Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004516

Physical Location & Seq

Genomic Coordinates Forward (+)

8615209 .. 8619238

Gene Structure 4030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1120200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCTCAGGTTGATAATAGAAATTCTTCAGCAGCCAAGCGTGCTAGAACCGATGGTAGTCGAAGGGAAGATGATTGGACCTGCCCTAGCTGTGGGAATGATAATTTTTCATTTAGAACGACTTGCAATATGCGTAATTGCACTCAGCCAAGGCCTGCGGATCATAACTCAAAACCCACTGCTAAGCCTTTCCCTGCCCCACAAGGTTTTCTGGGCTCTGCTGCTCCTTATCTGGGCTCTGCTGCACCCTCCTCAATGTATCTTGGTGTGCCACCCTATGGTTCTTCTATCTTCAATGGATCATCCGTTCCTCCCTATGATGTTCCATTTTCAGGGGGATCAGCATATCATTACAACTATGGCAGCCACCTATCTACAGGCAGCCCCTACAGACCTCTGCATTTGTCTGGACCAACACCATATTCTAGTGGATCCATGATTGGAAATGGTGGAATGTATGGTATGCCCCCTCCTATGATGGATCGGTTTGGCCTGGGTCTGCCCATGGGCCCTGGCCCTATGGGACCAAGGCCAGGATTCCTTCCAGATGATAAAGCCCAAAAGAAGAGCACAGATGCTACACGTGACAATGACTGGGCATGCCCAAAATGTGGAAATGTCAACTTCTCATTTAGAACTGTTTGTAACATGAGGAAGTGCAATACGCCAAAGCCTGGATCTCAGCCTGCAAAGAGTGACAAAACTTCTAAACAAAAAATGCCAGAAGGTAGCTGGAAGTGTGAGAAATGTAATAATATAAACTATCCATTTAGAACCAAGTGTAACAGACAGAACTGTGGAGCGGACAAACCAGCCGAGTCAAAGAAGTCCCCTTCACCTGCTCCGAATGAAAATAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

288

Amino Acids

31.02

Weight (kDa)

