Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004516

Physical Location & Seq

Genomic Coordinates Reverse (-)

26089061 .. 26092350

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23660.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCTCAGGTTGACAACAGAAATTCATCAGCGGCCAAGCGCGCTAGAACCGATGGGAGTAGAAGGGAGGATGATTGGACCTGCCCTGCGTGTGGGAATGTGAATTTCTCGTTTAGAACAACTTGCAATATGCGAAATTGCACTCAGCCGAGGCCGGCTGATCATAACTCGAAATCGGCTGCGAAGCCTTTCCAAGCCCCACAACCTTACACTTCAGCTCCTCCTTATGTGGGTTCTGCTGCGCCCTCCTCAATGTATCTTAGTGTGCCTCCATACGGTTCTTCTCTGTTTAATGGATCGTCCATTCCTCCCTATGAAGTTCCGTTCTCTGGGGGATCAGCATATCATTACAACTACGGCAATCGCCTATCGACAGGCAGCCCTTACAGACCTCTGCATTTGCCGGCACCTACGCCTTATTCTAGTGGATCCCTCATAGGAAATGGTGGATTATATAGTATTCCTCCTATGATGGATCGGTACGGCCTGGGACTCCCCCTGGGTCCTGGTCCTATGGGCCCAAGGCCAGGATTCTATCCCGATGACAAATCTCAAAAGAAAAGTGCAGATGCCACACGCGATAATGATTGGACGTGTCCAAAATGTGGAAACATCAACTTTTCATTTAGAATTGTCTGTAACATGAGGAAGTGCAATACGCCAAAGCCTGGATCTCAGGCTGCAAAGAATGACAAAAGTGCAAAGCAAAAGATGCCGGAAGGTAGCTGGAAGTGTGAGAAATGTAACAACATAAACTATCCATTCCGAACCAAGTGTAACAGACAGAATTGTGGAGAGGACAAACCAACCGAGTCAAAGAAATCCTCGTCACCTACTCCGGATGAAAGTGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

286

Amino Acids

31.13

Weight (kDa)

