Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004516

Physical Location & Seq

Genomic Coordinates Reverse (-)

53418704 .. 53421782

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCTCAGGTTGACAACAGAAATTCATCAGCAGCCAAGCGTGCTAGAACCGACGGGAGTAGAAGGGAGGATGATTGGACCTGCCCTGCGTGTGGGAATGTGAATTTCTCGTTTAGAACAACTTGCAATATGCGTAATTGTACTCAGCCGAGGCCGGCTGATCATAACTCTAAATCGGCTGCTAAGCCTTTCCAAGCCCCACAACCTTACTCTTCTGCTCCTCCTTATGTGGGTTCTGCTGCACCCTCCTCAATGTATCTTAGTGTGCCTCCATATGGTTCTTCTCTGTTCAATGGATCATCCATTCCTCCCTATGATGTTCCGTTTTCTGGGGGATCAGCATATCATTATAACTATGGCAATCGCCTGTCTACAGGCAGCCCCTACAGACCTTTGCATTTGCCTGCACCTACGCCTTATTCTAGTGGATCCTTGATAGGAAATGGTGGATTATATGGTATTCCTCCTATGATGGATCGGTATGGCCTTGGACTTCCCCTGGGCCCTGGTCCTATGGGGCCAAGGCCAGGATTCTATCCCGACGATAAATCTCAAAAGAAGAGTGCAGATGCCACACGCGATAATGACTGGACGTGCCCAAAATGCGGAAATATCAACTTTTCATTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCTCAGGCTGCAAAGAATGACAAAAGTGCAAAGCAAAAGATGCCGGAAGGTAGCTGGAAGTGTGAGAAATGTAATAACATAAACTATCCGTTCCGAACCAAGTGTAACAGACAGAATTGTGGGGAGGACAAACCAACCGAGTCAAAGAAGTCCTCTTCACCTGCTCCAGATGAAAATGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

285

Amino Acids

31.05

Weight (kDa)