9.36

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	22 - 44	3.3e-06	Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP	PF00641	241 - 271	2.2e-06	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67325 AT1G67325
fragaria_vesca	FvH4_4g23660 FvH4_4g23660 FvH4_4g23660
malus_domestica	MD16G1120200.v1.1
prunus_persica	Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1
pyrus_communis	pycom13g10460 pycom16g10270
rosa_chinensis	RchiOBHm_Chr4g0430131
rosa_laevigata	RLG00000007001
rosa_multiflora	Rmu_co8521931.1_g000001 Rmu_ssc0000150.1_g000022
rosa_roxburghii	Rroxscaffold_5G00371940
rosa_rugosa	Rorug04G0240600 Rorug04G0240600 Rorug04G0240700 Rorug04G0240800
rosa_samantha	Rh4AG297600 Rh4BG304000 Rh4CG319500 Rh4DG301400
rosa_wichuraiana	Rw4G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	847
Acc36I	ACCTGC	2 cut(s)	89, 847
AccB7I	CCANNNNNTGG	3 cut(s)	278, 611, 674
AccBSI	CCGCTC	1 cut(s)	803
AciI	CCGC	2 cut(s)	158, 803
AclWI	GGATC	7 cut(s)	168, 307, 346, 426, 439, 489, 685
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	12
AcvI	CACGTG	1 cut(s)	584
AfiI	CCNNNNNNNGG	7 cut(s)	92, 233, 278, 332, 533, 611, 674
AflIII	ACRYGT	1 cut(s)	581
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	4 cut(s)	492, 511, 532, 673
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	2 cut(s)	90, 732
AluI	AGCT	2 cut(s)	90, 732
Alw21I	GWGCWC	1 cut(s)	572
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	7 cut(s)	168, 307, 346, 426, 439, 489, 685
AoxI	GGCC	5 cut(s)	152, 490, 508, 514, 530
ApaI	GGGCCC	1 cut(s)	512
ApeKI	GCWGC	5 cut(s)	32, 221, 242, 363, 381
ApoI	RAATTY	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	25
AspS9I	GGNCC	6 cut(s)	78, 410, 508, 509, 515, 524
AsuHPI	GGTGA	1 cut(s)	828
AvaII	GGWCC	3 cut(s)	78, 410, 524
BaeGI	GKGCMC	1 cut(s)	512
BamHI	GGATCC	1 cut(s)	431
BanII	GRGCYC	3 cut(s)	218, 239, 512
BbrPI	CACGTG	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	572
BbvI	GCAGC	5 cut(s)	44, 208, 229, 375, 393
BccI	CCATC	2 cut(s)	47, 472
BciT130I	CCWGG	4 cut(s)	494, 513, 534, 675
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	45, 87, 426
BfmI	CTRYAG	2 cut(s)	375, 388
BfuAI	ACCTGC	2 cut(s)	89, 847
BisI	GCNGC	5 cut(s)	33, 222, 243, 364, 382
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	5 cut(s)	34, 223, 244, 365, 383
Bme1390I	CCNGG	4 cut(s)	494, 513, 534, 675
Bme18I	GGWCC	3 cut(s)	78, 410, 524
BmgT120I	GGNCC	6 cut(s)	78, 410, 508, 509, 515, 524
BmiI	GGNNCC	3 cut(s)	433, 510, 525
BmrFI	CCNGG	4 cut(s)	494, 513, 534, 675
BmrI	ACTGGG	1 cut(s)	604
BmsI	GCATC	1 cut(s)	565
BmuI	ACTGGG	1 cut(s)	604
Bpu1102I	GCTNAGC	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	584
BsaJI	CCNNGG	5 cut(s)	149, 493, 504, 511, 527
Bsc4I	CCNNNNNNNGG	7 cut(s)	92, 233, 278, 332, 533, 611, 674
Bse1I	ACTGG	1 cut(s)	599
BseBI	CCWGG	4 cut(s)	494, 513, 534, 675
BseDI	CCNNGG	5 cut(s)	149, 493, 504, 511, 527
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	7 cut(s)	92, 233, 278, 332, 533, 611, 674
BseMII	CTCAG	3 cut(s)	20, 158, 695
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	512
BseXI	GCAGC	5 cut(s)	44, 208, 229, 375, 393
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	5 cut(s)	154, 492, 510, 516, 532