9.27

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67325 AT1G67325
fragaria_vesca	FvH4_4g23660 FvH4_4g23660 FvH4_4g23660
malus_domestica	MD16G1120200.v1.1
prunus_persica	Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1
pyrus_communis	pycom13g10460 pycom16g10270
rosa_chinensis	RchiOBHm_Chr4g0430131
rosa_laevigata	RLG00000007001
rosa_multiflora	Rmu_co8521931.1_g000001 Rmu_ssc0000150.1_g000022
rosa_roxburghii	Rroxscaffold_5G00371940
rosa_rugosa	Rorug04G0240600 Rorug04G0240600 Rorug04G0240700 Rorug04G0240800
rosa_samantha	Rh4AG297600 Rh4BG304000 Rh4CG319500 Rh4DG301400
rosa_wichuraiana	Rw4G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	406
AccB7I	CCANNNNNTGG	2 cut(s)	605, 668
AccII	CGCG	2 cut(s)	42, 579
AccIII	TCCGGA	1 cut(s)	838
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	6 cut(s)	304, 343, 423, 436, 483, 679
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	2 cut(s)	22, 103
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
AflIII	ACRYGT	1 cut(s)	593
AjiI	CACGTC	1 cut(s)	594
AjnI	CCWGG	5 cut(s)	486, 498, 505, 526, 667
AluBI	AGCT	2 cut(s)	218, 726
AluI	AGCT	2 cut(s)	218, 726
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	6 cut(s)	304, 343, 423, 436, 483, 679
Aor13HI	TCCGGA	1 cut(s)	838
AoxI	GGCC	5 cut(s)	33, 152, 484, 517, 524
ApaI	GGGCCC	1 cut(s)	521
ApeKI	GCWGC	4 cut(s)	179, 239, 378, 680
ApoI	RAATTY	2 cut(s)	22, 103
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	3 cut(s)	42, 44, 244
AspS9I	GGNCC	5 cut(s)	78, 503, 509, 517, 518
AsuHPI	GGTGA	1 cut(s)	822
AvaII	GGWCC	3 cut(s)	78, 503, 509
BaeGI	GKGCMC	1 cut(s)	521
BamHI	GGATCC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	521
BbvI	GCAGC	4 cut(s)	166, 226, 390, 667
BccI	CCATC	2 cut(s)	47, 466
BceAI	ACGGC	2 cut(s)	373, 499
BciT130I	CCWGG	5 cut(s)	488, 500, 507, 528, 669
BclI	TGATCA	2 cut(s)	160, 850
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	45, 423
BfuAI	ACCTGC	1 cut(s)	89
BisI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
BlsI	GCNGC	5 cut(s)	34, 181, 241, 380, 682
Bme1390I	CCNGG	5 cut(s)	488, 500, 507, 528, 669
Bme18I	GGWCC	3 cut(s)	78, 503, 509
BmgBI	CACGTC	1 cut(s)	594
BmgT120I	GGNCC	5 cut(s)	78, 503, 509, 517, 518
BmiI	GGNNCC	4 cut(s)	408, 430, 504, 519
BmrFI	CCNGG	5 cut(s)	488, 500, 507, 528, 669
BmsI	GCATC	2 cut(s)	559, 702
BsaJI	CCNNGG	5 cut(s)	149, 487, 498, 499, 521
BsaWI	WCCGGW	1 cut(s)	838
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
Bse118I	RCCGGY	2 cut(s)	154, 403
BseAI	TCCGGA	1 cut(s)	838
BseBI	CCWGG	5 cut(s)	488, 500, 507, 528, 669
BseDI	CCNNGG	5 cut(s)	149, 487, 498, 499, 521
BseGI	GGATG	2 cut(s)	76, 847
BseLI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
BseMII	CTCAG	3 cut(s)	20, 158, 689
BsePI	GCGCGC	1 cut(s)	40
BseRI	GAGGAG	2 cut(s)	210, 238
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	4 cut(s)	166, 226, 390, 667
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	2 cut(s)	42, 579
BshFI	GGCC	5 cut(s)	35, 154, 486, 519, 526
BshNI	GGYRCC	1 cut(s)	406
BsiSI	CCGG	4 cut(s)	155, 404, 716, 839
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	5 cut(s)	35, 154, 486, 519, 526
Bsp120I	GGGCCC	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp13I	TCCGGA	1 cut(s)	838
Bsp143I	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	5 cut(s)	35, 154, 486, 519, 526
BspCNI	CTCAG	3 cut(s)	19, 157, 688
BspEI	TCCGGA	1 cut(s)	838
BspFNI	CGCG	2 cut(s)	42, 579
BspLI	GGNNCC	4 cut(s)	408, 430, 504, 519
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	6 cut(s)	304, 343, 423, 436, 483, 679
BspT107I	GGYRCC	1 cut(s)	406
BsrFI	RCCGGY	2 cut(s)	154, 403
BssAI	RCCGGY	2 cut(s)	154, 403
BssECI	CCNNGG	5 cut(s)	149, 487, 498, 499, 521
BssHII	GCGCGC	1 cut(s)	40
BssMI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
BssT1I	CCWWGG	1 cut(s)	521
Bst2UI	CCWGG	5 cut(s)	488, 500, 507, 528, 669
Bst4CI	ACNGT	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	712
BstC8I	GCNNGC	3 cut(s)	42, 156, 405
BstDEI	CTNAG	4 cut(s)	6, 144, 260, 675
BstF5I	GGATG	2 cut(s)	76, 847
BstFNI	CGCG	2 cut(s)	42, 579
BstHHI	GCGC	3 cut(s)	42, 44, 244
BstKTI	GATC	7 cut(s)	163, 299, 338, 431, 478, 674, 853
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 712
BstNI	CCWGG	5 cut(s)	488, 500, 507, 528, 669
BstSCI	CCNGG	5 cut(s)	486, 498, 505, 526, 667
BstSLI	GKGCMC	1 cut(s)	521
BstUI	CGCG	2 cut(s)	42, 579
BstV1I	GCAGC	4 cut(s)	166, 226, 390, 667
BstX2I	RGATCY	2 cut(s)	428, 671
BstYI	RGATCY	2 cut(s)	428, 671
BsuRI	GGCC	5 cut(s)	35, 154, 486, 519, 526
BtrI	CACGTC	1 cut(s)	594
BtsCI	GGATG	2 cut(s)	76, 847
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	3 cut(s)	42, 156, 405
CfoI	GCGC	3 cut(s)	42, 44, 244
