Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000953.1

Orthogroup ID

OG0015912

Physical Location & Seq

Genomic Coordinates Reverse (-)

159335 .. 160990

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000953.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgatcaatgttgctcgatctttttgttggcaggaggcaaacgacagaaagtggtgcattgctaagccttctactcctgatgctcagcttgaaatgaatatccagtatgtctgcgaaagtcaaaggtaccacaagattgactgctccgcaatccgacggggaggctcctgttacaacccttctaacaagacgctactagaggctatgaagcatggatacttcaaaaatctgactatgctgtatcgtatccgtatcggatacggatacggatatcagtccggcggagtcctttctgactttccgagttcgcagtcgcatcagatatctcttcgtttcttcgtttcttcgcatcagatatcagttcggcggcgttctcatcagatatcagttcccgagttcgccgtcggcttcgttctcactcggtttcttcctgagttcgcagtgggcttcttcccgagttcgcactcggcttcttcccgatttcacacttcgcagctagtgggtatgttcagcagttcagatcgaaagcttgaagctagtgggaagatgagcgatgcaaatgcaacagggtcagcaacagcaacagattcatctactaatgagggtgaacccagtggaagtgtgggagataataataagggttctcctttgtggaaatttgttacggtccttgttcaagttgattgtaagggtgtaatctttgatgatgaggatggagttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

241

Amino Acids

26.72

Weight (kDa)

