Rh4DG275400

Major pollen allergen Ole e 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015912
Physical Location & Seq
Reverse (-)
49449049 .. 49449920
872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG275400.1

Sequence Viewer

Length: 414 bp
ATGTCTGCGATGCTGAAATTGTCATTTGTGTTCTCTGTTCTAACTATTGCTCTTTTCTTATGTTTCAATACAAGCACTGAGGCCAGGGAAGTCAAAAGTGAAAAGGAGCGGATGAATATAGAGGCAAACGACAGAAAGTGGTGCATTGCTAAGCCTTCTACTCCTGATGCTCAGCTTGTAATGAATATCCAGTATGTCTGCGAAAGTCAAAGGTACCACAAGATTGACTGCTCCGCAATCCGACCGGGAGGTTCCTGTTACAACCCTTCTAACAAGGTATCATCTGCATCGATGGTCATCAACCTCTATTTCCAACCAGAAGGACAGACGACCAATGCTTGCCATTTCAATGGCAGTGGAATGATTGTTTATGAAAATCCTACTGTAAGAAACTGCACCTACCCTCCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

137

Amino Acids

15.41

Weight (kDa)

7.55

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 46 - 121 2.6e-17 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66852 AT1G66855 AT1G66870 AT1G66870 AT4G16165
fragaria_vesca FvH4_4g21350
rosa_chinensis RchiOBHm_Chr4g0427121
rosa_laevigata RLG00000007260
rosa_multiflora Rmu_co7963664.1_g000001 Rmu_sc0000953.1_g000032
rosa_roxburghii Rroxscaffold_5G00368940
rosa_rugosa Rorug04G0216200
rosa_samantha Rh4AG271900 Rh4DG275400 Rh5CG462500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 109
AciI CCGC 2 cut(s) 109, 234
AfaI GTAC 1 cut(s) 215
AgsI TTSAA 2 cut(s) 67, 349
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
AoxI GGCC 1 cut(s) 81
Asp718I GGTACC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 246
BanI GGYRCC 1 cut(s) 213
BccI CCATC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 85
BcnI CCSGG 1 cut(s) 246
BlpI GCTNAGC 2 cut(s) 150, 171
Bme1390I CCNGG 2 cut(s) 85, 246
BmiI GGNNCC 2 cut(s) 215, 253
BmrFI CCNGG 2 cut(s) 85, 246
BmsI GCATC 2 cut(s) 157, 296
BpmI CTGGAG 1 cut(s) 390
Bpu1102I GCTNAGC 2 cut(s) 150, 171
BpuMI CCSGG 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 290
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 84
BsaXI ACNNNNNCTCC 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 190
Bse3DI GCAATG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 1 cut(s) 85
BseCI ATCGAT 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 1 cut(s) 296
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 69, 185
BseNI ACTGG 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 379
Bsh1285I CGRYCG 1 cut(s) 245
BshFI GGCC 1 cut(s) 83
BshNI GGYRCC 1 cut(s) 213
BshVI ATCGAT 1 cut(s) 290
BsiEI CGRYCG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 245
BsnI GGCC 1 cut(s) 83
Bsp1720I GCTNAGC 2 cut(s) 150, 171
BspACI CCGC 2 cut(s) 109, 234
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 2 cut(s) 70, 184
BspDI ATCGAT 1 cut(s) 290
BspLI GGNNCC 2 cut(s) 215, 253
BspT107I GGYRCC 1 cut(s) 213
BsrBI CCGCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 3 cut(s) 78, 150, 171
BstF5I GGATG 1 cut(s) 117
BstMCI CGRYCG 1 cut(s) 245
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 83, 244
BstXI CCANNNNNNTGG 1 cut(s) 350
Bsu15I ATCGAT 1 cut(s) 290
BsuRI GGCC 1 cut(s) 83
BsuTUI ATCGAT 1 cut(s) 290
BtgZI GCGATG 1 cut(s) 23
BtsCI GGATG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 75, 361
Cac8I GCNNGC 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 290
Csp6I GTAC 1 cut(s) 214
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviJI RGCY 3 cut(s) 83, 154, 175
CviKI_1 RGCY 3 cut(s) 83, 154, 175
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 78, 150, 171
EcoRII CCWGG 1 cut(s) 83
FaiI YATR 4 cut(s) 61, 119, 195, 372
FokI GGATG 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 245
HpaII CCGG 1 cut(s) 245
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 2 cut(s) 164, 407
HpyAV CCTTC 3 cut(s) 165, 276, 314
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4V TGCA 3 cut(s) 144, 287, 396
HpyF3I CTNAG 3 cut(s) 78, 150, 171
KpnI GGTACC 1 cut(s) 217
LmnI GCTCC 2 cut(s) 106, 236
LpnPI CCDG 7 cut(s) 70, 97, 177, 203, 258, 268, 330
LweI GCATC 2 cut(s) 157, 296
MaeIII GTNAC 1 cut(s) 257
MbiI CCGCTC 1 cut(s) 109
MluCI AATT 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 265, 337
MnlI CCTC 5 cut(s) 73, 115, 242, 314, 414
MslI CAYNNNNRTG 1 cut(s) 348
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 85, 246
MvaI CCWGG 1 cut(s) 85
NciI CCSGG 1 cut(s) 246
NlaIV GGNNCC 2 cut(s) 215, 253
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 215, 253
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 85, 246
SetI ASST 6 cut(s) 177, 215, 253, 279, 306, 401
SfaNI GCATC 2 cut(s) 157, 296
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 1 cut(s) 17
SsiI CCGC 2 cut(s) 109, 234
StyD4I CCNGG 2 cut(s) 83, 244
TaaI ACNGT 1 cut(s) 385
TaqI TCGA 1 cut(s) 290
TasI AATT 1 cut(s) 17
TscAI CASTG 2 cut(s) 82, 361
TspDTI ATGAA 3 cut(s) 128, 197, 387
TspRI CASTG 2 cut(s) 82, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.