Rh4DG301400

ranBP2-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004516
Physical Location & Seq
Reverse (-)
52289076 .. 52291228
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG301400.1

Sequence Viewer

Length: 729 bp
ATGCGTAATTGCACTCAGCCGAGGCCGGCTGATCATAACTCTAAATCGGCTGCAAAGCCTTTCCAAGCCCCACAACCATACTCTTCTGCTCCTCCGTATGTGGGTTCTGCTGCACCCTCCTCAATGTATCTTAGTGTGCCTCCATATGGTTCTTCTCTGTTCAATGGATCATCCATTCCTCCCTATGATGTTCCGTTTTCTGGGGGATCAGCATATCATTACAACTACGGCAATCGCCTGTCTACAGGCAGCCCCTACAGACCCCTGCATTTGCCTGCACCTACGCCTTATTCTAGTGGATCCCTGATAGGAAATGGTGGATTATACGGTATTCCTCCTATGATGGATCGGTATGGCCTTGGACTTCCCCTGGGCCCTGGTCCTATGGGGCCAAGGCCAGGATTCTATCCCGACGATAAATCTCAAAAGAAGAGTGCAGATGCCACACGCGATAATGACTGGACGTGCCCAAAATGTGGAAATATCAACTTTTCATTTAGAACTGTTTGTAACATGAGGAAGTGCAATACGCCAAAACCTGGATCTCAGGCTGCAAAGAATGACAAAAATGCAAAGCAAAAGATGCCGGAAGGTAGCTGGAAGTGTGAGAAATGTAATAACATAAACTATCCGTTCCGAACCAAGTGTAACAGACAGAATTGTGGAGAGGACAAACCAACCGAGTCAAAGAAGTCCTCTTCACCTGCTCCAGATGAAAATGATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

242

Amino Acids

26.27

Weight (kDa)