8.19

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66852 AT1G66855 AT1G66870 AT1G66870 AT4G16165
fragaria_vesca	FvH4_4g21350
rosa_chinensis	RchiOBHm_Chr4g0427121
rosa_laevigata	RLG00000007260
rosa_multiflora	Rmu_co7963664.1_g000001 Rmu_sc0000953.1_g000032
rosa_roxburghii	Rroxscaffold_5G00368940
rosa_rugosa	Rorug04G0216200
rosa_samantha	Rh4AG271900 Rh4DG275400 Rh5CG462500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	3 cut(s)	147, 282, 367
AcsI	RAATTY	1 cut(s)	656
AfaI	GTAC	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	92, 223, 533, 677
AluBI	AGCT	4 cut(s)	88, 496, 529, 536
AluI	AGCT	4 cut(s)	88, 496, 529, 536
Ama87I	CYCGRG	2 cut(s)	392, 454
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	1 cut(s)	656
Asp718I	GGTACC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	667
AsuHPI	GGTGA	1 cut(s)	617
AvaI	CYCGRG	2 cut(s)	392, 454
AvaII	GGWCC	1 cut(s)	667
BanI	GGYRCC	1 cut(s)	126
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	1 cut(s)	707
BceAI	ACGGC	1 cut(s)	386
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BciVI	GTATCC	4 cut(s)	209, 251, 257, 257
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	3 cut(s)	197, 497, 537
BfuI	GTATCC	4 cut(s)	209, 251, 257, 257
BisI	GCNGC	2 cut(s)	368, 494
BlpI	GCTNAGC	2 cut(s)	63, 84
BlsI	GCNGC	2 cut(s)	369, 495
Bme18I	GGWCC	1 cut(s)	667
BmeT110I	CYCGRG	2 cut(s)	392, 454
BmgT120I	GGNCC	1 cut(s)	667
BmiI	GGNNCC	2 cut(s)	128, 166
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	4 cut(s)	70, 325, 358, 544
BmuI	ACTGGG	1 cut(s)	606
Bpu1102I	GCTNAGC	2 cut(s)	63, 84
Bse1I	ACTGG	2 cut(s)	103, 612
Bse3DI	GCAATG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	718
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	98, 423
BseNI	ACTGG	2 cut(s)	103, 612
BseXI	GCAGC	1 cut(s)	505
BshNI	GGYRCC	1 cut(s)	126
BsiHKCI	CYCGRG	2 cut(s)	392, 454
BsiSI	CCGG	1 cut(s)	279
BsoBI	CYCGRG	2 cut(s)	392, 454
Bsp143I	GATC	3 cut(s)	3, 17, 520
Bsp1720I	GCTNAGC	2 cut(s)	63, 84
BspACI	CCGC	3 cut(s)	147, 282, 367
BspCNI	CTCAG	2 cut(s)	97, 424
BspLI	GGNNCC	2 cut(s)	128, 166
BspT107I	GGYRCC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	103, 612
BssMI	GATC	3 cut(s)	3, 17, 520
Bst4CI	ACNGT	1 cut(s)	667
Bst6I	CTCTTC	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	63, 84, 432
BstF5I	GGATG	1 cut(s)	718
BstKTI	GATC	3 cut(s)	6, 20, 523
BstMBI	GATC	3 cut(s)	3, 17, 520
BstV1I	GCAGC	1 cut(s)	505
BsuI	GTATCC	4 cut(s)	209, 251, 257, 257
BtgZI	GCGATG	1 cut(s)	567
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	447, 619
Cfr13I	GGNCC	1 cut(s)	667
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	1 cut(s)	212
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	3 cut(s)	63, 84, 432
DpnI	GATC	3 cut(s)	5, 19, 522
DpnII	GATC	3 cut(s)	3, 17, 520
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	297
Eco32I	GATATC	4 cut(s)	272, 324, 357, 384
Eco47I	GGWCC	1 cut(s)	667
Eco88I	CYCGRG	2 cut(s)	392, 454
EcoRV	GATATC	4 cut(s)	272, 324, 357, 384
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	108, 206, 213, 236, 506
FatI	CATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	368, 494
Fsp4HI	GCNGC	2 cut(s)	368, 494
FspBI	CTAG	3 cut(s)	197, 497, 537
GluI	GCNGC	2 cut(s)	368, 494
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	2 cut(s)	285, 587
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	1 cut(s)	608
Hpy188I	TCNGA	9 cut(s)	155, 231, 257, 295, 303, 321, 354, 381, 520
Hpy188III	TCNNGA	5 cut(s)	77, 392, 431, 454, 477
Hpy8I	GTNNAC	1 cut(s)	608
Hpy99I	CGWCG	2 cut(s)	159, 407
HpyAV	CCTTC	2 cut(s)	78, 189
HpyCH4III	ACNGT	1 cut(s)	667
HpyCH4V	TGCA	3 cut(s)	57, 557, 563
HpyF3I	CTNAG	3 cut(s)	63, 84, 432
Hsp92II	CATG	1 cut(s)	215
KpnI	GGTACC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 17, 520
LmnI	GCTCC	2 cut(s)	149, 170
LpnPI	CCDG	8 cut(s)	17, 90, 116, 181, 292, 444, 552, 625
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	4 cut(s)	70, 325, 358, 544
MaeI	CTAG	3 cut(s)	197, 497, 537
MaeIII	GTNAC	2 cut(s)	170, 661
MalI	GATC	3 cut(s)	5, 19, 522
MboI	GATC	3 cut(s)	3, 17, 520
MboII	GAAGA	7 cut(s)	320, 328, 336, 419, 442, 465, 556
MluCI	AATT	1 cut(s)	656
MlyI	GAGTC	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	28, 155, 193, 595, 703
MspI	CCGG	1 cut(s)	279
NdeII	GATC	3 cut(s)	3, 17, 520
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	128, 166
NmeAIII	GCCGAG	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	587
PkrI	GCNGC	2 cut(s)	369, 495
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	128, 166
PspPI	GGNCC	1 cut(s)	667
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SatI	GCNGC	2 cut(s)	368, 494
Sau3AI	GATC	3 cut(s)	3, 17, 520
Sau96I	GGNCC	1 cut(s)	667
SchI	GAGTC	1 cut(s)	294
SetI	ASST	5 cut(s)	90, 128, 498, 531, 538
SfaNI	GCATC	4 cut(s)	70, 325, 358, 544
SinI	GGWCC	1 cut(s)	667
Sse9I	AATT	1 cut(s)	656
SsiI	CCGC	3 cut(s)	147, 282, 367
SspMI	CTAG	3 cut(s)	197, 497, 537
TaaI	ACNGT	1 cut(s)	667
TaqI	TCGA	2 cut(s)	16, 523
TasI	AATT	1 cut(s)	656
TauI	GCSGC	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	587
TscAI	CASTG	2 cut(s)	447, 619
TseI	GCWGC	1 cut(s)	493
TspDTI	ATGAA	3 cut(s)	110, 221, 579
TspGWI	ACGGA	3 cut(s)	239, 276, 282
TspRI	CASTG	2 cut(s)	447, 619
VpaK11BI	GGWCC	1 cut(s)	667
XapI	RAATTY	1 cut(s)	656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XspI	CTAG	3 cut(s)	197, 497, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.