Rroxscaffold_5G00368940

Major pollen allergen Ole e 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015912
Physical Location & Seq
Reverse (-)
50653638 .. 50654718
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368940.1

Sequence Viewer

Length: 351 bp
ATGTCTGCAATGCTGAAATTGTCATTTGTTTTCTCTGTTCTAACCATTGCTCTTCTCGAGGCAAACGACAGAAAGTGGTGCATTGCTAAGCCTTCTACTCCTGATGCTCAGCTTGAAATGAATATCCAGTATGTCTGCGAAAGTCAAAGGTACCACAAGATTGACTGCTCCGCAATCCGACCGGGAGGTTCCTGTTACAACCCTTCTAACAAGGTATCATCTGCATCGATGGTCATGAACCTCTATTTCCAACCAGAAGGACAGACGACCAATGCTTGCCATTTCAATGGCAGTGGAATGATTGTTTATGAAAATCCTACTGTAGGAAACTGCACCTACCCTCCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

116

Amino Acids

12.85

Weight (kDa)

6.07

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 25 - 100 1.5e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66852 AT1G66855 AT1G66870 AT1G66870 AT4G16165
fragaria_vesca FvH4_4g21350
rosa_chinensis RchiOBHm_Chr4g0427121
rosa_laevigata RLG00000007260
rosa_multiflora Rmu_co7963664.1_g000001 Rmu_sc0000953.1_g000032
rosa_roxburghii Rroxscaffold_5G00368940
rosa_rugosa Rorug04G0216200
rosa_samantha Rh4AG271900 Rh4DG275400 Rh5CG462500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 150
AciI CCGC 1 cut(s) 171
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 2 cut(s) 116, 286
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 183
AvaI CYCGRG 1 cut(s) 56
BanI GGYRCC 1 cut(s) 150
BccI CCATC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 321
BlpI GCTNAGC 2 cut(s) 87, 108
Bme1390I CCNGG 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 152, 190
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 2 cut(s) 94, 233
BpmI CTGGAG 1 cut(s) 327
Bpu1102I GCTNAGC 2 cut(s) 87, 108
BpuMI CCSGG 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 227
BsaXI ACNNNNNCTCC 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 127
Bse3DI GCAATG 3 cut(s) 15, 45, 81
BseCI ATCGAT 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMI GCAATG 3 cut(s) 15, 45, 81
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 316
Bsh1285I CGRYCG 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 150
BshVI ATCGAT 1 cut(s) 227
BsiEI CGRYCG 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 56
Bsp1720I GCTNAGC 2 cut(s) 87, 108
BspACI CCGC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 121
BspDI ATCGAT 1 cut(s) 227
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 152, 190
BspQI GCTCTTC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 150
BsrDI GCAATG 3 cut(s) 15, 45, 81
BsrI ACTGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 2 cut(s) 87, 108
BstENI CCTNNNNNAGG 1 cut(s) 321
BstMCI CGRYCG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 321
BstXI CCANNNNNNTGG 1 cut(s) 287
Bsu15I ATCGAT 1 cut(s) 227
BsuTUI ATCGAT 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 277
CciI TCATGA 1 cut(s) 234
ClaI ATCGAT 1 cut(s) 227
Csp6I GTAC 1 cut(s) 151
CspCI CAANNNNNGTGG 2 cut(s) 274, 309
CviAII CATG 1 cut(s) 235
CviJI RGCY 2 cut(s) 91, 112
CviKI_1 RGCY 2 cut(s) 91, 112
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 87, 108
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 321
FaeI CATG 1 cut(s) 238
FaiI YATR 3 cut(s) 132, 236, 309
FatI CATG 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 327
HapII CCGG 1 cut(s) 182
Hin1II CATG 1 cut(s) 238
HpaII CCGG 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 4 cut(s) 56, 101, 235, 344
HpyAV CCTTC 3 cut(s) 102, 213, 251
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 4 cut(s) 8, 81, 224, 333
HpyF3I CTNAG 2 cut(s) 87, 108
Hsp92II CATG 1 cut(s) 238
KpnI GGTACC 1 cut(s) 154
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 5 cut(s) 114, 140, 195, 205, 267
LweI GCATC 2 cut(s) 94, 233
MaeIII GTNAC 1 cut(s) 194
MboII GAAGA 1 cut(s) 44
MluCI AATT 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 202, 274
MnlI CCTC 4 cut(s) 52, 179, 251, 351
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 183
NciI CCSGG 1 cut(s) 183
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 2 cut(s) 152, 190
PaeR7I CTCGAG 1 cut(s) 56
PagI TCATGA 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 152, 190
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 183
SetI ASST 6 cut(s) 114, 152, 190, 216, 243, 338
SfaNI GCATC 2 cut(s) 94, 233
SfcI CTRYAG 1 cut(s) 321
Sfr274I CTCGAG 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 17
SsiI CCGC 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 57, 227
TasI AATT 1 cut(s) 17
TscAI CASTG 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 134, 251, 324
TspRI CASTG 1 cut(s) 298
XagI CCTNNNNNAGG 1 cut(s) 321
XhoI CTCGAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.