Rroxscaffold_6G00393070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010011
Physical Location & Seq
Forward (+)
12855621 .. 12856367
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393070.1

Sequence Viewer

Length: 747 bp
ATGGAGAGAATTAGGAAGCAGAGCAGAGGTGGCGATGAATCGGCCTTGGTAAAGGCGGCCGCATGGGCATGGTATGAGCGTGGGACTGGATTAGAAGGCAAGTCACGGCAGGAATTTGATATCAGAAGAACTTTTCATGATCCTAAACCATCCAGGTTCAAGCTAGAAGCTAAGAAATTAGCCGAACAAGGCAGTAGAGTTTTTGATGAAGGGTCAAGTCCGGGAACTAGTGGGAGTGTACAGACTGTTGATGATCATTCACTTCTTGATAGATATGAAATTGAGAGTATTTCTAGGCGGTTGGATCAACTTATAGAGTCTAGTGGTGACAAAGGGACAGTTTATAATAAGGGGTTCCTAGTTGGAGATCGTCTTGCTAAACAGTATGACCACTCTAATCTTGGATACGGTAGTAGATGCTCACTGCCGCCGAAGTTCCAAGCTCCTACGTCTGCAGTTGGAGATCTTCGTCGAAAAGGAAGTGTAGCATTATCAGATGGTGACTACACGAATCGCAGGAGGAAGAAAACGAGCAACATCTTTAAAGGGTTTTGGCAAAGGCATGTAGTGATATGCGGTTCAAGTACTCATAAAGATGTAATTCTAGGGACAAGATCTTTTGTGGATAATCGGGGGCAGCAGCAGAACCCGGAAAAGCGGAAAGCATACTCGCCGGTACCAGTGGTAAAGTTGGCCAACTGTCGGCCAAGGGCCAGTGGCCGTCACACACGCCTTGTGATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.85

Weight (kDa)

