AT1G67325

ranBP2-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004516
Physical Location & Seq
Reverse (-)
25209394 .. 25213253
3860 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67325.1

Sequence Viewer

Length: 864 bp
ATGTCACAGGTAGACAACAGAAATTCATCAGCAGCCAAGCGTGCTAGAACTGACGGGGGGCGTAGAGAAGATGATTGGATCTGCCCAAGTTGTGGCAATGTCAACTTTTCATTCAGGACAACTTGCAATATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAAAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGGGCATACTTAGGATCTGGGGGTCCCCCTCCAGTATATATGGGCGGGTCACCATATGGATCTCCTCTCTTTAATGGATCGTCTATGCCTCCTTATGACGTCCCATTTTCTGGGGGTTCGCCTTACCATTTTAACTATAATAGCCGAATGCCTGCCGGAGCTCATTACAGACCATTACATATGTCTGGACCACCACCATACCATGGCGGATCTATGATGGGAAGTGGTGGTATGTATGGAATGCCTCCACCAATAGACAGGTATGGCCTTGGTATGGCAATGGGTCCTGGTTCTGCCGCTGCCATGATGCCAAGACCAAGGTTTTACCCAGATGAAAAATCACAAAAGAGAGATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGGGTGGAAGCTCAGATAAAATATCCAAACAAAATGCACCGGAAGGGAGCTGGAAGTGTGATAACTGTGGAAATATAAACTACCCATTCAGGAGCAAATGCAACAGGCAAAACTGTGGAGCTGATAAGCCTGGGGATCGGTCGAATGGATCTCCGTCCCGTGCACCAGAAGAGAACGATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

287

Amino Acids

31.11

Weight (kDa)

9.23

Isoelectric Point (pI)

