Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015912

Physical Location & Seq

Genomic Coordinates Forward (+)

15107743 .. 15108202

Gene Structure 460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTTGCTCTTTTGTTGGCAGGAGGCAAACGACAGAAAGTGGTGCATTGCTAAGCCTTCTACTCCTGATGCTCAGCTTGAAATGAATATCCAGTATGTCTGCGAAAGTCAAAGGTACGACAAGATTGACTGCTCCGCAATCCGACCGGGAGCTTCCTGTTACAACCCTTCTAACAATGTATCATCTGCATCGATGGTCATGAACCTTTATTTCCAACCAGAAGGACAGACGACCAATGCTTGCCATTTCAATGGCAGTGGAATGATTGTTTATGAAAATCCTACTGTAGGAAACTGCACCTACCCTCCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

105

Amino Acids

11.69

Weight (kDa)

4.77

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	13 - 88	3.6e-18	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66852 AT1G66855 AT1G66870 AT1G66870 AT4G16165
fragaria_vesca	FvH4_4g21350
rosa_chinensis	RchiOBHm_Chr4g0427121
rosa_laevigata	RLG00000007260
rosa_multiflora	Rmu_co7963664.1_g000001 Rmu_sc0000953.1_g000032
rosa_roxburghii	Rroxscaffold_5G00368940
rosa_rugosa	Rorug04G0216200
rosa_samantha	Rh4AG271900 Rh4DG275400 Rh5CG462500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	80, 250
AluBI	AGCT	2 cut(s)	76, 152
AluI	AGCT	2 cut(s)	76, 152
AsuC2I	CCSGG	1 cut(s)	147
BccI	CCATC	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	285
BlpI	GCTNAGC	2 cut(s)	51, 72
Bme1390I	CCNGG	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	58, 197
BpmI	CTGGAG	1 cut(s)	291
Bpu1102I	GCTNAGC	2 cut(s)	51, 72
BpuMI	CCSGG	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	191
BsaXI	ACNNNNNCTCC	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	287
Bsp1720I	GCTNAGC	2 cut(s)	51, 72
BspACI	CCGC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	85
BspDI	ATCGAT	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	51, 72
BstENI	CCTNNNNNAGG	1 cut(s)	285
BstMCI	CGRYCG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	285
BstXI	CCANNNNNNTGG	1 cut(s)	251
Bsu15I	ATCGAT	1 cut(s)	191
BsuTUI	ATCGAT	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	3 cut(s)	55, 76, 152
CviKI_1	RGCY	3 cut(s)	55, 76, 152
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	2 cut(s)	51, 72
EcoNI	CCTNNNNNAGG	1 cut(s)	285
FaeI	CATG	1 cut(s)	202
FaiI	YATR	3 cut(s)	96, 200, 273
FatI	CATG	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	291
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	1 cut(s)	202
HpaII	CCGG	1 cut(s)	146
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	3 cut(s)	65, 199, 308
HpyAV	CCTTC	3 cut(s)	66, 177, 215
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	45, 188, 297
HpyF3I	CTNAG	2 cut(s)	51, 72
Hsp92II	CATG	1 cut(s)	202
LmnI	GCTCC	2 cut(s)	137, 149
LpnPI	CCDG	6 cut(s)	5, 78, 104, 159, 169, 231
LweI	GCATC	2 cut(s)	58, 197
MaeIII	GTNAC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	166, 238
MnlI	CCTC	2 cut(s)	16, 315
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	147
NciI	CCSGG	1 cut(s)	147
NlaIII	CATG	1 cut(s)	202
PagI	TCATGA	1 cut(s)	198
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	5 cut(s)	78, 116, 154, 207, 302
SfaNI	GCATC	2 cut(s)	58, 197
SfcI	CTRYAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	249
SsiI	CCGC	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	191
TscAI	CASTG	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	98, 215, 288
TspRI	CASTG	1 cut(s)	262
XagI	CCTNNNNNAGG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.