Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8521931.1

Orthogroup ID

OG0004516

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2286

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8521931.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 803 bp

ggagtagaagggaggatgattggacctgccctgcgtgtgggaatgtgaatttctcgtttagaacaacttgcaatatgcgtaattgcactcagccgaggccggctgatcataactctaaatcggctgcaaagcctttccaagccccacaaccttactcttctgctcctccgtatgtgggttctgctgcaccctcctcaatgtatcttagtgtgcctccatatggttcttctctgttcaatggatcatccattcctccctatgatgttccgttttctgggggatcagcatatcattacaactacggcaatcgcctgtctacaggcagcccctacagacccctgcatttgcctgcacctacgccttattctagtggatccctgataggaaatggtggattatacggtattcctcctatgatggatcggtatggccttggacttcccctgggccctggtcctatggggccaaggccaggattctatcccgacgataaatctcaaaagaagagtgcagatgccacacgcgataatgactggacgtgcccaaaatgtggaaatatcaacttttcatttagaaccgtttgtaacatgaggaagtgcaatacgccaaaacctggatctcaggctgcaaagaatgacaaaagtgcaaagcaaaagatgccggaaggtagctggaagtgtgagaaatgtaataacataaactatccgttccgaaccaagtgtaacagacagaattgtggagaggacaaaccaaccgagtcaaagaagtcctcttcacctgctccagatgaaaatgatcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

266

Amino Acids

29.01

Weight (kDa)

