Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000150.1

Orthogroup ID

OG0004516

Physical Location & Seq

Genomic Coordinates Forward (+)

112278 .. 115941

Gene Structure 3664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000150.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atgtcctctgacttattccggactcatgtaaatgcaagacggatcacaagtttccaacagcttattgatgctatggccactgctgaaagacatggcaatgaacttgtgcaaagaagatttgataggcttcaagatagctatcaagaacatcatcctatggctagagaaagtcgccatagaagtcatgatccatacgatcgaaatgctcaagaagcacccagctcgaacaaacttaaccgtctctacataaaccctcgcaatctgtcgtcgtcgccccaaccctgctgtttctccgatttggaccaatcccaatcaaatttctccgccgcattatcttacctcgccgccgccgccgtcgatatgtctcaggttgacaacagaaattcatcagcagccaagcgtgctagaaccgacgggagtagaagggaggatgattggacctgccctgcgtgtgggaatgtgaatttctcgtttagaacaacttgcaatatgcgtaattgcactcagccgaggccggctgatcataactctaaatcggctgcaaagcctttccaagccccacaaccttactcttctgctcctccgtatgtgggttctgctgcaccctcctcaatgtatcttagtgtgcctccatatggttcttctctgttcaatggatcatccattcctccctatgatgttccgttttctgggggatcagcatatcattacaactacggcaatcgcctgtctacaggcagcccctacagacccctgcatttgcctgcacctacgccttattctagtggatccctgataggaaatggtggattatacggtattcctcctatgatggatcggtatggccttggacttcccctgggcccaggtcctatggggccaaggccaggattctatcccgacgataaatctcaaaagaagagtgcagatgccacacgcgataatgactggacgtgcccaaaatgtggaaatatcaacttttcatttagaaccgtttgtaacatgaggaagtgcaatacgccaaaacctggatctcaggctgcaaagaatgacaaaagtgcaaagcaaaagatgccggaaggtagctggaagtgtgagaaatgtaataacataaactatccgttccgaaccaagtgtaacagacagaattgtggagaggacaaaccaaccgagtcaaagaagtcctcttcacctgctccagatgaaaatgatcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

405

Amino Acids

44.8

Weight (kDa)