Cfr10I	RCCGGY	2 cut(s)	154, 403
Cfr13I	GGNCC	5 cut(s)	78, 503, 509, 517, 518
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	1 cut(s)	643
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	4 cut(s)	6, 144, 260, 675
DpnI	GATC	7 cut(s)	162, 298, 337, 430, 477, 673, 852
DpnII	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
EaeI	YGGCCR	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	521
Eco47I	GGWCC	3 cut(s)	78, 503, 509
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	503
EcoRII	CCWGG	5 cut(s)	486, 498, 505, 526, 667
EcoT14I	CCWWGG	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	1 cut(s)	646
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	1 cut(s)	642
FbaI	TGATCA	2 cut(s)	160, 850
Fnu4HI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
FokI	GGATG	2 cut(s)	83, 854
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
FspBI	CTAG	2 cut(s)	45, 423
GlaI	GCGC	3 cut(s)	41, 43, 243
GluI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
HaeIII	GGCC	5 cut(s)	35, 154, 486, 519, 526
HapII	CCGG	4 cut(s)	155, 404, 716, 839
HhaI	GCGC	3 cut(s)	42, 44, 244
Hin1II	CATG	1 cut(s)	646
Hin6I	GCGC	3 cut(s)	40, 42, 242
HinP1I	GCGC	3 cut(s)	40, 42, 242
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	3 cut(s)	492, 531, 812
HpaII	CCGG	4 cut(s)	155, 404, 716, 839
HphI	GGTGA	1 cut(s)	822
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	767
Hpy188III	TCNNGA	2 cut(s)	539, 839
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	57, 713
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	7 cut(s)	126, 141, 397, 566, 654, 683, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 712
HpyF3I	CTNAG	4 cut(s)	6, 144, 260, 675
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	1 cut(s)	646
HspAI	GCGC	3 cut(s)	40, 42, 242
Kpn2I	TCCGGA	1 cut(s)	838
KroI	GCCGGC	2 cut(s)	154, 403
KroNI	GCCGGC	2 cut(s)	156, 405
Ksp22I	TGATCA	2 cut(s)	160, 850
Kzo9I	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	4 cut(s)	166, 226, 390, 667
LweI	GCATC	2 cut(s)	559, 702
MaeI	CTAG	2 cut(s)	45, 423
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	4 cut(s)	638, 743, 776, 828
MalI	GATC	7 cut(s)	162, 298, 337, 430, 477, 673, 852
MboI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
MboII	GAAGA	1 cut(s)	273
MflI	RGATCY	2 cut(s)	428, 671
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	5 cut(s)	22, 103, 136, 630, 787
MlyI	GAGTC	2 cut(s)	486, 821
MroI	TCCGGA	1 cut(s)	838
MroNI	GCCGGC	2 cut(s)	154, 403
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	4 cut(s)	155, 404, 716, 839
MspR9I	CCNGG	5 cut(s)	488, 500, 507, 528, 669
MvaI	CCWGG	5 cut(s)	488, 500, 507, 528, 669
MvnI	CGCG	2 cut(s)	42, 579
MwoI	GCNNNNNNNGC	2 cut(s)	41, 712
NaeI	GCCGGC	2 cut(s)	156, 405
NdeII	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
NgoMIV	GCCGGC	2 cut(s)	154, 403
NlaIII	CATG	1 cut(s)	646
NlaIV	GGNNCC	4 cut(s)	408, 430, 504, 519
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	828
PasI	CCCWGGG	1 cut(s)	499
PauI	GCGCGC	1 cut(s)	40
PdiI	GCCGGC	2 cut(s)	156, 405
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	531
PflMI	CCANNNNNTGG	2 cut(s)	605, 668
PkrI	GCNGC	5 cut(s)	34, 181, 241, 380, 682
PleI	GAGTC	2 cut(s)	486, 820
PpsI	GAGTC	2 cut(s)	486, 820
PpuMI	RGGWCCY	1 cut(s)	503
Psp5II	RGGWCCY	1 cut(s)	503
Psp6I	CCWGG	5 cut(s)	486, 498, 505, 526, 667
PspGI	CCWGG	5 cut(s)	486, 498, 505, 526, 667
PspN4I	GGNNCC	4 cut(s)	408, 430, 504, 519
PspOMI	GGGCCC	1 cut(s)	517
PspPI	GGNCC	5 cut(s)	78, 503, 509, 517, 518
PspPPI	RGGWCCY	1 cut(s)	503
PsuI	RGATCY	2 cut(s)	428, 671
PteI	GCGCGC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
Sau3AI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
Sau96I	GGNCC	5 cut(s)	78, 503, 509, 517, 518
SchI	GAGTC	2 cut(s)	486, 821
ScrFI	CCNGG	5 cut(s)	488, 500, 507, 528, 669
SduI	GDGCHC	1 cut(s)	521
SfaNI	GCATC	2 cut(s)	559, 702
SinI	GGWCC	3 cut(s)	78, 503, 509
Sse9I	AATT	5 cut(s)	22, 103, 136, 630, 787
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	45, 423
StyD4I	CCNGG	5 cut(s)	486, 498, 505, 526, 667
StyI	CCWWGG	1 cut(s)	521
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	2 cut(s)	170, 371
TasI	AATT	5 cut(s)	22, 103, 136, 630, 787
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	531
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	828
TseI	GCWGC	4 cut(s)	179, 239, 378, 680
Tsp45I	GTSAC	1 cut(s)	828
TspDTI	ATGAA	4 cut(s)	15, 330, 612, 858
TspGWI	ACGGA	1 cut(s)	312
Van91I	CCANNNNNTGG	2 cut(s)	605, 668
VpaK11BI	GGWCC	3 cut(s)	78, 503, 509
XapI	RAATTY	2 cut(s)	22, 103
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	2 cut(s)	45, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.