Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015912

Physical Location & Seq

Genomic Coordinates Reverse (-)

52374293 .. 52375015

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTCTGCGATGCTGAAATTGTCATTTGTGTTCTCTGAGGCAAACGACAGAAAGTGGTGCATTGCTAAGCCTTCTACTCCTGATGCTCAGCTTGAAATGAATATCCAGTATGTCTGCGAAAGTCAAAGGTACCACAAGATTGACTGCTCCGCAATCCGACCGGGAGGTTCCTGTTACAACCCTTCTAACAAGGTATCATCTGCATCGATGGTCATCGACCTCTATTTCCAACCAGAAGGACAGACGACCAATGCTTGCCATTTCAATGGCAGTGGAATGATTGTTTATGAAAATCCTAGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

101

Amino Acids

11.27

Weight (kDa)

5.6

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	18 - 93	1.6e-17	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66852 AT1G66855 AT1G66870 AT1G66870 AT4G16165
fragaria_vesca	FvH4_4g21350
rosa_chinensis	RchiOBHm_Chr4g0427121
rosa_laevigata	RLG00000007260
rosa_multiflora	Rmu_co7963664.1_g000001 Rmu_sc0000953.1_g000032
rosa_roxburghii	Rroxscaffold_5G00368940
rosa_rugosa	Rorug04G0216200
rosa_samantha	Rh4AG271900 Rh4DG275400 Rh5CG462500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	129
AciI	CCGC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	95, 265
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Asp718I	GGTACC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	129
BccI	CCATC	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	162
BfaI	CTAG	1 cut(s)	297
BlpI	GCTNAGC	2 cut(s)	66, 87
Bme1390I	CCNGG	1 cut(s)	162
BmiI	GGNNCC	2 cut(s)	131, 169
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	73, 212
Bpu1102I	GCTNAGC	2 cut(s)	66, 87
BpuMI	CCSGG	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	212
BseCI	ATCGAT	1 cut(s)	206
BseJI	GATNNNNATC	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	27, 101
BseNI	ACTGG	1 cut(s)	106
Bsh1285I	CGRYCG	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	161
Bsp1720I	GCTNAGC	2 cut(s)	66, 87
BspACI	CCGC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	28, 100
BspDI	ATCGAT	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	131, 169
BspT107I	GGYRCC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	3 cut(s)	36, 66, 87
BstMCI	CGRYCG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	160
BstXI	CCANNNNNNTGG	1 cut(s)	266
Bsu15I	ATCGAT	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	23
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	256
ClaI	ATCGAT	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	130
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviJI	RGCY	2 cut(s)	70, 91
CviKI_1	RGCY	2 cut(s)	70, 91
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	3 cut(s)	36, 66, 87
FaiI	YATR	2 cut(s)	111, 288
FspBI	CTAG	1 cut(s)	297
HapII	CCGG	1 cut(s)	161
HpaII	CCGG	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	37, 158
Hpy188III	TCNNGA	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	81, 192, 230
HpyCH4V	TGCA	2 cut(s)	60, 203
HpyF3I	CTNAG	3 cut(s)	36, 66, 87
KpnI	GGTACC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	5 cut(s)	93, 119, 174, 184, 246
LweI	GCATC	2 cut(s)	73, 212
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	173
MluCI	AATT	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	181, 253
MnlI	CCTC	3 cut(s)	31, 158, 230
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	162
NciI	CCSGG	1 cut(s)	162
NlaIV	GGNNCC	2 cut(s)	131, 169
PspN4I	GGNNCC	2 cut(s)	131, 169
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	5 cut(s)	93, 131, 169, 195, 222
SfaNI	GCATC	2 cut(s)	73, 212
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	160
TaqI	TCGA	2 cut(s)	206, 216
TasI	AATT	1 cut(s)	17
TscAI	CASTG	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	113, 303
TspRI	CASTG	1 cut(s)	277
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.