AT4G16165

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015912
Physical Location & Seq
Forward (+)
9164080 .. 9164633
554 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16165.1

Sequence Viewer

Length: 336 bp
ATGTTTCCGCAATTGACACTAATTTTCCTTCTCTCTCTCACTGTAATCTACCCCTTTCATGTCTCGGCCAAGACATGGTGTGTAGCAAACCCATCAGCCGCAAGTACACAATTACAAGCTAATATTGATTGGCTATGTAGTCAAGGAAATCCTGGTTGTGTATTAATCGGTCCTGGTGGATCTTGCTTTGAACCAAATAATGTTATTAACCATGCATCATTTGTGATGAATGATTACTACCAGTTGCAGGGAAGCACTGAAGAGGCGTGTAATTTTAGTGGTTCTGGTCGAATCATTGATACTAATCCAAGTTATGCTCGTTGTGTGTATTCGTAG

Protein Analysis

111

Amino Acids

12.07

Weight (kDa)

4.92

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 25 - 96 6.9e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66852 AT1G66855 AT1G66870 AT1G66870 AT4G16165
fragaria_vesca FvH4_4g21350
rosa_chinensis RchiOBHm_Chr4g0427121
rosa_laevigata RLG00000007260
rosa_multiflora Rmu_co7963664.1_g000001 Rmu_sc0000953.1_g000032
rosa_roxburghii Rroxscaffold_5G00368940
rosa_rugosa Rorug04G0216200
rosa_samantha Rh4AG271900 Rh4DG275400 Rh5CG462500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 75
AciI CCGC 2 cut(s) 8, 99
AclWI GGATC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 75, 247
AgsI TTSAA 1 cut(s) 191
AjnI CCWGG 2 cut(s) 151, 172
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 1 cut(s) 187
AoxI GGCC 1 cut(s) 66
AseI ATTAAT 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 170
AvaII GGWCC 1 cut(s) 170
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 2 cut(s) 153, 174
BcoDI GTCTC 1 cut(s) 67
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 153, 174
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmrFI CCNGG 2 cut(s) 153, 174
BmsI GCATC 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 303
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 247
Bse1I ACTGG 1 cut(s) 241
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 2 cut(s) 153, 174
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 75, 247
BseNI ACTGG 1 cut(s) 241
BshFI GGCC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 75, 247
BsmAI GTCTC 1 cut(s) 67
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 179
BspACI CCGC 2 cut(s) 8, 99
BspANI GGCC 1 cut(s) 68
BspPI GGATC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 241
BssMI GATC 1 cut(s) 179
Bst2UI CCWGG 2 cut(s) 153, 174
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 255
BstKTI GATC 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 1 cut(s) 179
BstNI CCWGG 2 cut(s) 153, 174
BstSCI CCNGG 2 cut(s) 151, 172
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 1 cut(s) 68
BtsIMutI CAGTG 2 cut(s) 39, 255
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 105
CviAII CATG 3 cut(s) 59, 75, 212
CviJI RGCY 4 cut(s) 68, 98, 119, 133
CviKI_1 RGCY 4 cut(s) 68, 98, 119, 133
CviQI GTAC 1 cut(s) 105
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 151, 172
EcoT22I ATGCAT 1 cut(s) 217
FaeI CATG 3 cut(s) 62, 78, 215
FaiI YATR 5 cut(s) 60, 76, 136, 213, 315
FatI CATG 3 cut(s) 58, 74, 211
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 3 cut(s) 62, 78, 215
HinfI GANTC 1 cut(s) 291
Hpy166II GTNNAC 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 215, 247
Hsp92II CATG 3 cut(s) 62, 78, 215
Kzo9I GATC 1 cut(s) 179
LpnPI CCDG 7 cut(s) 138, 159, 165, 186, 233, 254, 270
LweI GCATC 1 cut(s) 224
MalI GATC 1 cut(s) 181
MboI GATC 1 cut(s) 179
MboII GAAGA 1 cut(s) 272
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 1 cut(s) 179
MluCI AATT 4 cut(s) 11, 21, 110, 271
MnlI CCTC 1 cut(s) 256
Mph1103I ATGCAT 1 cut(s) 217
MseI TTAA 2 cut(s) 164, 207
MspR9I CCNGG 2 cut(s) 153, 174
MunI CAATTG 1 cut(s) 11
MvaI CCWGG 2 cut(s) 153, 174
NdeII GATC 1 cut(s) 179
NlaIII CATG 3 cut(s) 62, 78, 215
NmeAIII GCCGAG 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 217
PfeI GAWTC 1 cut(s) 291
PflMI CCANNNNNTGG 1 cut(s) 75
PkrI GCNGC 1 cut(s) 100
PshBI ATTAAT 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 151, 172
PspGI CCWGG 2 cut(s) 151, 172
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 164, 207
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 179
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 153, 174
SetI ASST 1 cut(s) 121
SfaNI GCATC 1 cut(s) 224
SinI GGWCC 1 cut(s) 170
Sse9I AATT 4 cut(s) 11, 21, 110, 271
SsiI CCGC 2 cut(s) 8, 99
SspI AATATT 1 cut(s) 124
StyD4I CCNGG 2 cut(s) 151, 172
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 289
TaqII GACCGA 1 cut(s) 158
TasI AATT 4 cut(s) 11, 21, 110, 271
TatI WGTACW 1 cut(s) 104
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 2 cut(s) 164, 207
Tru9I TTAA 2 cut(s) 164, 207
TscAI CASTG 2 cut(s) 46, 262
TspDTI ATGAA 2 cut(s) 47, 242
TspRI CASTG 2 cut(s) 46, 262
Van91I CCANNNNNTGG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 170
VspI ATTAAT 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.