10.06

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
Acc65I GGTACC 1 cut(s) 676
AccB1I GGYRCC 1 cut(s) 676
AciI CCGC 6 cut(s) 56, 60, 298, 428, 576, 658
AclWI GGATC 2 cut(s) 134, 312
AcoI YGGCCR 4 cut(s) 57, 693, 704, 718
AcsI RAATTY 1 cut(s) 113
AfaI GTAC 3 cut(s) 240, 586, 678
AfiI CCNNNNNNNGG 1 cut(s) 702
AgsI TTSAA 2 cut(s) 160, 582
AhlI ACTAGT 1 cut(s) 227
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 3 cut(s) 163, 170, 443
AluI AGCT 3 cut(s) 163, 170, 443
AlwI GGATC 2 cut(s) 134, 312
AoxI GGCC 6 cut(s) 42, 57, 693, 704, 711, 718
ApeKI GCWGC 2 cut(s) 637, 640
ApoI RAATTY 1 cut(s) 113
Asp718I GGTACC 1 cut(s) 676
AspS9I GGNCC 1 cut(s) 711
AsuC2I CCSGG 2 cut(s) 222, 650
AsuHPI GGTGA 2 cut(s) 338, 512
BaeI ACNNNNGTAYC 2 cut(s) 397, 430
BalI TGGCCA 1 cut(s) 695
BanI GGYRCC 1 cut(s) 676
BbvI GCAGC 2 cut(s) 649, 652
BccI CCATC 2 cut(s) 157, 491
BceAI ACGGC 2 cut(s) 122, 705
BciT130I CCWGG 1 cut(s) 154
BciVI GTATCC 1 cut(s) 398
BclI TGATCA 2 cut(s) 253, 738
BcnI CCSGG 2 cut(s) 222, 650
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 6 cut(s) 164, 228, 294, 321, 359, 605
BfmI CTRYAG 1 cut(s) 453
BfuI GTATCC 1 cut(s) 398
BglI GCCNNNNNGGC 1 cut(s) 65
BglII AGATCT 2 cut(s) 463, 614
BisI GCNGC 5 cut(s) 57, 60, 428, 638, 641
BlsI GCNGC 5 cut(s) 58, 61, 429, 639, 642
BmcAI AGTACT 1 cut(s) 586
Bme1390I CCNGG 3 cut(s) 154, 222, 650
BmgT120I GGNCC 1 cut(s) 711
BmiI GGNNCC 2 cut(s) 356, 678
BmrFI CCNGG 3 cut(s) 154, 222, 650
BmsI GCATC 1 cut(s) 407
BpuMI CCSGG 2 cut(s) 222, 650
BsaJI CCNNGG 2 cut(s) 45, 707
Bsc4I CCNNNNNNNGG 1 cut(s) 702
Bse118I RCCGGY 1 cut(s) 673
Bse1I ACTGG 3 cut(s) 91, 680, 714
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 45, 707
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 702
BseNI ACTGG 3 cut(s) 91, 680, 714
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 649, 652
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 6 cut(s) 44, 59, 695, 706, 713, 720
BshNI GGYRCC 1 cut(s) 676
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 3 cut(s) 221, 650, 674
BslFI GGGAC 3 cut(s) 97, 349, 622
BslI CCNNNNNNNGG 1 cut(s) 702
BsmFI GGGAC 3 cut(s) 97, 349, 622
BsnI GGCC 6 cut(s) 44, 59, 695, 706, 713, 720
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 7 cut(s) 139, 253, 304, 367, 463, 614, 738
BspACI CCGC 6 cut(s) 56, 60, 298, 428, 576, 658
BspANI GGCC 6 cut(s) 44, 59, 695, 706, 713, 720
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 356, 678
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 2 cut(s) 134, 312
BspT107I GGYRCC 1 cut(s) 676
BsrFI RCCGGY 1 cut(s) 673
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 3 cut(s) 91, 680, 714
BssAI RCCGGY 1 cut(s) 673
BssECI CCNNGG 2 cut(s) 45, 707
BssMI GATC 7 cut(s) 139, 253, 304, 367, 463, 614, 738
BssT1I CCWWGG 2 cut(s) 45, 707
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 5 cut(s) 247, 340, 384, 410, 701
BstAUI TGTACA 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 149
BstKTI GATC 7 cut(s) 142, 256, 307, 370, 466, 617, 741
BstMBI GATC 7 cut(s) 139, 253, 304, 367, 463, 614, 738
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 30, 65
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 3 cut(s) 152, 220, 648
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 2 cut(s) 649, 652
BstX2I RGATCY 2 cut(s) 463, 614
BstYI RGATCY 2 cut(s) 463, 614
BstZI CGGCCG 1 cut(s) 57
BsuI GTATCC 1 cut(s) 398
BsuRI GGCC 6 cut(s) 44, 59, 695, 706, 713, 720
BtgZI GCGATG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 3 cut(s) 422, 687, 721
CciI TCATGA 1 cut(s) 136
CciNI GCGGCCGC 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 673
Cfr13I GGNCC 1 cut(s) 711
Csp6I GTAC 3 cut(s) 239, 585, 677
CviAII CATG 4 cut(s) 63, 69, 137, 563
CviQI GTAC 3 cut(s) 239, 585, 677
DdeI CTNAG 1 cut(s) 171
DpnI GATC 7 cut(s) 141, 255, 306, 369, 465, 616, 740
DpnII GATC 7 cut(s) 139, 253, 304, 367, 463, 614, 738
DraI TTTAAA 1 cut(s) 544
EaeI YGGCCR 4 cut(s) 57, 693, 704, 718
EagI CGGCCG 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 2 cut(s) 45, 707
Eco32I GATATC 1 cut(s) 121
Eco52I CGGCCG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 152