9.15

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67325 AT1G67325
fragaria_vesca	FvH4_4g23660 FvH4_4g23660 FvH4_4g23660
malus_domestica	MD16G1120200.v1.1
prunus_persica	Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1 Prupe.1G225000_v2.0.a1
pyrus_communis	pycom13g10460 pycom16g10270
rosa_chinensis	RchiOBHm_Chr4g0430131
rosa_laevigata	RLG00000007001
rosa_multiflora	Rmu_co8521931.1_g000001 Rmu_ssc0000150.1_g000022
rosa_roxburghii	Rroxscaffold_5G00371940
rosa_rugosa	Rorug04G0240600 Rorug04G0240600 Rorug04G0240700 Rorug04G0240800
rosa_samantha	Rh4AG297600 Rh4BG304000 Rh4CG319500 Rh4DG301400
rosa_wichuraiana	Rw4G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1201
Acc36I	ACCTGC	2 cut(s)	449, 1201
AccB7I	CCANNNNNTGG	2 cut(s)	965, 1028
AccI	GTMKAC	1 cut(s)	731
AccII	CGCG	1 cut(s)	939
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	5 cut(s)	324, 327, 345, 348, 351
AclWI	GGATC	8 cut(s)	50, 182, 664, 703, 783, 796, 843, 1039
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	3 cut(s)	316, 382, 463
AfiI	CCNNNNNNNGG	7 cut(s)	452, 590, 635, 689, 887, 965, 1028
AgsI	TTSAA	2 cut(s)	131, 652
AjiI	CACGTC	1 cut(s)	954
AjnI	CCWGG	4 cut(s)	858, 865, 886, 1027
AluBI	AGCT	4 cut(s)	61, 138, 222, 1086
AluI	AGCT	4 cut(s)	61, 138, 222, 1086
Alw26I	GTCTC	2 cut(s)	245, 369
AlwI	GGATC	8 cut(s)	50, 182, 664, 703, 783, 796, 843, 1039
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	6 cut(s)	75, 512, 844, 862, 878, 884
ApaI	GGGCCC	1 cut(s)	866
ApeKI	GCWGC	5 cut(s)	392, 539, 599, 738, 1040
ApoI	RAATTY	3 cut(s)	316, 382, 463
AspS9I	GGNCC	6 cut(s)	301, 438, 862, 863, 869, 878
AsuHPI	GGTGA	1 cut(s)	1182
AvaII	GGWCC	3 cut(s)	301, 438, 869
BaeGI	GKGCMC	2 cut(s)	866, 959
BalI	TGGCCA	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	788
BanII	GRGCYC	1 cut(s)	866
BbvI	GCAGC	5 cut(s)	404, 526, 586, 750, 1027
BccI	CCATC	1 cut(s)	826
BceAI	ACGGC	2 cut(s)	338, 733
BcgI	CGANNNNNNTGC	4 cut(s)	185, 204, 219, 238
BciT130I	CCWGG	4 cut(s)	860, 867, 888, 1029
BclI	TGATCA	2 cut(s)	520, 1210
BcoDI	GTCTC	2 cut(s)	245, 369
BfaI	CTAG	3 cut(s)	162, 405, 783
BfmI	CTRYAG	2 cut(s)	732, 745
BfuAI	ACCTGC	2 cut(s)	449, 1201
BisI	GCNGC	9 cut(s)	327, 345, 348, 351, 393, 540, 600, 739, 1041
BlsI	GCNGC	9 cut(s)	328, 346, 349, 352, 394, 541, 601, 740, 1042
Bme1390I	CCNGG	4 cut(s)	860, 867, 888, 1029
Bme18I	GGWCC	3 cut(s)	301, 438, 869
BmgBI	CACGTC	1 cut(s)	954
BmgT120I	GGNCC	6 cut(s)	301, 438, 862, 863, 869, 878
BmiI	GGNNCC	3 cut(s)	790, 864, 879
BmrFI	CCNGG	4 cut(s)	860, 867, 888, 1029
BmsI	GCATC	3 cut(s)	58, 919, 1062
BpmI	CTGGAG	1 cut(s)	1182
BpuEI	CTTGAG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	138
BsaJI	CCNNGG	6 cut(s)	509, 847, 858, 859, 865, 881
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	7 cut(s)	452, 590, 635, 689, 887, 965, 1028
Bse118I	RCCGGY	1 cut(s)	514
Bse1I	ACTGG	1 cut(s)	953
Bse3DI	GCAATG	1 cut(s)	103
Bse8I	GATNNNNATC	1 cut(s)	138
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	4 cut(s)	860, 867, 888, 1029
BseDI	CCNNGG	6 cut(s)	509, 847, 858, 859, 865, 881
BseGI	GGATG	3 cut(s)	151, 436, 659
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	7 cut(s)	452, 590, 635, 689, 887, 965, 1028
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	3 cut(s)	380, 518, 1049
BseNI	ACTGG	1 cut(s)	953
BseRI	GAGGAG	2 cut(s)	570, 598
BseSI	GKGCMC	2 cut(s)	866, 959
BseXI	GCAGC	5 cut(s)	404, 526, 586, 750, 1027
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	3 cut(s)	585, 750, 945
Bsh1236I	CGCG	1 cut(s)	939