9.28

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 151 - 181 7.8e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 712
Acc36I ACCTGC 1 cut(s) 712
AccB7I CCANNNNNTGG 2 cut(s) 476, 539
AccI GTMKAC 1 cut(s) 242
AccII CGCG 1 cut(s) 450
AclWI GGATC 6 cut(s) 175, 214, 294, 307, 354, 550
AfiI CCNNNNNNNGG 6 cut(s) 101, 146, 200, 398, 476, 539
AgsI TTSAA 1 cut(s) 163
AjiI CACGTC 1 cut(s) 465
AjnI CCWGG 4 cut(s) 369, 376, 397, 538
AluBI AGCT 1 cut(s) 597
AluI AGCT 1 cut(s) 597
AlwI GGATC 6 cut(s) 175, 214, 294, 307, 354, 550
AoxI GGCC 5 cut(s) 23, 355, 373, 389, 395
ApaI GGGCCC 1 cut(s) 377
ApeKI GCWGC 4 cut(s) 50, 110, 249, 551
AspS9I GGNCC 4 cut(s) 373, 374, 380, 389
AsuHPI GGTGA 1 cut(s) 693
AvaII GGWCC 1 cut(s) 380
BaeGI GKGCMC 2 cut(s) 377, 470
BamHI GGATCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 377
BbvI GCAGC 4 cut(s) 37, 97, 261, 538
BccI CCATC 1 cut(s) 337
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 4 cut(s) 371, 378, 399, 540
BclI TGATCA 2 cut(s) 31, 721
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 2 cut(s) 243, 256
BfuAI ACCTGC 1 cut(s) 712
BisI GCNGC 4 cut(s) 51, 111, 250, 552
BlsI GCNGC 4 cut(s) 52, 112, 251, 553
Bme1390I CCNGG 4 cut(s) 371, 378, 399, 540
Bme18I GGWCC 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 465
BmgT120I GGNCC 4 cut(s) 373, 374, 380, 389
BmiI GGNNCC 3 cut(s) 301, 375, 390
BmrFI CCNGG 4 cut(s) 371, 378, 399, 540
BmsI GCATC 2 cut(s) 430, 573
BpmI CTGGAG 1 cut(s) 693
BsaJI CCNNGG 6 cut(s) 20, 358, 369, 370, 376, 392
Bsc4I CCNNNNNNNGG 6 cut(s) 101, 146, 200, 398, 476, 539
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 464
BseBI CCWGG 4 cut(s) 371, 378, 399, 540
BseDI CCNNGG 6 cut(s) 20, 358, 369, 370, 376, 392
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 6 cut(s) 101, 146, 200, 398, 476, 539
BseMII CTCAG 2 cut(s) 29, 560
BseNI ACTGG 1 cut(s) 464
BseRI GAGGAG 2 cut(s) 81, 109
BseSI GKGCMC 2 cut(s) 377, 470
BseXI GCAGC 4 cut(s) 37, 97, 261, 538
BsgI GTGCAG 3 cut(s) 96, 261, 456
Bsh1236I CGCG 1 cut(s) 450
BshFI GGCC 5 cut(s) 25, 357, 375, 391, 397
BsiSI CCGG 2 cut(s) 26, 587
BslI CCNNNNNNNGG 6 cut(s) 101, 146, 200, 398, 476, 539
BsnI GGCC 5 cut(s) 25, 357, 375, 391, 397
Bsp120I GGGCCC 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 377, 470
Bsp143I GATC 7 cut(s) 31, 167, 206, 299, 346, 542, 721
BspANI GGCC 5 cut(s) 25, 357, 375, 391, 397
BspCNI CTCAG 2 cut(s) 28, 559
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 301, 375, 390
BspMI ACCTGC 1 cut(s) 712
BspPI GGATC 6 cut(s) 175, 214, 294, 307, 354, 550
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 464
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 6 cut(s) 20, 358, 369, 370, 376, 392
BssMI GATC 7 cut(s) 31, 167, 206, 299, 346, 542, 721
BssT1I CCWWGG 2 cut(s) 358, 392
Bst2UI CCWGG 4 cut(s) 371, 378, 399, 540
Bst4CI ACNGT 2 cut(s) 329, 505
Bst6I CTCTTC 3 cut(s) 88, 425, 703
BstAPI GCANNNNNTGC 1 cut(s) 583
BstC8I GCNNGC 2 cut(s) 27, 276
BstDEI CTNAG 3 cut(s) 15, 131, 546
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 7 cut(s) 34, 170, 209, 302, 349, 545, 724
BstMBI GATC 7 cut(s) 31, 167, 206, 299, 346, 542, 721
BstMWI GCNNNNNNNGC 1 cut(s) 583
BstNI CCWGG 4 cut(s) 371, 378, 399, 540
BstSCI CCNGG 4 cut(s) 369, 376, 397, 538
BstSFI CTRYAG 2 cut(s) 243, 256
BstSLI GKGCMC 2 cut(s) 377, 470
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 4 cut(s) 37, 97, 261, 538
BstX2I RGATCY 2 cut(s) 299, 542
BstYI RGATCY 2 cut(s) 299, 542
BsuRI GGCC 5 cut(s) 25, 357, 375, 391, 397
BtrI CACGTC 1 cut(s) 465
BtsCI GGATG 1 cut(s) 170
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 2 cut(s) 27, 276
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 4 cut(s) 373, 374, 380, 389
CviAII CATG 1 cut(s) 514