9.15

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67325 AT1G67325
fragaria_vesca	FvH4_4g23660 FvH4_4g23660 FvH4_4g23660
malus_domestica	MD16G1120200.v1.1
prunus_persica	Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1
pyrus_communis	pycom13g10460 pycom16g10270
rosa_chinensis	RchiOBHm_Chr4g0430131
rosa_laevigata	RLG00000007001
rosa_multiflora	Rmu_co8521931.1_g000001 Rmu_ssc0000150.1_g000022
rosa_roxburghii	Rroxscaffold_5G00371940
rosa_rugosa	Rorug04G0240600 Rorug04G0240600 Rorug04G0240700 Rorug04G0240800
rosa_samantha	Rh4AG297600 Rh4BG304000 Rh4CG319500 Rh4DG301400
rosa_wichuraiana	Rw4G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	786
Acc36I	ACCTGC	2 cut(s)	34, 786
AccB7I	CCANNNNNTGG	2 cut(s)	550, 613
AccI	GTMKAC	1 cut(s)	316
AccII	CGCG	1 cut(s)	524
AclWI	GGATC	6 cut(s)	249, 288, 368, 381, 428, 624
AcsI	RAATTY	1 cut(s)	48
AfiI	CCNNNNNNNGG	7 cut(s)	37, 175, 220, 274, 472, 550, 613
AgsI	TTSAA	1 cut(s)	237
AjiI	CACGTC	1 cut(s)	539
AjnI	CCWGG	4 cut(s)	443, 450, 471, 612
AluBI	AGCT	1 cut(s)	671
AluI	AGCT	1 cut(s)	671
AlwI	GGATC	6 cut(s)	249, 288, 368, 381, 428, 624
AoxI	GGCC	5 cut(s)	97, 429, 447, 463, 469
ApaI	GGGCCC	1 cut(s)	451
ApeKI	GCWGC	4 cut(s)	124, 184, 323, 625
ApoI	RAATTY	1 cut(s)	48
AspS9I	GGNCC	5 cut(s)	23, 447, 448, 454, 463
AsuHPI	GGTGA	1 cut(s)	767
AvaII	GGWCC	2 cut(s)	23, 454
BaeGI	GKGCMC	2 cut(s)	451, 544
BamHI	GGATCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	451
BbvI	GCAGC	4 cut(s)	111, 171, 335, 612
BccI	CCATC	1 cut(s)	411
BceAI	ACGGC	1 cut(s)	318
BciT130I	CCWGG	4 cut(s)	445, 452, 473, 614
BclI	TGATCA	2 cut(s)	105, 795
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	2 cut(s)	317, 330
BfuAI	ACCTGC	2 cut(s)	34, 786
BisI	GCNGC	4 cut(s)	125, 185, 324, 626
BlsI	GCNGC	4 cut(s)	126, 186, 325, 627
Bme1390I	CCNGG	4 cut(s)	445, 452, 473, 614
Bme18I	GGWCC	2 cut(s)	23, 454
BmgBI	CACGTC	1 cut(s)	539
BmgT120I	GGNCC	5 cut(s)	23, 447, 448, 454, 463
BmiI	GGNNCC	3 cut(s)	375, 449, 464
BmrFI	CCNGG	4 cut(s)	445, 452, 473, 614
BmsI	GCATC	2 cut(s)	504, 647
BpmI	CTGGAG	1 cut(s)	767
BsaJI	CCNNGG	6 cut(s)	94, 432, 443, 444, 450, 466
Bsc4I	CCNNNNNNNGG	7 cut(s)	37, 175, 220, 274, 472, 550, 613
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	538
BseBI	CCWGG	4 cut(s)	445, 452, 473, 614
BseDI	CCNNGG	6 cut(s)	94, 432, 443, 444, 450, 466
BseGI	GGATG	2 cut(s)	21, 244
BseLI	CCNNNNNNNGG	7 cut(s)	37, 175, 220, 274, 472, 550, 613
BseMII	CTCAG	2 cut(s)	103, 634
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	2 cut(s)	155, 183
BseSI	GKGCMC	2 cut(s)	451, 544
BseXI	GCAGC	4 cut(s)	111, 171, 335, 612
BsgI	GTGCAG	3 cut(s)	170, 335, 530
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	5 cut(s)	99, 431, 449, 465, 471
BsiSI	CCGG	2 cut(s)	100, 661
BslI	CCNNNNNNNGG	7 cut(s)	37, 175, 220, 274, 472, 550, 613
BsnI	GGCC	5 cut(s)	99, 431, 449, 465, 471
Bsp120I	GGGCCC	1 cut(s)	447
Bsp1286I	GDGCHC	2 cut(s)	451, 544
Bsp143I	GATC	7 cut(s)	105, 241, 280, 373, 420, 616, 795
BspANI	GGCC	5 cut(s)	99, 431, 449, 465, 471
BspCNI	CTCAG	2 cut(s)	102, 633
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	3 cut(s)	375, 449, 464
BspMI	ACCTGC	2 cut(s)	34, 786
BspPI	GGATC	6 cut(s)	249, 288, 368, 381, 428, 624
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	538
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	6 cut(s)	94, 432, 443, 444, 450, 466
BssMI	GATC	7 cut(s)	105, 241, 280, 373, 420, 616, 795
BssT1I	CCWWGG	2 cut(s)	432, 466
Bst2UI	CCWGG	4 cut(s)	445, 452, 473, 614
Bst4CI	ACNGT	2 cut(s)	403, 579
Bst6I	CTCTTC	3 cut(s)	162, 499, 777
BstAPI	GCANNNNNTGC	1 cut(s)	657
BstC8I	GCNNGC	2 cut(s)	101, 350
BstDEI	CTNAG	3 cut(s)	89, 205, 620
BstF5I	GGATG	2 cut(s)	21, 244
BstFNI	CGCG	1 cut(s)	524
BstKTI	GATC	7 cut(s)	108, 244, 283, 376, 423, 619, 798
BstMBI	GATC	7 cut(s)	105, 241, 280, 373, 420, 616, 795
BstMWI	GCNNNNNNNGC	1 cut(s)	657
BstNI	CCWGG	4 cut(s)	445, 452, 473, 614
BstSCI	CCNGG	4 cut(s)	443, 450, 471, 612
BstSFI	CTRYAG	2 cut(s)	317, 330
BstSLI	GKGCMC	2 cut(s)	451, 544
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	4 cut(s)	111, 171, 335, 612
BstX2I	RGATCY	2 cut(s)	373, 616
BstYI	RGATCY	2 cut(s)	373, 616
