Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0015912

Physical Location & Seq

Genomic Coordinates Reverse (-)

58782109 .. 58782817

Gene Structure 709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG271900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTGAAATTGTCATTTGTTTTCTCTGTTCTGACCATTGCTCTTTTCGTATGCTTCAATACAAGCACGGAGGCCAGGAAAGTCAAAGGTGAAAAGGAGCGGATAAATATAGAGGCAAACGACAGAAAGTGGTGCATTGCTAAGCCTTCTACTCCTGATGCTCAGCTTGAAATGAATATCCAGTATGTCTGCGAAAGTCAAAGATACCACAAGATTGACTGCTCCGCAATCCGACCGGGAGGTTCCTGTTACAACCCTTCTAACAAGGTATCATCTGCATCGATGGTCATGAACCTCTATTTCCAACCAGAAGGACAGACGACCAAATGCTTGCCATTTCAATGGCAGTGGAATGATTGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

121

Amino Acids

13.87

Weight (kDa)

8.49

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	43 - 108	1.6e-13	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66852 AT1G66855 AT1G66870 AT1G66870 AT4G16165
fragaria_vesca	FvH4_4g21350
rosa_chinensis	RchiOBHm_Chr4g0427121
rosa_laevigata	RLG00000007260
rosa_multiflora	Rmu_co7963664.1_g000001 Rmu_sc0000953.1_g000032
rosa_roxburghii	Rroxscaffold_5G00368940
rosa_rugosa	Rorug04G0216200
rosa_samantha	Rh4AG271900 Rh4DG275400 Rh5CG462500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	100
AciI	CCGC	2 cut(s)	100, 225
AgsI	TTSAA	3 cut(s)	58, 170, 341
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AoxI	GGCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	101
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	237
BlpI	GCTNAGC	2 cut(s)	141, 162
Bme1390I	CCNGG	2 cut(s)	76, 237
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	76, 237
BmsI	GCATC	2 cut(s)	148, 287
Bpu1102I	GCTNAGC	2 cut(s)	141, 162
BpuMI	CCSGG	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	2 cut(s)	36, 135
BseBI	CCWGG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	281
BseMI	GCAATG	2 cut(s)	36, 135
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	181
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	236
BsnI	GGCC	1 cut(s)	74
Bsp1720I	GCTNAGC	2 cut(s)	141, 162
BspACI	CCGC	2 cut(s)	100, 225
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	244
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	2 cut(s)	36, 135
BsrI	ACTGG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	141, 162
BstMCI	CGRYCG	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	74, 235
BstXI	CCANNNNNNTGG	1 cut(s)	342
Bsu15I	ATCGAT	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	74
BsuTUI	ATCGAT	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	332
CciI	TCATGA	1 cut(s)	288
ClaI	ATCGAT	1 cut(s)	281
CspCI	CAANNNNNGTGG	2 cut(s)	329, 364
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	3 cut(s)	74, 145, 166
CviKI_1	RGCY	3 cut(s)	74, 145, 166
DdeI	CTNAG	2 cut(s)	141, 162
EcoRII	CCWGG	1 cut(s)	74
FaeI	CATG	1 cut(s)	292
FaiI	YATR	5 cut(s)	52, 110, 186, 290, 364
FatI	CATG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	1 cut(s)	292
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	33, 233
Hpy188III	TCNNGA	2 cut(s)	155, 289
HpyAV	CCTTC	3 cut(s)	156, 267, 305
HpyCH4V	TGCA	2 cut(s)	135, 278
HpyF3I	CTNAG	2 cut(s)	141, 162
Hsp92II	CATG	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	97, 227
LpnPI	CCDG	7 cut(s)	61, 88, 168, 194, 249, 259, 321
LweI	GCATC	2 cut(s)	148, 287
MaeIII	GTNAC	1 cut(s)	248
MbiI	CCGCTC	1 cut(s)	100
MluCI	AATT	1 cut(s)	8
MmeI	TCCRAC	2 cut(s)	256, 328
MnlI	CCTC	4 cut(s)	64, 106, 233, 305
MslI	CAYNNNNRTG	1 cut(s)	340
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	76, 237
MvaI	CCWGG	1 cut(s)	76
NciI	CCSGG	1 cut(s)	237
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	244
PagI	TCATGA	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	340
ScrFI	CCNGG	2 cut(s)	76, 237
SetI	ASST	5 cut(s)	91, 168, 244, 270, 297
SfaNI	GCATC	2 cut(s)	148, 287
SmiMI	CAYNNNNRTG	1 cut(s)	340
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	2 cut(s)	100, 225
StyD4I	CCNGG	2 cut(s)	74, 235
TaqI	TCGA	1 cut(s)	281
TasI	AATT	1 cut(s)	8
TscAI	CASTG	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	188, 305
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.