Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010011

Physical Location & Seq

Genomic Coordinates Reverse (-)

36359127 .. 36360528

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG297700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGAGAATTAGGAAGCAGAGCCGAGGTGGCGATGAATTGGCCTTGGTAAAGGCGGCCGCATGGGCATGGTATGAGCATGGGACTGGATTAGAAGGCAAGTCACTGCAGGAATTTGATATCAGAAGAACTTTTCATGATCCTATACCATCCAGGTTCAAGCTAGAAGCCAAGAAATTAGCCGAACAAGGCAGTAGAGTTTTTGATGAAGGGTCAAGTCCGGGAACTAGTGGGAGTGTACAGACTGTTGATCATCATTCACTTCTTGATAGATATGAAATTGAGAGTATTTCTAGGCGGTTGGATCAACTTATAGAGTCTAGTGGTGACAAAGGCACAGTTTATAATAAGGGGTTCCTAGTTGGAGATCGTCTTGCTAAACTGTACGACCACTCTAATCTTGGATGCGGTAGTAGATGCTCACCGCCGCCAAAGTTACAAGTTCCGACGTCTGCAGTTGAAGATCTTCATCGAAATGGAAATGTAGCATTATCAGATGGTGACTACACAAATCGCAGGAGGAAGAAAACGAGCAACAACTTTAGAGGGTTTTGGCAAAGGCATGTAGTGATATGCGGTTCAAGTACTCATAAAGATGTAATTCTAGGGACAAGATCTTTTGTGGATAATCGGGGGCAGCAGCAGAACCCGGAAAAGTGGAAAGCATACTCGCCGGTACCAGTGGTAAAGTTGGCCAACCGTCGGCCGAGGGCCAGTGGCCATCACAGACGCCTTGTGATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.94

Weight (kDa)

