Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7963664.1

Orthogroup ID

OG0015912

Physical Location & Seq

Genomic Coordinates Reverse (-)

91 .. 369

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7963664.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgatcaatgttgctcgatctttttgttggcaggaggcaaacgacagaaagtggtgcattgctaagccttctactcctgatgctcagcttgaaatgaatatccagtatgtctgcgaaagtcaaaggtaccacaagattgactgctccgcaatccgacggggaggctcctgttacaacccttctaacaaggtatcatctgcatcgatggtcatgaacctctatttccaaccagaaggacagacgaccaatgcttgccatttcacctaccctccagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

92

Amino Acids

10.55

Weight (kDa)

7.59

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66852 AT1G66855 AT1G66870 AT1G66870 AT4G16165
fragaria_vesca	FvH4_4g21350
rosa_chinensis	RchiOBHm_Chr4g0427121
rosa_laevigata	RLG00000007260
rosa_multiflora	Rmu_co7963664.1_g000001 Rmu_sc0000953.1_g000032
rosa_roxburghii	Rroxscaffold_5G00368940
rosa_rugosa	Rorug04G0216200
rosa_samantha	Rh4AG271900 Rh4DG275400 Rh5CG462500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	92
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Asp718I	GGTACC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	126
BccI	CCATC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	3
BlpI	GCTNAGC	2 cut(s)	63, 84
BmiI	GGNNCC	2 cut(s)	128, 166
BmsI	GCATC	2 cut(s)	70, 209
BpmI	CTGGAG	1 cut(s)	255
Bpu1102I	GCTNAGC	2 cut(s)	63, 84
Bsa29I	ATCGAT	1 cut(s)	203
BsaXI	ACNNNNNCTCC	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	57
BseCI	ATCGAT	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	126
BshVI	ATCGAT	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	3, 17
Bsp1720I	GCTNAGC	2 cut(s)	63, 84
BspACI	CCGC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	97
BspDI	ATCGAT	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	128, 166
BspT107I	GGYRCC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	3, 17
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	63, 84
BstKTI	GATC	2 cut(s)	6, 20
BstMBI	GATC	2 cut(s)	3, 17
Bsu15I	ATCGAT	1 cut(s)	203
BsuTUI	ATCGAT	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	210
ClaI	ATCGAT	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	3 cut(s)	67, 88, 165
CviKI_1	RGCY	3 cut(s)	67, 88, 165
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	63, 84
DpnI	GATC	2 cut(s)	5, 19
DpnII	GATC	2 cut(s)	3, 17
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	108, 212
FatI	CATG	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	3
GsuI	CTGGAG	1 cut(s)	255
Hin1II	CATG	1 cut(s)	214
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	155
Hpy188III	TCNNGA	3 cut(s)	77, 211, 272
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	3 cut(s)	78, 189, 227
HpyCH4V	TGCA	2 cut(s)	57, 200
HpyF3I	CTNAG	2 cut(s)	63, 84
Hsp92II	CATG	1 cut(s)	214
KpnI	GGTACC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 17
LmnI	GCTCC	2 cut(s)	149, 170
LpnPI	CCDG	5 cut(s)	17, 90, 116, 181, 243
LweI	GCATC	2 cut(s)	70, 209
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	5, 19
MboI	GATC	2 cut(s)	3, 17
MmeI	TCCRAC	2 cut(s)	178, 250
MnlI	CCTC	4 cut(s)	28, 155, 227, 279
NdeII	GATC	2 cut(s)	3, 17
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	2 cut(s)	128, 166
PagI	TCATGA	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	128, 166
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	3, 17
SetI	ASST	5 cut(s)	90, 128, 192, 219, 266
SfaNI	GCATC	2 cut(s)	70, 209
SsiI	CCGC	1 cut(s)	147
TaqI	TCGA	2 cut(s)	16, 203
TspDTI	ATGAA	2 cut(s)	110, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.