Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010011

Physical Location & Seq

Genomic Coordinates Forward (+)

12795278 .. 12795943

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGAGAAGTAGGAAGCAGAGCAGAGGTGGCGATGAATCGGCCTTGGTAAAGGCGGCCGCATGGGCATGGTATGAGCATGGGACTGGATTAGAAGGTAAGTCACTGCAGGAATTTGATATCAGAAGAACTTCTCATGATCCTAAACCATCCAGGTTCAAGCTAGAAGCTAAGAAATTAGCCGAACAAGGCAGTAGAGTTTTTGATGAAGGGTCAAGTCCGGGAACTAGTGGGAGTGTACAGACTGTTGATGATCATTCACTTCTTGATAGATATGAAATTGAGAGTATTTCTAGGCGGTTGGATCAACTTATAGAGTCTAGTGGTCACAAAGGCGCAGTTTATAATAAGGGGTTCCTAGTTGGAGATCGTCTTGCTAAACAGTACGACCACTCTAATCTTGGATGCGGTAGTAGATGCTCACCGCCGCCGAAGTTACAAGCTCCGACGTCTGCAGTAGATCTTCGTCAAAGAGGAAGTGTAGCATTATCAGATGGTGACTATACAAATCGCAGGAGGAAGAAAACGAGCAATAACTTTAGAGGGTTTTGGCAAAGGCATGTAGTGATATGCGGTTCAAGCACTCATACAGATGTAATTCTAGGGACAAGATCCTTTGTGGATAATCGGGGGCAGCAGCAGAACCCGGAAAAGCGGAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.65

Weight (kDa)