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	6 cut(s)	77, 514, 846, 864, 880, 886
BsiEI	CGRYCG	1 cut(s)	199
BsiSI	CCGG	3 cut(s)	19, 515, 1076
BslI	CCNNNNNNNGG	7 cut(s)	452, 590, 635, 689, 887, 965, 1028
BsmAI	GTCTC	2 cut(s)	245, 369
BsmBI	CGTCTC	1 cut(s)	245
BsnI	GGCC	6 cut(s)	77, 514, 846, 864, 880, 886
Bsp120I	GGGCCC	1 cut(s)	862
Bsp1286I	GDGCHC	2 cut(s)	866, 959
Bsp13I	TCCGGA	1 cut(s)	18
BspACI	CCGC	5 cut(s)	324, 327, 345, 348, 351
BspANI	GGCC	6 cut(s)	77, 514, 846, 864, 880, 886
BspCNI	CTCAG	3 cut(s)	379, 517, 1048
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	939
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	790, 864, 879
BspMI	ACCTGC	2 cut(s)	449, 1201
BspPI	GGATC	8 cut(s)	50, 182, 664, 703, 783, 796, 843, 1039
BsrDI	GCAATG	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	953
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	6 cut(s)	509, 847, 858, 859, 865, 881
BssT1I	CCWWGG	2 cut(s)	847, 881
Bst2UI	CCWGG	4 cut(s)	860, 867, 888, 1029
Bst4CI	ACNGT	3 cut(s)	239, 818, 994
Bst6I	CTCTTC	3 cut(s)	577, 914, 1192
BstAPI	GCANNNNNTGC	1 cut(s)	1072
BstC8I	GCNNGC	3 cut(s)	402, 516, 765
BstDEI	CTNAG	4 cut(s)	366, 504, 620, 1035
BstF5I	GGATG	3 cut(s)	151, 436, 659
BstFNI	CGCG	1 cut(s)	939
BstMAI	GTCTC	2 cut(s)	245, 369
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 350, 401, 1072
BstNI	CCWGG	4 cut(s)	860, 867, 888, 1029
BstSCI	CCNGG	4 cut(s)	858, 865, 886, 1027
BstSFI	CTRYAG	2 cut(s)	732, 745
BstSLI	GKGCMC	2 cut(s)	866, 959
BstUI	CGCG	1 cut(s)	939
BstV1I	GCAGC	5 cut(s)	404, 526, 586, 750, 1027
BstX2I	RGATCY	2 cut(s)	788, 1031
BstYI	RGATCY	2 cut(s)	788, 1031
BsuRI	GGCC	6 cut(s)	77, 514, 846, 864, 880, 886
BtrI	CACGTC	1 cut(s)	954
BtsCI	GGATG	3 cut(s)	151, 436, 659
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	2 cut(s)	449, 1201
Cac8I	GCNNGC	3 cut(s)	402, 516, 765
CciI	TCATGA	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	6 cut(s)	301, 438, 862, 863, 869, 878
CviAII	CATG	4 cut(s)	26, 92, 185, 1003
DdeI	CTNAG	4 cut(s)	366, 504, 620, 1035
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	3 cut(s)	577, 914, 1192
EarI	CTCTTC	3 cut(s)	577, 914, 1192
EciI	GGCGGA	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	847, 881
Eco24I	GRGCYC	1 cut(s)	866
Eco47I	GGWCC	3 cut(s)	301, 438, 869
EcoO109I	RGGNCCY	1 cut(s)	869
EcoRII	CCWGG	4 cut(s)	858, 865, 886, 1027
EcoT14I	CCWWGG	2 cut(s)	847, 881
EcoT38I	GRGCYC	1 cut(s)	866
ErhI	CCWWGG	2 cut(s)	847, 881
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	4 cut(s)	29, 95, 188, 1006
FatI	CATG	4 cut(s)	25, 91, 184, 1002
FauNDI	CATATG	1 cut(s)	634
FbaI	TGATCA	2 cut(s)	520, 1210
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	9 cut(s)	327, 345, 348, 351, 393, 540, 600, 739, 1041
FokI	GGATG	3 cut(s)	138, 443, 646
FriOI	GRGCYC	1 cut(s)	866
Fsp4HI	GCNGC	9 cut(s)	327, 345, 348, 351, 393, 540, 600, 739, 1041
FspBI	CTAG	3 cut(s)	162, 405, 783
GluI	GCNGC	9 cut(s)	327, 345, 348, 351, 393, 540, 600, 739, 1041
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	1182
HaeIII	GGCC	6 cut(s)	77, 514, 846, 864, 880, 886
HapII	CCGG	3 cut(s)	19, 515, 1076
Hin1II	CATG	4 cut(s)	29, 95, 188, 1006
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	3 cut(s)	22, 891, 1172
HpaII	CCGG	3 cut(s)	19, 515, 1076
HphI	GGTGA	1 cut(s)	1182
Hpy166II	GTNNAC	2 cut(s)	373, 732
Hpy188I	TCNGA	3 cut(s)	10, 295, 1127
Hpy188III	TCNNGA	7 cut(s)	19, 131, 143, 185, 209, 899, 1199
Hpy8I	GTNNAC	2 cut(s)	373, 732
Hpy99I	CGWCG	5 cut(s)	271, 274, 359, 416, 905