9.27

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	22 - 44	8.5e-06	Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP	PF00641	194 - 224	9.8e-06	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67325 AT1G67325
fragaria_vesca	FvH4_4g23660 FvH4_4g23660 FvH4_4g23660
malus_domestica	MD16G1120200.v1.1
prunus_persica	Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1
pyrus_communis	pycom13g10460 pycom16g10270
rosa_chinensis	RchiOBHm_Chr4g0430131
rosa_laevigata	RLG00000007001
rosa_multiflora	Rmu_co8521931.1_g000001 Rmu_ssc0000150.1_g000022
rosa_roxburghii	Rroxscaffold_5G00371940
rosa_rugosa	Rorug04G0240600 Rorug04G0240600 Rorug04G0240700 Rorug04G0240800
rosa_samantha	Rh4AG297600 Rh4BG304000 Rh4CG319500 Rh4DG301400
rosa_wichuraiana	Rw4G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AarI	CACCTGC	1 cut(s)	841
Acc36I	ACCTGC	2 cut(s)	89, 841
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	371
AccII	CGCG	1 cut(s)	579
AciI	CCGC	1 cut(s)	606
AclWI	GGATC	6 cut(s)	304, 343, 423, 436, 483, 679
AcsI	RAATTY	2 cut(s)	22, 103
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
AgsI	TTSAA	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	594
AjnI	CCWGG	4 cut(s)	498, 505, 526, 667
AluBI	AGCT	1 cut(s)	726
AluI	AGCT	1 cut(s)	726
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	6 cut(s)	304, 343, 423, 436, 483, 679
AoxI	GGCC	5 cut(s)	152, 484, 502, 518, 524
ApaI	GGGCCC	1 cut(s)	506
ApeKI	GCWGC	5 cut(s)	32, 179, 239, 378, 680
ApoI	RAATTY	2 cut(s)	22, 103
AspS9I	GGNCC	5 cut(s)	78, 502, 503, 509, 518
AsuHPI	GGTGA	1 cut(s)	822
AvaII	GGWCC	2 cut(s)	78, 509
BaeGI	GKGCMC	2 cut(s)	506, 599
BamHI	GGATCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	506
BbvI	GCAGC	5 cut(s)	44, 166, 226, 390, 667
BccI	CCATC	1 cut(s)	466
BciT130I	CCWGG	4 cut(s)	500, 507, 528, 669
BclI	TGATCA	2 cut(s)	160, 850
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	45, 423
BfmI	CTRYAG	2 cut(s)	372, 385
BfuAI	ACCTGC	2 cut(s)	89, 841
BisI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	5 cut(s)	34, 181, 241, 380, 682
Bme1390I	CCNGG	4 cut(s)	500, 507, 528, 669
Bme18I	GGWCC	2 cut(s)	78, 509
BmgBI	CACGTC	1 cut(s)	594
BmgT120I	GGNCC	5 cut(s)	78, 502, 503, 509, 518
BmiI	GGNNCC	3 cut(s)	430, 504, 519
BmrFI	CCNGG	4 cut(s)	500, 507, 528, 669
BmsI	GCATC	2 cut(s)	559, 702
BpmI	CTGGAG	1 cut(s)	822
Bpu1102I	GCTNAGC	1 cut(s)	183
BsaJI	CCNNGG	6 cut(s)	149, 487, 498, 499, 505, 521
Bsc4I	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	593
BseBI	CCWGG	4 cut(s)	500, 507, 528, 669
BseDI	CCNNGG	6 cut(s)	149, 487, 498, 499, 505, 521
BseGI	GGATG	2 cut(s)	76, 299
BseLI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
BseMII	CTCAG	3 cut(s)	20, 158, 689
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	2 cut(s)	210, 238
BseSI	GKGCMC	2 cut(s)	506, 599
BseXI	GCAGC	5 cut(s)	44, 166, 226, 390, 667
BsgI	GTGCAG	3 cut(s)	225, 390, 585
Bsh1236I	CGCG	1 cut(s)	579
BshFI	GGCC	5 cut(s)	154, 486, 504, 520, 526
BsiSI	CCGG	2 cut(s)	155, 716
BslI	CCNNNNNNNGG	7 cut(s)	92, 230, 275, 329, 527, 605, 668
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	5 cut(s)	154, 486, 504, 520, 526
Bsp120I	GGGCCC	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	506, 599
Bsp143I	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	606
BspANI	GGCC	5 cut(s)	154, 486, 504, 520, 526
BspCNI	CTCAG	3 cut(s)	19, 157, 688
BspFNI	CGCG	1 cut(s)	579
BspLI	GGNNCC	3 cut(s)	430, 504, 519
BspMI	ACCTGC	2 cut(s)	89, 841
BspPI	GGATC	6 cut(s)	304, 343, 423, 436, 483, 679
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	593
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	6 cut(s)	149, 487, 498, 499, 505, 521
BssMI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
BssT1I	CCWWGG	2 cut(s)	487, 521
Bst2UI	CCWGG	4 cut(s)	500, 507, 528, 669
Bst4CI	ACNGT	1 cut(s)	634
Bst6I	CTCTTC	3 cut(s)	217, 554, 832
BstAPI	GCANNNNNTGC	1 cut(s)	712
BstC8I	GCNNGC	3 cut(s)	42, 156, 405
BstDEI	CTNAG	5 cut(s)	6, 144, 183, 260, 675
BstF5I	GGATG	2 cut(s)	76, 299
BstFNI	CGCG	1 cut(s)	579
BstKTI	GATC	7 cut(s)	163, 299, 338, 431, 478, 674, 853
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 603, 712
BstNI	CCWGG	4 cut(s)	500, 507, 528, 669
BstSCI	CCNGG	4 cut(s)	498, 505, 526, 667
BstSFI	CTRYAG	2 cut(s)	372, 385
BstSLI	GKGCMC	2 cut(s)	506, 599
BstUI	CGCG	1 cut(s)	579
BstV1I	GCAGC	5 cut(s)	44, 166, 226, 390, 667
BstX2I	RGATCY	2 cut(s)	428, 671
BstYI	RGATCY	2 cut(s)	428, 671