64.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 22 - 44 8.9e-06 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 240 - 271 1e-05 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 163
AccB7I CCANNNNNTGG 4 cut(s) 92, 329, 422, 671
AccI GTMKAC 1 cut(s) 12
AccII CGCG 1 cut(s) 582
AciI CCGC 3 cut(s) 264, 426, 516
AclWI GGATC 7 cut(s) 86, 241, 286, 304, 436, 822, 835
AcsI RAATTY 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 318
AfiI CCNNNNNNNGG 6 cut(s) 92, 329, 422, 493, 608, 671
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 1 cut(s) 576
AjnI CCWGG 3 cut(s) 505, 670, 808
AjuI GAANNNNNNNTTGG 2 cut(s) 658, 690
AluBI AGCT 4 cut(s) 380, 690, 729, 800
AluI AGCT 4 cut(s) 380, 690, 729, 800
Alw21I GWGCWC 2 cut(s) 382, 844
Alw44I GTGCAC 1 cut(s) 840
AlwI GGATC 7 cut(s) 86, 241, 286, 304, 436, 822, 835
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 1 cut(s) 484
ApaLI GTGCAC 1 cut(s) 840
ApeKI GCWGC 2 cut(s) 32, 518
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 3 cut(s) 242, 407, 503
AsuC2I CCSGG 2 cut(s) 219, 220
AsuHPI GGTGA 2 cut(s) 207, 261
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 3 cut(s) 242, 407, 503
BaeGI GKGCMC 1 cut(s) 844
BanII GRGCYC 1 cut(s) 382
Bbv12I GWGCWC 2 cut(s) 382, 844
BbvI GCAGC 2 cut(s) 44, 505
BccI CCATC 1 cut(s) 430
BciT130I CCWGG 3 cut(s) 507, 672, 810
BcnI CCSGG 2 cut(s) 219, 220
BfaI CTAG 2 cut(s) 45, 150
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 163
BisI GCNGC 3 cut(s) 33, 516, 519
BlsI GCNGC 3 cut(s) 34, 517, 520
Bme1390I CCNGG 5 cut(s) 219, 220, 507, 672, 810
Bme18I GGWCC 3 cut(s) 242, 407, 503
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 3 cut(s) 242, 407, 503
BmiI GGNNCC 3 cut(s) 243, 244, 504
BmrFI CCNGG 5 cut(s) 219, 220, 507, 672, 810
BmsI GCATC 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 234
BpuMI CCSGG 2 cut(s) 219, 220
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 6 cut(s) 218, 219, 421, 487, 536, 809
BsaWI WCCGGW 1 cut(s) 718
Bsc4I CCNNNNNNNGG 6 cut(s) 92, 329, 422, 493, 608, 671
Bse1I ACTGG 1 cut(s) 251
Bse3DI GCAATG 2 cut(s) 103, 504
BseBI CCWGG 3 cut(s) 507, 672, 810
BseDI CCNNGG 6 cut(s) 218, 219, 421, 487, 536, 809
BseLI CCNNNNNNNGG 6 cut(s) 92, 329, 422, 493, 608, 671
BseMI GCAATG 2 cut(s) 103, 504
BseMII CTCAG 3 cut(s) 158, 692, 705
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 273
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 2 cut(s) 44, 505
Bsh1236I CGCG 1 cut(s) 582
Bsh1285I CGRYCG 1 cut(s) 821
BshFI GGCC 1 cut(s) 486
BsiEI CGRYCG 1 cut(s) 821
BsiHKAI GWGCWC 2 cut(s) 382, 844
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 3 cut(s) 219, 375, 719
BslFI GGGAC 3 cut(s) 228, 305, 820
BslI CCNNNNNNNGG 6 cut(s) 92, 329, 422, 493, 608, 671
BsmFI GGGAC 3 cut(s) 228, 305, 820
BsmI GAATGC 2 cut(s) 372, 465
BsnI GGCC 1 cut(s) 486
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 382, 844
Bsp143I GATC 9 cut(s) 78, 160, 233, 278, 296, 428, 814, 827, 856
Bsp19I CCATGG 1 cut(s) 421
Bsp68I TCGCGA 1 cut(s) 582
BspACI CCGC 3 cut(s) 264, 426, 516
BspANI GGCC 1 cut(s) 486
BspCNI CTCAG 3 cut(s) 157, 691, 704
BspFNI CGCG 1 cut(s) 582
BspLI GGNNCC 3 cut(s) 243, 244, 504
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 163
BspPI GGATC 7 cut(s) 86, 241, 286, 304, 436, 822, 835
BsrDI GCAATG 2 cut(s) 103, 504
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 6 cut(s) 218, 219, 421, 487, 536, 809
BssMI GATC 9 cut(s) 78, 160, 233, 278, 296, 428, 814, 827, 856
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 3 cut(s) 421, 487, 536
Bst2UI CCWGG 3 cut(s) 507, 672, 810
Bst4CI ACNGT 3 cut(s) 637, 746, 794
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 42, 372
BstDEI CTNAG 4 cut(s) 144, 229, 678, 691
BstDSI CCRYGG 1 cut(s) 421
BstEII GGTNACC 1 cut(s) 267
BstFNI CGCG 1 cut(s) 582
BstKTI GATC 9 cut(s) 81, 163, 236, 281, 299, 431, 817, 830, 859
BstMBI GATC 9 cut(s) 78, 160, 233, 278, 296, 428, 814, 827, 856
BstMCI CGRYCG 1 cut(s) 821
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 3 cut(s) 507, 672, 810
BstNSI RCATGY 1 cut(s) 600
BstPI GGTNACC 1 cut(s) 267
BstSCI CCNGG 5 cut(s) 217, 218, 505, 670, 808
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 844
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 2 cut(s) 44, 505
BstX2I RGATCY 5 cut(s) 78, 233, 278, 428, 827
BstYI RGATCY 5 cut(s) 78, 233, 278, 428, 827
BsuRI GGCC 1 cut(s) 486
BtgI CCRYGG 1 cut(s) 421
BtuMI TCGCGA 1 cut(s) 582
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 42, 372
Cfr13I GGNCC 3 cut(s) 242, 407, 503
Cfr9I CCCGGG 1 cut(s) 218
CviAII CATG 4 cut(s) 422, 523, 597, 646
DdeI CTNAG 4 cut(s) 144, 229, 678, 691
DpnI GATC 9 cut(s) 80, 162, 235, 280, 298, 430, 816, 829, 858
DpnII GATC 9 cut(s) 78, 160, 233, 278, 296, 428, 814, 827, 856