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 45, 707
ErhI CCWWGG 2 cut(s) 45, 707
FaeI CATG 4 cut(s) 66, 72, 140, 566
FaqI GGGAC 3 cut(s) 97, 349, 622
FatI CATG 4 cut(s) 62, 68, 136, 562
FbaI TGATCA 2 cut(s) 253, 738
Fnu4HI GCNGC 5 cut(s) 57, 60, 428, 638, 641
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 5 cut(s) 57, 60, 428, 638, 641
FspBI CTAG 6 cut(s) 164, 228, 294, 321, 359, 605
GluI GCNGC 5 cut(s) 57, 60, 428, 638, 641
HaeIII GGCC 6 cut(s) 44, 59, 695, 706, 713, 720
HapII CCGG 3 cut(s) 221, 650, 674
Hin1II CATG 4 cut(s) 66, 72, 140, 566
HinfI GANTC 3 cut(s) 38, 317, 511
HpaII CCGG 3 cut(s) 221, 650, 674
HphI GGTGA 2 cut(s) 338, 512
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 125, 496
Hpy188III TCNNGA 2 cut(s) 137, 266
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 2 cut(s) 89, 203
HpyCH4III ACNGT 5 cut(s) 247, 340, 384, 410, 701
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 1 cut(s) 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 65
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 449
Hsp92II CATG 4 cut(s) 66, 72, 140, 566
KpnI GGTACC 1 cut(s) 680
Ksp22I TGATCA 2 cut(s) 253, 738
Kzo9I GATC 7 cut(s) 139, 253, 304, 367, 463, 614, 738
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 2 cut(s) 649, 652
LweI GCATC 1 cut(s) 407
MaeI CTAG 6 cut(s) 164, 228, 294, 321, 359, 605
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 4 cut(s) 102, 326, 500, 722
MalI GATC 7 cut(s) 141, 255, 306, 369, 465, 616, 740
MboI GATC 7 cut(s) 139, 253, 304, 367, 463, 614, 738
MboII GAAGA 3 cut(s) 138, 458, 535
MfeI CAATTG 1 cut(s) 742
MflI RGATCY 2 cut(s) 463, 614
MlsI TGGCCA 1 cut(s) 695
MluCI AATT 6 cut(s) 9, 113, 176, 279, 600, 742
MluNI TGGCCA 1 cut(s) 695
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 3 cut(s) 282, 343, 439
MnlI CCTC 2 cut(s) 20, 513
Mox20I TGGCCA 1 cut(s) 695
MscI TGGCCA 1 cut(s) 695
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 2 cut(s) 67, 594
Msp20I TGGCCA 1 cut(s) 695
MspI CCGG 3 cut(s) 221, 650, 674
MspR9I CCNGG 3 cut(s) 154, 222, 650
MunI CAATTG 1 cut(s) 742
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 30, 65
NciI CCSGG 2 cut(s) 222, 650
NdeII GATC 7 cut(s) 139, 253, 304, 367, 463, 614, 738
NlaIII CATG 4 cut(s) 66, 72, 140, 566
NlaIV GGNNCC 2 cut(s) 356, 678
NmuCI GTSAC 4 cut(s) 102, 326, 500, 722
NotI GCGGCCGC 1 cut(s) 57
NspI RCATGY 1 cut(s) 566
PagI TCATGA 1 cut(s) 136
PfeI GAWTC 2 cut(s) 38, 511
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 5 cut(s) 58, 61, 429, 639, 642
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PsiI TTATAA 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 356, 678
PspPI GGNCC 1 cut(s) 711
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 2 cut(s) 463, 614
RsaI GTAC 3 cut(s) 240, 586, 678
RsaNI GTAC 3 cut(s) 239, 585, 677
RseI CAYNNNNRTG 2 cut(s) 67, 594
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 5 cut(s) 57, 60, 428, 638, 641
Sau3AI GATC 7 cut(s) 139, 253, 304, 367, 463, 614, 738
Sau96I GGNCC 1 cut(s) 711
ScaI AGTACT 1 cut(s) 586
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 3 cut(s) 154, 222, 650
SetI ASST 6 cut(s) 31, 158, 165, 172, 445, 452
SfaNI GCATC 1 cut(s) 407
SfcI CTRYAG 1 cut(s) 453
SmiMI CAYNNNNRTG 2 cut(s) 67, 594
SpeI ACTAGT 1 cut(s) 227
Sse9I AATT 6 cut(s) 9, 113, 176, 279, 600, 742
SsiI CCGC 6 cut(s) 56, 60, 298, 428, 576, 658
SspMI CTAG 6 cut(s) 164, 228, 294, 321, 359, 605
StyD4I CCNGG 3 cut(s) 152, 220, 648
StyI CCWWGG 2 cut(s) 45, 707
TaaI ACNGT 5 cut(s) 247, 340, 384, 410, 701
TaiI ACGT 1 cut(s) 452
TaqI TCGA 1 cut(s) 472
TasI AATT 6 cut(s) 9, 113, 176, 279, 600, 742
TatI WGTACW 2 cut(s) 238, 584
TauI GCSGC 3 cut(s) 59, 62, 430
TfiI GAWTC 2 cut(s) 38, 511
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 3 cut(s) 429, 687, 721
TseFI GTSAC 4 cut(s) 102, 326, 500, 722
TseI GCWGC 2 cut(s) 637, 640
Tsp45I GTSAC 4 cut(s) 102, 326, 500, 722
TspDTI ATGAA 4 cut(s) 51, 125, 222, 291
TspRI CASTG 3 cut(s) 429, 687, 721
XapI RAATTY 1 cut(s) 113
XceI RCATGY 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XspI CTAG 6 cut(s) 164, 228, 294, 321, 359, 605
ZrmI AGTACT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.