Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015912

Physical Location & Seq

Genomic Coordinates Reverse (-)

24945484 .. 24946968

Gene Structure 1485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTTCCGCAATTGACAGTTGTATTCCTTTTCTCTCTCGTTGTAATCCACCCTCTTCATGTCTCGGCCAAAACATGGTGTGTGGCAAATGTATCGGCGGCAAGTACACAATTACAAGCTAATATTGATTGGGCATGTAGTGAAGGAAAAGTTGATTGTGCAACAATCAATCCTGGTGGATCTTGCTTTGATCCGGATACTCTTGTTAGTCATGCATCATTTGTGATGAATGATTTCTACCAGAATCACGGAAGCACTGAAGAGGCGTGTAATTTTACTGGTACTGGTCAAGTCGTTACTGCTGATCCAAGTTATGGTAGTTGTGTGTATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

111

Amino Acids

11.87

Weight (kDa)

4.49

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	25 - 96	5e-23	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66852 AT1G66855 AT1G66870 AT1G66870 AT4G16165
fragaria_vesca	FvH4_4g21350
rosa_chinensis	RchiOBHm_Chr4g0427121
rosa_laevigata	RLG00000007260
rosa_multiflora	Rmu_co7963664.1_g000001 Rmu_sc0000953.1_g000032
rosa_roxburghii	Rroxscaffold_5G00368940
rosa_rugosa	Rorug04G0216200
rosa_samantha	Rh4AG271900 Rh4DG275400 Rh5CG462500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	75, 314
AccI	GTMKAC	1 cut(s)	329
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	2 cut(s)	8, 98
AclWI	GGATC	3 cut(s)	185, 187, 299
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	2 cut(s)	106, 283
AfiI	CCNNNNNNNGG	2 cut(s)	75, 314
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	3 cut(s)	185, 187, 299
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	233
BaeI	ACNNNNGTAYC	2 cut(s)	189, 222
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 314
Bse1I	ACTGG	2 cut(s)	283, 289
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	75, 314
BseNI	ACTGG	2 cut(s)	283, 289
BshFI	GGCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	75, 314
BsmAI	GTCTC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	68
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	179, 190, 304
BspACI	CCGC	2 cut(s)	8, 98
BspANI	GGCC	1 cut(s)	68
BspEI	TCCGGA	1 cut(s)	193
BspPI	GGATC	3 cut(s)	185, 187, 299
BsrI	ACTGG	2 cut(s)	283, 289
BssMI	GATC	3 cut(s)	179, 190, 304
BssNAI	GTATAC	1 cut(s)	330
Bst1107I	GTATAC	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	2 cut(s)	60, 255
BstKTI	GATC	3 cut(s)	182, 193, 307
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	179, 190, 304
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BstZ17I	GTATAC	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	105, 282
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	4 cut(s)	59, 75, 135, 212
CviJI	RGCY	2 cut(s)	68, 119
CviKI_1	RGCY	2 cut(s)	68, 119
CviQI	GTAC	2 cut(s)	105, 282
DpnI	GATC	3 cut(s)	181, 192, 306
DpnII	GATC	3 cut(s)	179, 190, 304
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	60, 255
EarI	CTCTTC	2 cut(s)	60, 255
Eco57I	CTGAAG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	4 cut(s)	62, 78, 138, 215
FaiI	YATR	7 cut(s)	60, 76, 136, 213, 315, 330, 334
FatI	CATG	4 cut(s)	58, 74, 134, 211
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	194
Hin1II	CATG	4 cut(s)	62, 78, 138, 215
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	107, 330
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	107, 330
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	161, 215
Hsp92II	CATG	4 cut(s)	62, 78, 138, 215
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	179, 190, 304
LpnPI	CCDG	6 cut(s)	159, 186, 207, 254, 264, 270
LweI	GCATC	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	3 cut(s)	181, 192, 306
MboI	GATC	3 cut(s)	179, 190, 304
MboII	GAAGA	2 cut(s)	47, 272
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	3 cut(s)	11, 110, 271
MnlI	CCTC	2 cut(s)	63, 256
Mph1103I	ATGCAT	1 cut(s)	217
MroI	TCCGGA	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	233
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	174
NdeII	GATC	3 cut(s)	179, 190, 304
NlaIII	CATG	4 cut(s)	62, 78, 138, 215
NmeAIII	GCCGAG	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	2 cut(s)	75, 314
PkrI	GCNGC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	2 cut(s)	106, 283
RsaNI	GTAC	2 cut(s)	105, 282
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	179, 190, 304
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	224
Sse9I	AATT	3 cut(s)	11, 110, 271
SsiI	CCGC	2 cut(s)	8, 98
SspI	AATATT	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	19
TasI	AATT	3 cut(s)	11, 110, 271
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	244
TscAI	CASTG	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	47, 242
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	262
Van91I	CCANNNNNTGG	2 cut(s)	75, 314
XceI	RCATGY	1 cut(s)	138
XmiI	GTMKAC	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.