BsuRI	GGCC	5 cut(s)	154, 486, 504, 520, 526
BtrI	CACGTC	1 cut(s)	594
BtsCI	GGATG	2 cut(s)	76, 299
BveI	ACCTGC	2 cut(s)	89, 841
Cac8I	GCNNGC	3 cut(s)	42, 156, 405
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	5 cut(s)	78, 502, 503, 509, 518
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	1 cut(s)	643
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	5 cut(s)	6, 144, 183, 260, 675
DpnI	GATC	7 cut(s)	162, 298, 337, 430, 477, 673, 852
DpnII	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
Eam1104I	CTCTTC	3 cut(s)	217, 554, 832
EarI	CTCTTC	3 cut(s)	217, 554, 832
Eco130I	CCWWGG	2 cut(s)	487, 521
Eco24I	GRGCYC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	78, 509
EcoO109I	RGGNCCY	1 cut(s)	503
EcoRII	CCWGG	4 cut(s)	498, 505, 526, 667
EcoT14I	CCWWGG	2 cut(s)	487, 521
EcoT38I	GRGCYC	1 cut(s)	506
ErhI	CCWWGG	2 cut(s)	487, 521
FaeI	CATG	1 cut(s)	646
FatI	CATG	1 cut(s)	642
FauNDI	CATATG	1 cut(s)	274
FbaI	TGATCA	2 cut(s)	160, 850
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
FokI	GGATG	2 cut(s)	83, 286
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
FspBI	CTAG	2 cut(s)	45, 423
GluI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	5 cut(s)	154, 486, 504, 520, 526
HapII	CCGG	2 cut(s)	155, 716
Hin1II	CATG	1 cut(s)	646
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	531, 812
HpaII	CCGG	2 cut(s)	155, 716
HphI	GGTGA	1 cut(s)	822
Hpy166II	GTNNAC	2 cut(s)	13, 372
Hpy188I	TCNGA	1 cut(s)	767
Hpy188III	TCNNGA	2 cut(s)	539, 839
Hpy8I	GTNNAC	2 cut(s)	13, 372
Hpy99I	CGWCG	2 cut(s)	56, 545
HpyAV	CCTTC	2 cut(s)	57, 713
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	8 cut(s)	126, 242, 397, 407, 566, 654, 683, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 603, 712
HpyF3I	CTNAG	5 cut(s)	6, 144, 183, 260, 675
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	1 cut(s)	646
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Ksp22I	TGATCA	2 cut(s)	160, 850
Kzo9I	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
LmnI	GCTCC	2 cut(s)	223, 841
Lsp1109I	GCAGC	5 cut(s)	44, 166, 226, 390, 667
LweI	GCATC	2 cut(s)	559, 702
MaeI	CTAG	2 cut(s)	45, 423
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	2 cut(s)	638, 776
MalI	GATC	7 cut(s)	162, 298, 337, 430, 477, 673, 852
MboI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
MboII	GAAGA	4 cut(s)	204, 273, 571, 819
MflI	RGATCY	2 cut(s)	428, 671
MhlI	GDGCHC	2 cut(s)	506, 599
MluCI	AATT	4 cut(s)	22, 103, 136, 787
MlyI	GAGTC	1 cut(s)	821
MroNI	GCCGGC	1 cut(s)	154
MspI	CCGG	2 cut(s)	155, 716
MspR9I	CCNGG	4 cut(s)	500, 507, 528, 669
MvaI	CCWGG	4 cut(s)	500, 507, 528, 669
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	3 cut(s)	41, 603, 712
NaeI	GCCGGC	1 cut(s)	156
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	646
NlaIV	GGNNCC	3 cut(s)	430, 504, 519
NmeAIII	GCCGAG	1 cut(s)	174
PaqCI	CACCTGC	1 cut(s)	841
PasI	CCCWGGG	1 cut(s)	499
PdiI	GCCGGC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	531
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	5 cut(s)	34, 181, 241, 380, 682
PleI	GAGTC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	820
PsiI	TTATAA	1 cut(s)	351
Psp6I	CCWGG	4 cut(s)	498, 505, 526, 667
PspGI	CCWGG	4 cut(s)	498, 505, 526, 667
PspN4I	GGNNCC	3 cut(s)	430, 504, 519
PspOMI	GGGCCC	1 cut(s)	502
PspPI	GGNCC	5 cut(s)	78, 502, 503, 509, 518
PsuI	RGATCY	2 cut(s)	428, 671
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SatI	GCNGC	5 cut(s)	33, 180, 240, 379, 681
Sau3AI	GATC	7 cut(s)	160, 296, 335, 428, 475, 671, 850
Sau96I	GGNCC	5 cut(s)	78, 502, 503, 509, 518
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	4 cut(s)	500, 507, 528, 669
SduI	GDGCHC	2 cut(s)	506, 599
SfaNI	GCATC	2 cut(s)	559, 702
SfcI	CTRYAG	2 cut(s)	372, 385
SinI	GGWCC	2 cut(s)	78, 509
Sse9I	AATT	4 cut(s)	22, 103, 136, 787
SsiI	CCGC	1 cut(s)	606
SspMI	CTAG	2 cut(s)	45, 423
StyD4I	CCNGG	4 cut(s)	498, 505, 526, 667
StyI	CCWWGG	2 cut(s)	487, 521
TaaI	ACNGT	1 cut(s)	634
TaiI	ACGT	1 cut(s)	596
TasI	AATT	4 cut(s)	22, 103, 136, 787
TatI	WGTACW	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	531
TseI	GCWGC	5 cut(s)	32, 179, 239, 378, 680
TspDTI	ATGAA	3 cut(s)	15, 612, 858
TspGWI	ACGGA	2 cut(s)	312, 750
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	2 cut(s)	78, 509
XapI	RAATTY	2 cut(s)	22, 103
XmiI	GTMKAC	1 cut(s)	371
XspI	CTAG	2 cut(s)	45, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.