AT1G66852

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015912
Physical Location & Seq
Reverse (-)
24938500 .. 24938832
333 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G66852.1

Sequence Viewer

Length: 333 bp
ATGTTTCCGCAATTGTCACTAATTTTTCTTTTCTCTCTCGTTGTAATCCACCCTTTTCATGTCTCGGCCAAGACATGGTGTGTGGCAAATACATCGGCGGCAAGTACACTACTACAAGCTAATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTGTAATGATCAATCCTGGTGGACCTTGCTTTGATCCAGATACTGTTATTAGTCATGCATCGTTTGTGATGAATGATTTCTATAGAAATCACGGGAGCACTGAAGAGTGTAATTTTAGTGGTACCGGTCAAGTCGTTACTTTTGATCCAAGTTATGGTGGTTGTGTGTATACGTAG

Protein Analysis

110

Amino Acids

11.96

Weight (kDa)

4.71

Isoelectric Point (pI)

27.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 25 - 95 6.3e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66852 AT1G66855 AT1G66870 AT1G66870 AT4G16165
fragaria_vesca FvH4_4g21350
rosa_chinensis RchiOBHm_Chr4g0427121
rosa_laevigata RLG00000007260
rosa_multiflora Rmu_co7963664.1_g000001 Rmu_sc0000953.1_g000032
rosa_roxburghii Rroxscaffold_5G00368940
rosa_rugosa Rorug04G0216200
rosa_samantha Rh4AG271900 Rh4DG275400 Rh5CG462500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AccB7I CCANNNNNTGG 2 cut(s) 75, 311
AccI GTMKAC 1 cut(s) 326
AciI CCGC 2 cut(s) 8, 98
AclWI GGATC 2 cut(s) 185, 296
AcoI YGGCCR 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 2 cut(s) 106, 280
AfiI CCNNNNNNNGG 2 cut(s) 75, 311
AgeI ACCGGT 1 cut(s) 281
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 2 cut(s) 185, 296
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 1 cut(s) 66
AsiGI ACCGGT 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 233
Asp718I GGTACC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 179
AvaII GGWCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 1 cut(s) 174
BclI TGATCA 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 67
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 311
Bse118I RCCGGY 1 cut(s) 281
BseBI CCWGG 1 cut(s) 174
BseLI CCNNNNNNNGG 2 cut(s) 75, 311
BshFI GGCC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 278
BshTI ACCGGT 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 282
BslI CCNNNNNNNGG 2 cut(s) 75, 311
BsmAI GTCTC 1 cut(s) 67
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 3 cut(s) 165, 190, 301
BspACI CCGC 2 cut(s) 8, 98
BspANI GGCC 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 280
BspPI GGATC 2 cut(s) 185, 296
BspT107I GGYRCC 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssMI GATC 3 cut(s) 165, 190, 301
BssNAI GTATAC 1 cut(s) 327
Bst1107I GTATAC 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 330
BstKTI GATC 3 cut(s) 168, 193, 304
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 3 cut(s) 165, 190, 301
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 238
BstSNI TACGTA 1 cut(s) 330
BstZ17I GTATAC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 105, 279
CspAI ACCGGT 1 cut(s) 281
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 4 cut(s) 59, 75, 135, 212
CviJI RGCY 2 cut(s) 68, 119
CviKI_1 RGCY 2 cut(s) 68, 119
CviQI GTAC 2 cut(s) 105, 279
DpnI GATC 3 cut(s) 167, 192, 303
DpnII GATC 3 cut(s) 165, 190, 301
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco105I TACGTA 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 217
FaeI CATG 4 cut(s) 62, 78, 138, 215
FaiI YATR 7 cut(s) 60, 76, 136, 213, 240, 312, 327
FatI CATG 4 cut(s) 58, 74, 134, 211
FbaI TGATCA 1 cut(s) 165
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 282
Hin1II CATG 4 cut(s) 62, 78, 138, 215
HpaII CCGG 1 cut(s) 282
Hpy166II GTNNAC 3 cut(s) 107, 179, 327
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 3 cut(s) 107, 179, 327
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 329
Hsp92II CATG 4 cut(s) 62, 78, 138, 215
KpnI GGTACC 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 3 cut(s) 165, 190, 301
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 4 cut(s) 159, 186, 207, 295
LweI GCATC 1 cut(s) 224
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 2 cut(s) 15, 292
MalI GATC 3 cut(s) 167, 192, 303
MboI GATC 3 cut(s) 165, 190, 301
MboII GAAGA 1 cut(s) 272
MfeI CAATTG 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 3 cut(s) 11, 21, 268
Mph1103I ATGCAT 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 233
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 174
NdeII GATC 3 cut(s) 165, 190, 301
NlaIII CATG 4 cut(s) 62, 78, 138, 215
NlaIV GGNNCC 1 cut(s) 280
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 233
PflMI CCANNNNNTGG 2 cut(s) 75, 311
PinAI ACCGGT 1 cut(s) 281
PkrI GCNGC 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 106, 280
RsaNI GTAC 2 cut(s) 105, 279
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 3 cut(s) 165, 190, 301
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 1 cut(s) 257
SetI ASST 3 cut(s) 121, 184, 332
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 179
SnaBI TACGTA 1 cut(s) 330
Sse9I AATT 3 cut(s) 11, 21, 268
SsiI CCGC 2 cut(s) 8, 98
SspI AATATT 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 1 cut(s) 332
TasI AATT 3 cut(s) 11, 21, 268
TatI WGTACW 1 cut(s) 104
TauI GCSGC 1 cut(s) 101
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 2 cut(s) 47, 242
TspRI CASTG 1 cut(s) 262
Van91I CCANNNNNTGG 2 cut(s) 75, 311
VpaK11BI GGWCC 1 cut(s) 179
XceI RCATGY 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.