BsiHKAI	GWGCWC	1 cut(s)	572
BslFI	GGGAC	2 cut(s)	537, 814
BslI	CCNNNNNNNGG	7 cut(s)	92, 233, 278, 332, 533, 611, 674
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	537, 814
BsnI	GGCC	5 cut(s)	154, 492, 510, 516, 532
Bsp120I	GGGCCC	1 cut(s)	508
Bsp1286I	GDGCHC	4 cut(s)	218, 239, 512, 572
Bsp143I	GATC	6 cut(s)	160, 299, 338, 431, 481, 677
Bsp1720I	GCTNAGC	1 cut(s)	183
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	2 cut(s)	158, 803
BspANI	GGCC	5 cut(s)	154, 492, 510, 516, 532
BspCNI	CTCAG	3 cut(s)	19, 157, 694
BspLI	GGNNCC	3 cut(s)	433, 510, 525
BspMI	ACCTGC	2 cut(s)	89, 847
BspPI	GGATC	7 cut(s)	168, 307, 346, 426, 439, 489, 685
BspQI	GCTCTTC	1 cut(s)	560
BsrBI	CCGCTC	1 cut(s)	803
BsrI	ACTGG	1 cut(s)	599
BssECI	CCNNGG	5 cut(s)	149, 493, 504, 511, 527
BssMI	GATC	6 cut(s)	160, 299, 338, 431, 481, 677
BssT1I	CCWWGG	3 cut(s)	149, 504, 527
Bst2UI	CCWGG	4 cut(s)	494, 513, 534, 675
Bst4CI	ACNGT	2 cut(s)	640, 797
Bst6I	CTCTTC	1 cut(s)	560
BstBAI	YACGTR	1 cut(s)	584
BstC8I	GCNNGC	4 cut(s)	42, 156, 601, 687
BstDEI	CTNAG	4 cut(s)	6, 144, 183, 681
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	302
BstKTI	GATC	6 cut(s)	163, 302, 341, 434, 484, 680
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	6 cut(s)	160, 299, 338, 431, 481, 677
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	4 cut(s)	494, 513, 534, 675
BstNSI	RCATGY	1 cut(s)	603
BstSCI	CCNGG	4 cut(s)	492, 511, 532, 673
BstSFI	CTRYAG	2 cut(s)	375, 388
BstSLI	GKGCMC	1 cut(s)	512
BstV1I	GCAGC	5 cut(s)	44, 208, 229, 375, 393
BstX2I	RGATCY	2 cut(s)	431, 677
BstYI	RGATCY	2 cut(s)	431, 677
BsuRI	GGCC	5 cut(s)	154, 492, 510, 516, 532
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	302
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	2 cut(s)	89, 847
Cac8I	GCNNGC	4 cut(s)	42, 156, 601, 687
Cfr13I	GGNCC	6 cut(s)	78, 410, 508, 509, 515, 524
CviAII	CATG	4 cut(s)	436, 505, 600, 649
DdeI	CTNAG	4 cut(s)	6, 144, 183, 681
DpnI	GATC	6 cut(s)	162, 301, 340, 433, 483, 679
DpnII	GATC	6 cut(s)	160, 299, 338, 431, 481, 677
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	3 cut(s)	149, 504, 527
Eco147I	AGGCCT	1 cut(s)	154
Eco24I	GRGCYC	3 cut(s)	218, 239, 512
Eco47I	GGWCC	3 cut(s)	78, 410, 524
Eco57I	CTGAAG	1 cut(s)	12
Eco72I	CACGTG	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	509
EcoRII	CCWGG	4 cut(s)	492, 511, 532, 673
EcoT14I	CCWWGG	3 cut(s)	149, 504, 527
EcoT38I	GRGCYC	3 cut(s)	218, 239, 512
ErhI	CCWWGG	3 cut(s)	149, 504, 527
FaeI	CATG	4 cut(s)	439, 508, 603, 652
FaqI	GGGAC	2 cut(s)	537, 814
FatI	CATG	4 cut(s)	435, 504, 599, 648
Fnu4HI	GCNGC	5 cut(s)	33, 222, 243, 364, 382
FokI	GGATG	1 cut(s)	289
FriOI	GRGCYC	3 cut(s)	218, 239, 512
Fsp4HI	GCNGC	5 cut(s)	33, 222, 243, 364, 382
FspBI	CTAG	3 cut(s)	45, 87, 426
GluI	GCNGC	5 cut(s)	33, 222, 243, 364, 382
HaeIII	GGCC	5 cut(s)	154, 492, 510, 516, 532
Hin1II	CATG	4 cut(s)	439, 508, 603, 652
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	2 cut(s)	537, 818
HphI	GGTGA	1 cut(s)	828
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	1 cut(s)	846
Hpy188III	TCNNGA	2 cut(s)	408, 545
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	4 cut(s)	57, 551, 719, 843
HpyCH4III	ACNGT	2 cut(s)	640, 797