BsuRI	GGCC	5 cut(s)	99, 431, 449, 465, 471
BtrI	CACGTC	1 cut(s)	539
BtsCI	GGATG	2 cut(s)	21, 244
BveI	ACCTGC	2 cut(s)	34, 786
Cac8I	GCNNGC	2 cut(s)	101, 350
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	5 cut(s)	23, 447, 448, 454, 463
CviAII	CATG	1 cut(s)	588
DdeI	CTNAG	3 cut(s)	89, 205, 620
DpnI	GATC	7 cut(s)	107, 243, 282, 375, 422, 618, 797
DpnII	GATC	7 cut(s)	105, 241, 280, 373, 420, 616, 795
Eam1104I	CTCTTC	3 cut(s)	162, 499, 777
EarI	CTCTTC	3 cut(s)	162, 499, 777
Eco130I	CCWWGG	2 cut(s)	432, 466
Eco24I	GRGCYC	1 cut(s)	451
Eco47I	GGWCC	2 cut(s)	23, 454
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	4 cut(s)	443, 450, 471, 612
EcoT14I	CCWWGG	2 cut(s)	432, 466
EcoT38I	GRGCYC	1 cut(s)	451
ErhI	CCWWGG	2 cut(s)	432, 466
FaeI	CATG	1 cut(s)	591
FatI	CATG	1 cut(s)	587
FauNDI	CATATG	1 cut(s)	219
FbaI	TGATCA	2 cut(s)	105, 795
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	125, 185, 324, 626
FokI	GGATG	2 cut(s)	28, 231
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	4 cut(s)	125, 185, 324, 626
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	4 cut(s)	125, 185, 324, 626
GsuI	CTGGAG	1 cut(s)	767
HaeIII	GGCC	5 cut(s)	99, 431, 449, 465, 471
HapII	CCGG	2 cut(s)	100, 661
Hin1II	CATG	1 cut(s)	591
HinfI	GANTC	2 cut(s)	476, 757
HpaII	CCGG	2 cut(s)	100, 661
HphI	GGTGA	1 cut(s)	767
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	712
Hpy188III	TCNNGA	2 cut(s)	484, 784
Hpy8I	GTNNAC	1 cut(s)	317
Hpy99I	CGWCG	1 cut(s)	490
HpyAV	CCTTC	1 cut(s)	658
HpyCH4III	ACNGT	2 cut(s)	403, 579
HpyCH4IV	ACGT	1 cut(s)	538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	657
HpyF3I	CTNAG	3 cut(s)	89, 205, 620
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	1 cut(s)	591
KroI	GCCGGC	1 cut(s)	99
KroNI	GCCGGC	1 cut(s)	101
Ksp22I	TGATCA	2 cut(s)	105, 795
Kzo9I	GATC	7 cut(s)	105, 241, 280, 373, 420, 616, 795
LmnI	GCTCC	2 cut(s)	168, 786
Lsp1109I	GCAGC	4 cut(s)	111, 171, 335, 612
LweI	GCATC	2 cut(s)	504, 647
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	2 cut(s)	583, 721
MalI	GATC	7 cut(s)	107, 243, 282, 375, 422, 618, 797
MboI	GATC	7 cut(s)	105, 241, 280, 373, 420, 616, 795
MboII	GAAGA	4 cut(s)	149, 218, 516, 764
MflI	RGATCY	2 cut(s)	373, 616
MhlI	GDGCHC	2 cut(s)	451, 544
MluCI	AATT	3 cut(s)	48, 81, 732
MlyI	GAGTC	1 cut(s)	766
MroNI	GCCGGC	1 cut(s)	99
MspI	CCGG	2 cut(s)	100, 661
MspR9I	CCNGG	4 cut(s)	445, 452, 473, 614
MvaI	CCWGG	4 cut(s)	445, 452, 473, 614
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	657
NaeI	GCCGGC	1 cut(s)	101
NdeI	CATATG	1 cut(s)	219
NdeII	GATC	7 cut(s)	105, 241, 280, 373, 420, 616, 795
NgoMIV	GCCGGC	1 cut(s)	99
NlaIII	CATG	1 cut(s)	591
NlaIV	GGNNCC	3 cut(s)	375, 449, 464
NmeAIII	GCCGAG	1 cut(s)	119
PaqCI	CACCTGC	1 cut(s)	786
PasI	CCCWGGG	1 cut(s)	444
PdiI	GCCGGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	476
PflMI	CCANNNNNTGG	2 cut(s)	550, 613
PkrI	GCNGC	4 cut(s)	126, 186, 325, 627
PleI	GAGTC	1 cut(s)	765
PpsI	GAGTC	1 cut(s)	765
Psp6I	CCWGG	4 cut(s)	443, 450, 471, 612
PspGI	CCWGG	4 cut(s)	443, 450, 471, 612
PspN4I	GGNNCC	3 cut(s)	375, 449, 464
PspOMI	GGGCCC	1 cut(s)	447
PspPI	GGNCC	5 cut(s)	23, 447, 448, 454, 463
PsuI	RGATCY	2 cut(s)	373, 616
SatI	GCNGC	4 cut(s)	125, 185, 324, 626
Sau3AI	GATC	7 cut(s)	105, 241, 280, 373, 420, 616, 795
Sau96I	GGNCC	5 cut(s)	23, 447, 448, 454, 463
SchI	GAGTC	1 cut(s)	766
ScrFI	CCNGG	4 cut(s)	445, 452, 473, 614
SduI	GDGCHC	2 cut(s)	451, 544
SetI	ASST	8 cut(s)	28, 153, 357, 541, 615, 669, 673, 780
SfaNI	GCATC	2 cut(s)	504, 647
SfcI	CTRYAG	2 cut(s)	317, 330
SinI	GGWCC	2 cut(s)	23, 454
Sse9I	AATT	3 cut(s)	48, 81, 732
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	4 cut(s)	443, 450, 471, 612
StyI	CCWWGG	2 cut(s)	432, 466
TaaI	ACNGT	2 cut(s)	403, 579
TaiI	ACGT	1 cut(s)	541
TasI	AATT	3 cut(s)	48, 81, 732
TfiI	GAWTC	1 cut(s)	476
TseI	GCWGC	4 cut(s)	124, 184, 323, 625
TspDTI	ATGAA	2 cut(s)	557, 803
TspGWI	ACGGA	3 cut(s)	158, 257, 695
Van91I	CCANNNNNTGG	2 cut(s)	550, 613
VpaK11BI	GGWCC	2 cut(s)	23, 454
XapI	RAATTY	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	316
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.