HpyAV	CCTTC	2 cut(s)	417, 1073
HpyCH4III	ACNGT	3 cut(s)	239, 818, 994
HpyCH4IV	ACGT	1 cut(s)	953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 350, 401, 1072
HpyF3I	CTNAG	4 cut(s)	366, 504, 620, 1035
HpySE526I	ACGT	1 cut(s)	953
Hsp92II	CATG	4 cut(s)	29, 95, 188, 1006
Kpn2I	TCCGGA	1 cut(s)	18
KroI	GCCGGC	1 cut(s)	514
KroNI	GCCGGC	1 cut(s)	516
Ksp22I	TGATCA	2 cut(s)	520, 1210
LmnI	GCTCC	2 cut(s)	583, 1201
Lsp1109I	GCAGC	5 cut(s)	404, 526, 586, 750, 1027
LweI	GCATC	3 cut(s)	58, 919, 1062
MaeI	CTAG	3 cut(s)	162, 405, 783
MaeII	ACGT	1 cut(s)	953
MaeIII	GTNAC	2 cut(s)	998, 1136
MboII	GAAGA	5 cut(s)	126, 564, 633, 931, 1179
MflI	RGATCY	2 cut(s)	788, 1031
MhlI	GDGCHC	2 cut(s)	866, 959
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	5 cut(s)	316, 382, 463, 496, 1147
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	2 cut(s)	16, 1181
MmeI	TCCRAC	1 cut(s)	79
Mox20I	TGGCCA	1 cut(s)	77
MroI	TCCGGA	1 cut(s)	18
MroNI	GCCGGC	1 cut(s)	514
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	2 cut(s)	30, 96
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	3 cut(s)	19, 515, 1076
MspR9I	CCNGG	4 cut(s)	860, 867, 888, 1029
MvaI	CCWGG	4 cut(s)	860, 867, 888, 1029
MvnI	CGCG	1 cut(s)	939
MwoI	GCNNNNNNNGC	4 cut(s)	212, 350, 401, 1072
NaeI	GCCGGC	1 cut(s)	516
NdeI	CATATG	1 cut(s)	634
NgoMIV	GCCGGC	1 cut(s)	514
NlaIII	CATG	4 cut(s)	29, 95, 188, 1006
NlaIV	GGNNCC	3 cut(s)	790, 864, 879
NmeAIII	GCCGAG	1 cut(s)	534
PagI	TCATGA	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	1201
PasI	CCCWGGG	1 cut(s)	859
PdiI	GCCGGC	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	891
PflMI	CCANNNNNTGG	2 cut(s)	965, 1028
PkrI	GCNGC	9 cut(s)	328, 346, 349, 352, 394, 541, 601, 740, 1042
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	2 cut(s)	16, 1180
PpsI	GAGTC	2 cut(s)	16, 1180
PpuMI	RGGWCCY	1 cut(s)	869
Psp5II	RGGWCCY	1 cut(s)	869
Psp6I	CCWGG	4 cut(s)	858, 865, 886, 1027
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	4 cut(s)	858, 865, 886, 1027
PspN4I	GGNNCC	3 cut(s)	790, 864, 879
PspOMI	GGGCCC	1 cut(s)	862
PspPI	GGNCC	6 cut(s)	301, 438, 862, 863, 869, 878
PspPPI	RGGWCCY	1 cut(s)	869
PsuI	RGATCY	2 cut(s)	788, 1031
PvuI	CGATCG	1 cut(s)	199
RseI	CAYNNNNRTG	2 cut(s)	30, 96
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	9 cut(s)	327, 345, 348, 351, 393, 540, 600, 739, 1041
Sau96I	GGNCC	6 cut(s)	301, 438, 862, 863, 869, 878
SchI	GAGTC	2 cut(s)	16, 1181
ScrFI	CCNGG	4 cut(s)	860, 867, 888, 1029
SduI	GDGCHC	2 cut(s)	866, 959
SfaNI	GCATC	3 cut(s)	58, 919, 1062
SfcI	CTRYAG	2 cut(s)	732, 745
SinI	GGWCC	3 cut(s)	301, 438, 869
SmiMI	CAYNNNNRTG	2 cut(s)	30, 96
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	5 cut(s)	316, 382, 463, 496, 1147
SsiI	CCGC	5 cut(s)	324, 327, 345, 348, 351
SspMI	CTAG	3 cut(s)	162, 405, 783
StyD4I	CCNGG	4 cut(s)	858, 865, 886, 1027
StyI	CCWWGG	2 cut(s)	847, 881
TaaI	ACNGT	3 cut(s)	239, 818, 994
TaiI	ACGT	1 cut(s)	956
TaqI	TCGA	3 cut(s)	199, 224, 357
TasI	AATT	5 cut(s)	316, 382, 463, 496, 1147
TauI	GCSGC	4 cut(s)	329, 347, 350, 353
TfiI	GAWTC	1 cut(s)	891
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	5 cut(s)	392, 539, 599, 738, 1040
TspDTI	ATGAA	4 cut(s)	114, 375, 972, 1218
TspGWI	ACGGA	4 cut(s)	55, 573, 672, 1110
TspRI	CASTG	1 cut(s)	85
Van91I	CCANNNNNTGG	2 cut(s)	965, 1028
VpaK11BI	GGWCC	3 cut(s)	301, 438, 869
XapI	RAATTY	3 cut(s)	316, 382, 463
XmiI	GTMKAC	1 cut(s)	731
XspI	CTAG	3 cut(s)	162, 405, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.