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	6 cut(s)	126, 141, 245, 400, 660, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	4 cut(s)	6, 144, 183, 681
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	4 cut(s)	439, 508, 603, 652
Kzo9I	GATC	6 cut(s)	160, 299, 338, 431, 481, 677
LguI	GCTCTTC	1 cut(s)	560
LmnI	GCTCC	3 cut(s)	229, 800, 847
Lsp1109I	GCAGC	5 cut(s)	44, 208, 229, 375, 393
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	3 cut(s)	45, 87, 426
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	4 cut(s)	584, 644, 695, 782
MalI	GATC	6 cut(s)	162, 301, 340, 433, 483, 679
MbiI	CCGCTC	1 cut(s)	803
MboI	GATC	6 cut(s)	160, 299, 338, 431, 481, 677
MboII	GAAGA	5 cut(s)	18, 80, 276, 283, 577
MflI	RGATCY	2 cut(s)	431, 677
MhlI	GDGCHC	4 cut(s)	218, 239, 512, 572
MluCI	AATT	3 cut(s)	22, 103, 136
MlyI	GAGTC	1 cut(s)	827
MnlI	CCTC	6 cut(s)	259, 262, 321, 405, 480, 645
MroXI	GAANNNNTTC	1 cut(s)	25
MspR9I	CCNGG	4 cut(s)	494, 513, 534, 675
MvaI	CCWGG	4 cut(s)	494, 513, 534, 675
MwoI	GCNNNNNNNGC	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	6 cut(s)	160, 299, 338, 431, 481, 677
NlaIII	CATG	4 cut(s)	439, 508, 603, 652
NlaIV	GGNNCC	3 cut(s)	433, 510, 525
NmeAIII	GCCGAG	1 cut(s)	841
NmuCI	GTSAC	2 cut(s)	584, 695
NspI	RCATGY	1 cut(s)	603
PaeI	GCATGC	1 cut(s)	603
PaqCI	CACCTGC	1 cut(s)	847
PceI	AGGCCT	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	537
PflMI	CCANNNNNTGG	3 cut(s)	278, 611, 674
PkrI	GCNGC	5 cut(s)	34, 223, 244, 365, 383
PleI	GAGTC	1 cut(s)	826
PmaCI	CACGTG	1 cut(s)	584
PmlI	CACGTG	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	826
Ppu21I	YACGTR	1 cut(s)	584
Psp6I	CCWGG	4 cut(s)	492, 511, 532, 673
PspCI	CACGTG	1 cut(s)	584
PspGI	CCWGG	4 cut(s)	492, 511, 532, 673
PspN4I	GGNNCC	3 cut(s)	433, 510, 525
PspOMI	GGGCCC	1 cut(s)	508
PspPI	GGNCC	6 cut(s)	78, 410, 508, 509, 515, 524
PsuI	RGATCY	2 cut(s)	431, 677
SapI	GCTCTTC	1 cut(s)	560
SatI	GCNGC	5 cut(s)	33, 222, 243, 364, 382
Sau3AI	GATC	6 cut(s)	160, 299, 338, 431, 481, 677
Sau96I	GGNCC	6 cut(s)	78, 410, 508, 509, 515, 524
SchI	GAGTC	1 cut(s)	827
ScrFI	CCNGG	4 cut(s)	494, 513, 534, 675
SduI	GDGCHC	4 cut(s)	218, 239, 512, 572
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	2 cut(s)	375, 388
SinI	GGWCC	3 cut(s)	78, 410, 524
SphI	GCATGC	1 cut(s)	603
Sse9I	AATT	3 cut(s)	22, 103, 136
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	2 cut(s)	158, 803
SspMI	CTAG	3 cut(s)	45, 87, 426
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	4 cut(s)	492, 511, 532, 673
StyI	CCWWGG	3 cut(s)	149, 504, 527
TaaI	ACNGT	2 cut(s)	640, 797
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	61
TasI	AATT	3 cut(s)	22, 103, 136
TfiI	GAWTC	1 cut(s)	537
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	2 cut(s)	584, 695
TseI	GCWGC	5 cut(s)	32, 221, 242, 363, 381
Tsp45I	GTSAC	2 cut(s)	584, 695
TspDTI	ATGAA	2 cut(s)	99, 864
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	1 cut(s)	184
Van91I	CCANNNNNTGG	3 cut(s)	278, 611, 674
VpaK11BI	GGWCC	3 cut(s)	78, 410, 524
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	603
XcmI	CCANNNNNNNNNTGG	1 cut(s)	729
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	3 cut(s)	45, 87, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.