DdeI CTNAG 3 cut(s) 15, 131, 546
DpnI GATC 7 cut(s) 33, 169, 208, 301, 348, 544, 723
DpnII GATC 7 cut(s) 31, 167, 206, 299, 346, 542, 721
Eam1104I CTCTTC 3 cut(s) 88, 425, 703
EarI CTCTTC 3 cut(s) 88, 425, 703
Eco130I CCWWGG 2 cut(s) 358, 392
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 374
EcoRII CCWGG 4 cut(s) 369, 376, 397, 538
EcoT14I CCWWGG 2 cut(s) 358, 392
EcoT38I GRGCYC 1 cut(s) 377
ErhI CCWWGG 2 cut(s) 358, 392
FaeI CATG 1 cut(s) 517
FatI CATG 1 cut(s) 513
FauNDI CATATG 1 cut(s) 145
FbaI TGATCA 2 cut(s) 31, 721
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 4 cut(s) 51, 111, 250, 552
FokI GGATG 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 4 cut(s) 51, 111, 250, 552
FspBI CTAG 1 cut(s) 294
GluI GCNGC 4 cut(s) 51, 111, 250, 552
GsuI CTGGAG 1 cut(s) 693
HaeIII GGCC 5 cut(s) 25, 357, 375, 391, 397
HapII CCGG 2 cut(s) 26, 587
Hin1II CATG 1 cut(s) 517
HinfI GANTC 2 cut(s) 402, 683
HpaII CCGG 2 cut(s) 26, 587
HphI GGTGA 1 cut(s) 693
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 1 cut(s) 638
Hpy188III TCNNGA 2 cut(s) 410, 710
Hpy8I GTNNAC 1 cut(s) 243
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 2 cut(s) 329, 505
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 9 cut(s) 12, 53, 113, 268, 278, 437, 525, 554, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 583
HpyF3I CTNAG 3 cut(s) 15, 131, 546
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 1 cut(s) 517
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Ksp22I TGATCA 2 cut(s) 31, 721
Kzo9I GATC 7 cut(s) 31, 167, 206, 299, 346, 542, 721
LmnI GCTCC 2 cut(s) 94, 712
Lsp1109I GCAGC 4 cut(s) 37, 97, 261, 538
LweI GCATC 2 cut(s) 430, 573
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 2 cut(s) 509, 647
MalI GATC 7 cut(s) 33, 169, 208, 301, 348, 544, 723
MboI GATC 7 cut(s) 31, 167, 206, 299, 346, 542, 721
MboII GAAGA 4 cut(s) 75, 144, 442, 690
MflI RGATCY 2 cut(s) 299, 542
MhlI GDGCHC 2 cut(s) 377, 470
MluCI AATT 2 cut(s) 7, 658
MlyI GAGTC 1 cut(s) 692
MroNI GCCGGC 1 cut(s) 25
MspI CCGG 2 cut(s) 26, 587
MspR9I CCNGG 4 cut(s) 371, 378, 399, 540
MvaI CCWGG 4 cut(s) 371, 378, 399, 540
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 583
NaeI GCCGGC 1 cut(s) 27
NdeI CATATG 1 cut(s) 145
NdeII GATC 7 cut(s) 31, 167, 206, 299, 346, 542, 721
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 1 cut(s) 517
NlaIV GGNNCC 3 cut(s) 301, 375, 390
NmeAIII GCCGAG 1 cut(s) 45
PaqCI CACCTGC 1 cut(s) 712
PasI CCCWGGG 1 cut(s) 370
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 402
PflMI CCANNNNNTGG 2 cut(s) 476, 539
PkrI GCNGC 4 cut(s) 52, 112, 251, 553
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
Psp6I CCWGG 4 cut(s) 369, 376, 397, 538
PspGI CCWGG 4 cut(s) 369, 376, 397, 538
PspN4I GGNNCC 3 cut(s) 301, 375, 390
PspOMI GGGCCC 1 cut(s) 373
PspPI GGNCC 4 cut(s) 373, 374, 380, 389
PsuI RGATCY 2 cut(s) 299, 542
SatI GCNGC 4 cut(s) 51, 111, 250, 552
Sau3AI GATC 7 cut(s) 31, 167, 206, 299, 346, 542, 721
Sau96I GGNCC 4 cut(s) 373, 374, 380, 389
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 4 cut(s) 371, 378, 399, 540
SduI GDGCHC 2 cut(s) 377, 470
SetI ASST 6 cut(s) 283, 467, 541, 595, 599, 706
SfaNI GCATC 2 cut(s) 430, 573
SfcI CTRYAG 2 cut(s) 243, 256
SinI GGWCC 1 cut(s) 380
Sse9I AATT 2 cut(s) 7, 658
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 4 cut(s) 369, 376, 397, 538
StyI CCWWGG 2 cut(s) 358, 392
TaaI ACNGT 2 cut(s) 329, 505
TaiI ACGT 1 cut(s) 467
TasI AATT 2 cut(s) 7, 658
TfiI GAWTC 1 cut(s) 402
TseI GCWGC 4 cut(s) 50, 110, 249, 551
TspDTI ATGAA 2 cut(s) 483, 729
TspGWI ACGGA 3 cut(s) 84, 183, 621
Van91I CCANNNNNTGG 2 cut(s) 476, 539
VpaK11BI GGWCC 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 242
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.