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
EciI GGCGGA 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 380
Eco130I CCWWGG 3 cut(s) 421, 487, 536
Eco24I GRGCYC 1 cut(s) 382
Eco47I GGWCC 3 cut(s) 242, 407, 503
Eco53kI GAGCTC 1 cut(s) 380
Eco88I CYCGRG 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 380
EcoO109I RGGNCCY 2 cut(s) 242, 503
EcoO65I GGTNACC 1 cut(s) 267
EcoRII CCWGG 3 cut(s) 505, 670, 808
EcoT14I CCWWGG 3 cut(s) 421, 487, 536
EcoT38I GRGCYC 1 cut(s) 382
ErhI CCWWGG 3 cut(s) 421, 487, 536
FaeI CATG 4 cut(s) 425, 526, 600, 649
FaqI GGGAC 3 cut(s) 228, 305, 820
FatI CATG 4 cut(s) 421, 522, 596, 645
FauI CCCGC 1 cut(s) 257
FauNDI CATATG 2 cut(s) 274, 399
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 33, 516, 519
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 3 cut(s) 33, 516, 519
FspBI CTAG 2 cut(s) 45, 150
GluI GCNGC 3 cut(s) 33, 516, 519
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 486
HapII CCGG 3 cut(s) 219, 375, 719
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 4 cut(s) 425, 526, 600, 649
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 572
HpaII CCGG 3 cut(s) 219, 375, 719
HphI GGTGA 2 cut(s) 207, 261
Hpy166II GTNNAC 4 cut(s) 13, 103, 619, 842
Hpy188I TCNGA 3 cut(s) 603, 632, 694
Hpy188III TCNNGA 4 cut(s) 115, 405, 581, 769
Hpy8I GTNNAC 4 cut(s) 13, 103, 619, 842
HpyAV CCTTC 1 cut(s) 716
HpyCH4III ACNGT 3 cut(s) 637, 746, 794
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 8 cut(s) 126, 141, 158, 193, 657, 716, 780, 842
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 4 cut(s) 144, 229, 678, 691
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 4 cut(s) 425, 526, 600, 649
KflI GGGWCCC 1 cut(s) 242
Kzo9I GATC 9 cut(s) 78, 160, 233, 278, 296, 428, 814, 827, 856
LmnI GCTCC 5 cut(s) 184, 377, 726, 771, 797
Lsp1109I GCAGC 2 cut(s) 44, 505
LweI GCATC 1 cut(s) 516
MaeI CTAG 2 cut(s) 45, 150
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 3 cut(s) 3, 267, 641
MalI GATC 9 cut(s) 80, 162, 235, 280, 298, 430, 816, 829, 858
MboI GATC 9 cut(s) 78, 160, 233, 278, 296, 428, 814, 827, 856
MboII GAAGA 2 cut(s) 80, 860
MflI RGATCY 5 cut(s) 78, 233, 278, 428, 827
MhlI GDGCHC 2 cut(s) 382, 844
MluCI AATT 3 cut(s) 22, 136, 604
MnlI CCTC 5 cut(s) 258, 294, 318, 474, 642
MseI TTAA 2 cut(s) 291, 351
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 3 cut(s) 219, 375, 719
MspR9I CCNGG 5 cut(s) 219, 220, 507, 672, 810
Mva1269I GAATGC 2 cut(s) 372, 465
MvaI CCWGG 3 cut(s) 507, 672, 810
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 2 cut(s) 219, 220
NcoI CCATGG 1 cut(s) 421
NdeI CATATG 2 cut(s) 274, 399
NdeII GATC 9 cut(s) 78, 160, 233, 278, 296, 428, 814, 827, 856
NlaIII CATG 4 cut(s) 425, 526, 600, 649
NlaIV GGNNCC 3 cut(s) 243, 244, 504
NmuCI GTSAC 2 cut(s) 3, 267
NruI TCGCGA 1 cut(s) 582
NspI RCATGY 1 cut(s) 600
PciI ACATGT 1 cut(s) 596
PctI GAATGC 2 cut(s) 372, 465
PfeI GAWTC 1 cut(s) 572
PflMI CCANNNNNTGG 4 cut(s) 92, 329, 422, 671
PkrI GCNGC 3 cut(s) 34, 517, 520
PpuMI RGGWCCY 2 cut(s) 242, 503
PscI ACATGT 1 cut(s) 596
Psp124BI GAGCTC 1 cut(s) 382
Psp5II RGGWCCY 2 cut(s) 242, 503
Psp6I CCWGG 3 cut(s) 505, 670, 808
PspEI GGTNACC 1 cut(s) 267
PspGI CCWGG 3 cut(s) 505, 670, 808
PspN4I GGNNCC 3 cut(s) 243, 244, 504
PspPI GGNCC 3 cut(s) 242, 407, 503
PspPPI RGGWCCY 2 cut(s) 242, 503
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 5 cut(s) 78, 233, 278, 428, 827
RruI TCGCGA 1 cut(s) 582
SacI GAGCTC 1 cut(s) 382
SaqAI TTAA 2 cut(s) 291, 351
SatI GCNGC 3 cut(s) 33, 516, 519
Sau3AI GATC 9 cut(s) 78, 160, 233, 278, 296, 428, 814, 827, 856
Sau96I GGNCC 3 cut(s) 242, 407, 503
ScrFI CCNGG 5 cut(s) 219, 220, 507, 672, 810
SduI GDGCHC 2 cut(s) 382, 844
SfaNI GCATC 1 cut(s) 516
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 3 cut(s) 242, 407, 503
SmaI CCCGGG 1 cut(s) 220
Sse9I AATT 3 cut(s) 22, 136, 604
SsiI CCGC 3 cut(s) 264, 426, 516
SspMI CTAG 2 cut(s) 45, 150
SstI GAGCTC 1 cut(s) 382
StyD4I CCNGG 5 cut(s) 217, 218, 505, 670, 808
StyI CCWWGG 3 cut(s) 421, 487, 536
TaaI ACNGT 3 cut(s) 637, 746, 794
TaiI ACGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 821
TaqII GACCGA 1 cut(s) 807
TasI AATT 3 cut(s) 22, 136, 604
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 2 cut(s) 291, 351
Tru9I TTAA 2 cut(s) 291, 351
TseFI GTSAC 2 cut(s) 3, 267
TseI GCWGC 2 cut(s) 32, 518
Tsp45I GTSAC 2 cut(s) 3, 267
TspDTI ATGAA 3 cut(s) 15, 99, 567
TspGWI ACGGA 1 cut(s) 822
TspMI CCCGGG 1 cut(s) 218
Van91I CCANNNNNTGG 4 cut(s) 92, 329, 422, 671
VneI GTGCAC 1 cut(s) 840
VpaK11BI GGWCC 3 cut(s) 242, 407, 503
XapI RAATTY 1 cut(s) 22
XceI RCATGY 1 cut(s) 600
XmaI CCCGGG 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 2 cut(s) 45, 150
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.