9.86

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66190 AT5G37550
fragaria_vesca	FvH4_1g30203 FvH4_1g30203
malus_domestica	MD09G1270500.v1.1
prunus_persica	Prupe.3G166400_v2.0.a1
pyrus_communis	pycom09g18160 pycom17g26720
rosa_chinensis	RchiOBHm_Chr3g0491241
rosa_laevigata	RLG00000022848
rosa_multiflora	Rmu_sc0000293.1_g000037 Rmu_sc0014162.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393000 Rroxscaffold_6G00393070
rosa_rugosa	Rorug03G0248600
rosa_samantha	Rh3AG297700 Rh3BG334000 Rh3CG330700 Rh3DG331700
rosa_wichuraiana	Rw3G026230 Rw3G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AatII	GACGTC	1 cut(s)	452
Acc65I	GGTACC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	676
AciI	CCGC	7 cut(s)	56, 60, 298, 408, 425, 428, 576
AclWI	GGATC	2 cut(s)	134, 312
AcoI	YGGCCR	4 cut(s)	57, 693, 704, 718
AcsI	RAATTY	1 cut(s)	113
AcyI	GRCGYC	2 cut(s)	449, 730
AfaI	GTAC	4 cut(s)	240, 386, 586, 678
AfiI	CCNNNNNNNGG	1 cut(s)	702
AgsI	TTSAA	3 cut(s)	160, 461, 582
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
AlwI	GGATC	2 cut(s)	134, 312
AoxI	GGCC	6 cut(s)	42, 57, 693, 704, 711, 718
ApeKI	GCWGC	2 cut(s)	637, 640
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	465
Asp718I	GGTACC	1 cut(s)	676
AspS9I	GGNCC	1 cut(s)	711
AsuC2I	CCSGG	2 cut(s)	222, 650
AsuHPI	GGTGA	3 cut(s)	338, 414, 512
BalI	TGGCCA	2 cut(s)	695, 720
BanI	GGYRCC	1 cut(s)	676
BbvI	GCAGC	2 cut(s)	649, 652
BccI	CCATC	3 cut(s)	157, 491, 729
BciT130I	CCWGG	1 cut(s)	154
BclI	TGATCA	2 cut(s)	250, 738
BcnI	CCSGG	2 cut(s)	222, 650
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
BfmI	CTRYAG	2 cut(s)	107, 453
BglI	GCCNNNNNGGC	2 cut(s)	30, 65
BglII	AGATCT	2 cut(s)	463, 614
BisI	GCNGC	5 cut(s)	57, 60, 428, 638, 641
BlsI	GCNGC	5 cut(s)	58, 61, 429, 639, 642
BmcAI	AGTACT	1 cut(s)	586
Bme1390I	CCNGG	3 cut(s)	154, 222, 650
BmgT120I	GGNCC	1 cut(s)	711
BmiI	GGNNCC	2 cut(s)	356, 678
BmrFI	CCNGG	3 cut(s)	154, 222, 650
BmsI	GCATC	2 cut(s)	395, 407
BpuMI	CCSGG	2 cut(s)	222, 650
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	2 cut(s)	449, 730
BsaJI	CCNNGG	3 cut(s)	25, 45, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	702
Bse118I	RCCGGY	1 cut(s)	673
Bse1I	ACTGG	3 cut(s)	91, 680, 714
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	3 cut(s)	25, 45, 707
BseGI	GGATG	2 cut(s)	149, 410
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	702
BseNI	ACTGG	3 cut(s)	91, 680, 714
BseX3I	CGGCCG	2 cut(s)	57, 704
BseXI	GCAGC	2 cut(s)	649, 652
Bsh1285I	CGRYCG	2 cut(s)	60, 707
BshFI	GGCC	6 cut(s)	44, 59, 695, 706, 713, 720
BshNI	GGYRCC	1 cut(s)	676
BsiEI	CGRYCG	2 cut(s)	60, 707
BsiSI	CCGG	3 cut(s)	221, 650, 674
BslFI	GGGAC	2 cut(s)	97, 622
BslI	CCNNNNNNNGG	1 cut(s)	702
BsmFI	GGGAC	2 cut(s)	97, 622
BsnI	GGCC	6 cut(s)	44, 59, 695, 706, 713, 720
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	7 cut(s)	139, 250, 304, 367, 463, 614, 738
BspACI	CCGC	7 cut(s)	56, 60, 298, 408, 425, 428, 576
BspANI	GGCC	6 cut(s)	44, 59, 695, 706, 713, 720
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	356, 678
BspMAI	CTGCAG	2 cut(s)	111, 457
BspPI	GGATC	2 cut(s)	134, 312
BspT107I	GGYRCC	1 cut(s)	676
BsrFI	RCCGGY	1 cut(s)	673
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	3 cut(s)	91, 680, 714
BssAI	RCCGGY	1 cut(s)	673
BssECI	CCNNGG	3 cut(s)	25, 45, 707
BssMI	GATC	7 cut(s)	139, 250, 304, 367, 463, 614, 738
BssNI	GRCGYC	2 cut(s)	449, 730
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	4 cut(s)	247, 340, 384, 701
BstACI	GRCGYC	2 cut(s)	449, 730
BstAUI	TGTACA	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	149, 410
BstKTI	GATC	7 cut(s)	142, 253, 307, 370, 466, 617, 741
BstMBI	GATC	7 cut(s)	139, 250, 304, 367, 463, 614, 738
BstMCI	CGRYCG	2 cut(s)	60, 707
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 65
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	3 cut(s)	152, 220, 648
BstSFI	CTRYAG	2 cut(s)	107, 453
BstV1I	GCAGC	2 cut(s)	649, 652
BstX2I	RGATCY	2 cut(s)	463, 614
BstYI	RGATCY	2 cut(s)	463, 614
BstZI	CGGCCG	2 cut(s)	57, 704
BsuRI	GGCC	6 cut(s)	44, 59, 695, 706, 713, 720
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	149, 410
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	3 cut(s)	104, 687, 721
CciI	TCATGA	1 cut(s)	136
CciNI	GCGGCCGC	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	673
Cfr13I	GGNCC	1 cut(s)	711
CseI	GACGC	1 cut(s)	738
Csp6I	GTAC	4 cut(s)	239, 385, 585, 677
CviAII	CATG	5 cut(s)	63, 69, 80, 137, 563
