC	1 cut(s)	720
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	4 cut(s)	142, 370, 466, 617
BstMBI	GATC	4 cut(s)	139, 367, 463, 614
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 65, 582, 691, 705, 720, 768
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	3 cut(s)	152, 220, 648
BstSFI	CTRYAG	2 cut(s)	453, 721
BstSLI	GKGCMC	1 cut(s)	241
BstV1I	GCAGC	3 cut(s)	649, 652, 707
BstX2I	RGATCY	2 cut(s)	463, 614
BstYI	RGATCY	2 cut(s)	463, 614
BstZI	CGGCCG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	59, 699
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	149
BtsI	GCAGTG	1 cut(s)	721
BtsIMutI	CAGTG	2 cut(s)	687, 721
CaiI	CAGNNNCTG	1 cut(s)	720
CciI	TCATGA	1 cut(s)	136
CciNI	GCGGCCGC	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	697, 749
Csp6I	GTAC	2 cut(s)	385, 677
CspCI	CAANNNNNGTGG	2 cut(s)	697, 732
CviAII	CATG	5 cut(s)	63, 69, 80, 137, 563
CviQI	GTAC	2 cut(s)	385, 677
DpnI	GATC	4 cut(s)	141, 369, 465, 616
DpnII	GATC	4 cut(s)	139, 367, 463, 614
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	749
Eco52I	CGGCCG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	5 cut(s)	66, 72, 83, 140, 566
FaqI	GGGAC	2 cut(s)	97, 622
FatI	CATG	5 cut(s)	62, 68, 79, 136, 562
Fnu4HI	GCNGC	7 cut(s)	57, 60, 428, 638, 641, 721, 772
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	7 cut(s)	57, 60, 428, 638, 641, 721, 772
FspBI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
GluI	GCNGC	7 cut(s)	57, 60, 428, 638, 641, 721, 772
HaeIII	GGCC	2 cut(s)	59, 699
HapII	CCGG	2 cut(s)	221, 650
Hin1II	CATG	5 cut(s)	66, 72, 83, 140, 566
HinfI	GANTC	2 cut(s)	38, 317
HpaII	CCGG	2 cut(s)	221, 650
HphI	GGTGA	4 cut(s)	338, 414, 512, 755
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	4 cut(s)	125, 447, 496, 733
Hpy188III	TCNNGA	2 cut(s)	137, 266
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	89, 203
HpyCH4III	ACNGT	4 cut(s)	247, 340, 384, 410
HpyCH4V	TGCA	3 cut(s)	239, 455, 723
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 65, 582, 691, 705, 720, 768
Hsp92II	CATG	5 cut(s)	66, 72, 83, 140, 566
Kzo9I	GATC	4 cut(s)	139, 367, 463, 614
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	3 cut(s)	649, 652, 707
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
MaeIII	GTNAC	5 cut(s)	102, 326, 435, 500, 686
MalI	GATC	4 cut(s)	141, 369, 465, 616
MboI	GATC	4 cut(s)	139, 367, 463, 614
MboII	GAAGA	3 cut(s)	138, 458, 535
MflI	RGATCY	2 cut(s)	463, 614
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	6 cut(s)	9, 113, 176, 279, 397, 600
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	4 cut(s)	343, 439, 470, 736
MnlI	CCTC	5 cut(s)	20, 343, 513, 539, 734
MslI	CAYNNNNRTG	2 cut(s)	67, 594
MspI	CCGG	2 cut(s)	221, 650
MspR9I	CCNGG	3 cut(s)	154, 222, 650
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	7 cut(s)	30, 65, 582, 691, 705, 720, 768
NciI	CCSGG	2 cut(s)	222, 650
NdeII	GATC	4 cut(s)	139, 367, 463, 614
NlaIII	CATG	5 cut(s)	66, 72, 83, 140, 566
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	3 cut(s)	102, 326, 500
NotI	GCGGCCGC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	566
PagI	TCATGA	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	38
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	7 cut(s)	58, 61, 429, 639, 642, 722, 773
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	356
PspPI	GGNCC	2 cut(s)	697, 749
PstI	CTGCAG	2 cut(s)	457, 725
PstNI	CAGNNNCTG	1 cut(s)	720
PsuI	RGATCY	2 cut(s)	463, 614
RsaI	GTAC	2 cut(s)	386, 678
RsaNI	GTAC	2 cut(s)	385, 677
RseI	CAYNNNNRTG	2 cut(s)	67, 594
SatI	GCNGC	7 cut(s)	57, 60, 428, 638, 641, 721, 772
Sau3AI	GATC	4 cut(s)	139, 367, 463, 614
Sau96I	GGNCC	2 cut(s)	697, 749
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	3 cut(s)	154, 222, 650
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	5 cut(s)	31, 158, 165, 445, 745
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	2 cut(s)	453, 721
SinI	GGWCC	1 cut(s)	749
SmiMI	CAYNNNNRTG	2 cut(s)	67, 594
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	6 cut(s)	9, 113, 176, 279, 397, 600
SsiI	CCGC	7 cut(s)	56, 60, 425, 428, 576, 658, 771
SspMI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
StyD4I	CCNGG	3 cut(s)	152, 220, 648
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	4 cut(s)	247, 340, 384, 410
TasI	AATT	6 cut(s)	9, 113, 176, 279, 397, 600
TauI	GCSGC	4 cut(s)	59, 62, 430, 774
TfiI	GAWTC	1 cut(s)	38
TscAI	CASTG	2 cut(s)	687, 721
TseFI	GTSAC	3 cut(s)	102, 326, 500
TseI	GCWGC	3 cut(s)	637, 640, 720
Tsp45I	GTSAC	3 cut(s)	102, 326, 500
TspDTI	ATGAA	4 cut(s)	51, 125, 222, 291
TspRI	CASTG	2 cut(s)	687, 721
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	749
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XspI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.