9.67

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66190 AT5G37550
fragaria_vesca	FvH4_1g30203 FvH4_1g30203
malus_domestica	MD09G1270500.v1.1
prunus_persica	Prupe.3G166400_v2.0.a1
pyrus_communis	pycom09g18160 pycom17g26720
rosa_chinensis	RchiOBHm_Chr3g0491241
rosa_laevigata	RLG00000022848
rosa_multiflora	Rmu_sc0000293.1_g000037 Rmu_sc0014162.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393000 Rroxscaffold_6G00393070
rosa_rugosa	Rorug03G0248600
rosa_samantha	Rh3AG297700 Rh3BG334000 Rh3CG330700 Rh3DG331700
rosa_wichuraiana	Rw3G026230 Rw3G026270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AatII	GACGTC	1 cut(s)	452
AciI	CCGC	8 cut(s)	56, 60, 298, 408, 425, 428, 573, 655
AclWI	GGATC	3 cut(s)	134, 312, 606
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	449
AfaI	GTAC	2 cut(s)	240, 386
AgsI	TTSAA	2 cut(s)	160, 579
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	163, 170, 443
AluI	AGCT	3 cut(s)	163, 170, 443
AlwI	GGATC	3 cut(s)	134, 312, 606
AoxI	GGCC	2 cut(s)	42, 57
ApeKI	GCWGC	2 cut(s)	634, 637
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	338
AsuC2I	CCSGG	2 cut(s)	222, 647
AsuHPI	GGTGA	2 cut(s)	414, 509
BbvI	GCAGC	2 cut(s)	646, 649
BccI	CCATC	2 cut(s)	157, 488
BciT130I	CCWGG	1 cut(s)	154
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	2 cut(s)	222, 647
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 602
BfmI	CTRYAG	2 cut(s)	107, 453
BglI	GCCNNNNNGGC	1 cut(s)	65
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	5 cut(s)	57, 60, 428, 635, 638
BlsI	GCNGC	5 cut(s)	58, 61, 429, 636, 639
Bme1390I	CCNGG	3 cut(s)	154, 222, 647
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	3 cut(s)	154, 222, 647
BmsI	GCATC	2 cut(s)	395, 407
BpuMI	CCSGG	2 cut(s)	222, 647
BsaHI	GRCGYC	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	149, 410
BseNI	ACTGG	1 cut(s)	91
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	646, 649
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	44, 59
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	221, 647
BslFI	GGGAC	2 cut(s)	97, 619
BsmFI	GGGAC	2 cut(s)	97, 619
BsnI	GGCC	2 cut(s)	44, 59
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	6 cut(s)	139, 253, 304, 367, 460, 611
BspACI	CCGC	8 cut(s)	56, 60, 298, 408, 425, 428, 573, 655
BspANI	GGCC	2 cut(s)	44, 59
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	356
BspMAI	CTGCAG	2 cut(s)	111, 457
BspPI	GGATC	3 cut(s)	134, 312, 606
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	6 cut(s)	139, 253, 304, 367, 460, 611
BssNI	GRCGYC	1 cut(s)	449
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	247, 384
BstACI	GRCGYC	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	149, 410
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	6 cut(s)	142, 256, 307, 370, 463, 614
BstMBI	GATC	6 cut(s)	139, 253, 304, 367, 460, 611
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 65, 579
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	3 cut(s)	152, 220, 645
BstSFI	CTRYAG	2 cut(s)	107, 453
BstV1I	GCAGC	2 cut(s)	646, 649
BstX2I	RGATCY	2 cut(s)	460, 611
BstYI	RGATCY	2 cut(s)	460, 611
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	44, 59
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	149, 410
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
CciI	TCATGA	1 cut(s)	136
CciNI	GCGGCCGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	239, 385
CviAII	CATG	5 cut(s)	63, 69, 80, 137, 560
CviJI	RGCY	6 cut(s)	44, 59, 163, 170, 182, 443
CviKI_1	RGCY	6 cut(s)	44, 59, 163, 170, 182, 443
CviQI	GTAC	2 cut(s)	239, 385
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	6 cut(s)	141, 255, 306, 369, 462, 613
DpnII	GATC	6 cut(s)	139, 253, 304, 367, 460, 611
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	121
Eco52I	CGGCCG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	5 cut(s)	66, 72, 83, 140, 563
FaqI	GGGAC	2 cut(s)	97, 619
FatI	CATG	5 cut(s)	62, 68, 79, 136, 559
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	5 cut(s)	57, 60, 428, 635, 638
FokI	GGATG	2 cut(s)	136, 417
Fsp4HI	GCNGC	5 cut(s)	57, 60, 428, 635, 638
FspBI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 602
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	5 cut(s)	57, 60, 428, 635, 638
HaeIII	GGCC	2 cut(s)	44, 59
HapII	CCGG	2 cut(s)	221, 647
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	5 cut(s)	66, 72, 83, 140, 563
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	2 cut(s)	38, 317
HpaII	CCGG	2 cut(s)	221, 647
HphI	GGTGA	2 cut(s)	414, 509
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	125, 447, 493
Hpy188III	TCNNGA	2 cut(s)	137, 266
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	1 cut(s)	451
HpyAV	CCTTC	2 cut(s)	89, 203
HpyCH4III	ACNGT	2 cut(s)	247, 384
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	2 cut(s)	109, 455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 65, 579
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	449
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	5 cut(s)	66, 72, 83, 140, 563
HspAI	GCGC	1 cut(s)	336
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	6 cut(s)	139, 253, 304, 367, 460, 611
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	7 cut(s)	72, 95, 139, 166, 234, 499, 660
Lsp1109I	GCAGC	2 cut(s)	646, 649
LweI	GCATC	2 cut(s)	395, 407
MaeI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 602
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	4 cut(s)	102, 326, 435, 497
MalI	GATC	6 cut(s)	141, 255, 306, 369, 462, 613
MboI	GATC	6 cut(s)	139, 253, 304, 367, 460, 611
MboII	GAAGA	3 cut(s)	138, 455, 532
MflI	RGATCY	2 cut(s)	460, 611
MluCI	AATT	4 cut(s)	113, 176, 279, 597
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	3 cut(s)	282, 343, 470
MnlI	CCTC	4 cut(s)	20, 467, 510, 536
MroXI	GAANNNNTTC	1 cut(s)	130
MslI	CAYNNNNRTG	2 cut(s)	67, 591
MspI	CCGG	2 cut(s)	221, 647
MspR9I	CCNGG	3 cut(s)	154, 222, 647
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	30, 65, 579
NciI	CCSGG	2 cut(s)	222, 647
NdeII	GATC	6 cut(s)	139, 253, 304, 367, 460, 611
NlaIII	CATG	5 cut(s)	66, 72, 83, 140, 563
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	3 cut(s)	102, 326, 497
NotI	GCGGCCGC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	563
PagI	TCATGA	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	38
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	5 cut(s)	58, 61, 429, 636, 639
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	356
PstI	CTGCAG	2 cut(s)	111, 457
PsuI	RGATCY	2 cut(s)	460, 611
RsaI	GTAC	2 cut(s)	240, 386
RsaNI	GTAC	2 cut(s)	239, 385
RseI	CAYNNNNRTG	2 cut(s)	67, 591
SatI	GCNGC	5 cut(s)	57, 60, 428, 635, 638
Sau3AI	GATC	6 cut(s)	139, 253, 304, 367, 460, 611
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	3 cut(s)	154, 222, 647
SetI	ASST	7 cut(s)	31, 100, 158, 165, 172, 445, 452
SfaNI	GCATC	2 cut(s)	395, 407
SfcI	CTRYAG	2 cut(s)	107, 453
SmiMI	CAYNNNNRTG	2 cut(s)	67, 591
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	4 cut(s)	113, 176, 279, 597
SsiI	CCGC	8 cut(s)	56, 60, 298, 408, 425, 428, 573, 655
SspMI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 602
StyD4I	CCNGG	3 cut(s)	152, 220, 645
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	247, 384
TaiI	ACGT	1 cut(s)	452
TasI	AATT	4 cut(s)	113, 176, 279, 597
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	3 cut(s)	59, 62, 430
TfiI	GAWTC	1 cut(s)	38
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	3 cut(s)	102, 326, 497
TseI	GCWGC	2 cut(s)	634, 637
Tsp45I	GTSAC	3 cut(s)	102, 326, 497
TspDTI	ATGAA	3 cut(s)	51, 222, 291
TspRI	CASTG	1 cut(s)	111
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	6 cut(s)	164, 228, 294, 321, 359, 602
ZraI	GACGTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.