CviQI	GTAC	4 cut(s)	239, 385, 585, 677
DpnI	GATC	7 cut(s)	141, 252, 306, 369, 465, 616, 740
DpnII	GATC	7 cut(s)	139, 250, 304, 367, 463, 614, 738
EaeI	YGGCCR	4 cut(s)	57, 693, 704, 718
EagI	CGGCCG	2 cut(s)	57, 704
EclXI	CGGCCG	2 cut(s)	57, 704
Eco130I	CCWWGG	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	121
Eco52I	CGGCCG	2 cut(s)	57, 704
EcoRII	CCWGG	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	5 cut(s)	66, 72, 83, 140, 566
FaqI	GGGAC	2 cut(s)	97, 622
FatI	CATG	5 cut(s)	62, 68, 79, 136, 562
FbaI	TGATCA	2 cut(s)	250, 738
Fnu4HI	GCNGC	5 cut(s)	57, 60, 428, 638, 641
FokI	GGATG	2 cut(s)	136, 417
Fsp4HI	GCNGC	5 cut(s)	57, 60, 428, 638, 641
FspBI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
GluI	GCNGC	5 cut(s)	57, 60, 428, 638, 641
HaeIII	GGCC	6 cut(s)	44, 59, 695, 706, 713, 720
HapII	CCGG	3 cut(s)	221, 650, 674
HgaI	GACGC	1 cut(s)	738
Hin1I	GRCGYC	2 cut(s)	449, 730
Hin1II	CATG	5 cut(s)	66, 72, 83, 140, 566
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	3 cut(s)	221, 650, 674
HphI	GGTGA	3 cut(s)	338, 414, 512
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	125, 447, 496
Hpy188III	TCNNGA	2 cut(s)	137, 266
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	2 cut(s)	451, 705
HpyAV	CCTTC	2 cut(s)	89, 203
HpyCH4III	ACNGT	4 cut(s)	247, 340, 384, 701
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	2 cut(s)	109, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 65
HpySE526I	ACGT	1 cut(s)	449
Hsp92I	GRCGYC	2 cut(s)	449, 730
Hsp92II	CATG	5 cut(s)	66, 72, 83, 140, 566
KpnI	GGTACC	1 cut(s)	680
Ksp22I	TGATCA	2 cut(s)	250, 738
Kzo9I	GATC	7 cut(s)	139, 250, 304, 367, 463, 614, 738
Lsp1109I	GCAGC	2 cut(s)	649, 652
LweI	GCATC	2 cut(s)	395, 407
MaeI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	4 cut(s)	102, 326, 435, 500
MalI	GATC	7 cut(s)	141, 252, 306, 369, 465, 616, 740
MboI	GATC	7 cut(s)	139, 250, 304, 367, 463, 614, 738
MboII	GAAGA	4 cut(s)	138, 458, 473, 535
MfeI	CAATTG	1 cut(s)	742
MflI	RGATCY	2 cut(s)	463, 614
MlsI	TGGCCA	2 cut(s)	695, 720
MluCI	AATT	7 cut(s)	9, 38, 113, 176, 279, 600, 742
MluNI	TGGCCA	2 cut(s)	695, 720
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	3 cut(s)	282, 343, 470
MnlI	CCTC	4 cut(s)	20, 513, 539, 702
Mox20I	TGGCCA	2 cut(s)	695, 720
MroXI	GAANNNNTTC	1 cut(s)	465
MscI	TGGCCA	2 cut(s)	695, 720
MslI	CAYNNNNRTG	3 cut(s)	67, 474, 594
Msp20I	TGGCCA	2 cut(s)	695, 720
MspI	CCGG	3 cut(s)	221, 650, 674
MspR9I	CCNGG	3 cut(s)	154, 222, 650
MunI	CAATTG	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	2 cut(s)	30, 65
NciI	CCSGG	2 cut(s)	222, 650
NdeII	GATC	7 cut(s)	139, 250, 304, 367, 463, 614, 738
NlaIII	CATG	5 cut(s)	66, 72, 83, 140, 566
NlaIV	GGNNCC	2 cut(s)	356, 678
NmeAIII	GCCGAG	2 cut(s)	50, 732
NmuCI	GTSAC	3 cut(s)	102, 326, 500
NotI	GCGGCCGC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	566
PagI	TCATGA	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	465
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	5 cut(s)	58, 61, 429, 639, 642
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	356, 678
PspPI	GGNCC	1 cut(s)	711
PstI	CTGCAG	2 cut(s)	111, 457
PsuI	RGATCY	2 cut(s)	463, 614
RsaI	GTAC	4 cut(s)	240, 386, 586, 678
RsaNI	GTAC	4 cut(s)	239, 385, 585, 677
RseI	CAYNNNNRTG	3 cut(s)	67, 474, 594
SatI	GCNGC	5 cut(s)	57, 60, 428, 638, 641
Sau3AI	GATC	7 cut(s)	139, 250, 304, 367, 463, 614, 738
Sau96I	GGNCC	1 cut(s)	711
ScaI	AGTACT	1 cut(s)	586
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	3 cut(s)	154, 222, 650
SetI	ASST	4 cut(s)	31, 158, 165, 452
SfaNI	GCATC	2 cut(s)	395, 407
SfcI	CTRYAG	2 cut(s)	107, 453
SmiMI	CAYNNNNRTG	3 cut(s)	67, 474, 594
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	7 cut(s)	9, 38, 113, 176, 279, 600, 742
SsiI	CCGC	7 cut(s)	56, 60, 298, 408, 425, 428, 576
SspMI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
StyD4I	CCNGG	3 cut(s)	152, 220, 648
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	4 cut(s)	247, 340, 384, 701
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	472
TasI	AATT	7 cut(s)	9, 38, 113, 176, 279, 600, 742
TatI	WGTACW	2 cut(s)	238, 584
TauI	GCSGC	3 cut(s)	59, 62, 430
TscAI	CASTG	3 cut(s)	111, 687, 721
TseFI	GTSAC	3 cut(s)	102, 326, 500
TseI	GCWGC	2 cut(s)	637, 640
Tsp45I	GTSAC	3 cut(s)	102, 326, 500
TspDTI	ATGAA	5 cut(s)	51, 125, 222, 291, 458
TspRI	CASTG	3 cut(s)	111, 687, 721
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 605
ZraI	GACGTC	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.